Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Forward (+)

4069769 .. 4070928

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGCAGCGTCTCACGTATCGCGCCCGGCACAGCTACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACCCCTGGAGGGAAGCTAGTGTACCAGACCACTAAGAAGAGGGCCAGTGGGCCCAAGTGCCCTGTTACCGGCAAGAGAATTCAAGGGATCCCTCACTTGAGGCCTACTGAGTATAAGAGGTCCAGATTATCTAGGAATCGCAGGACTGTTAACCGTGCTTATGGAGGTGTGTTGTCTGGAGGTGCCGTCAAGGAAAGGATCATCAGGGCCTTTCTGGTGGAGGAACAAAAGATCGTGAAAAAGGTGTTGAAGATTCAAAAGACGAAGGAAAAGCAAGCTGCAAAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

11.51

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	1 cut(s)	24
AclWI	GGATC	4 cut(s)	71, 154, 167, 278
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	81, 140
AgsI	TTSAA	3 cut(s)	155, 322, 329
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	36, 88, 350
AluI	AGCT	3 cut(s)	36, 88, 350
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	4 cut(s)	71, 154, 167, 278
AoxI	GGCC	4 cut(s)	114, 122, 173, 279
ApaI	GGGCCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	7, 350
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	5 cut(s)	114, 122, 123, 192, 279
AsuC2I	CCSGG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	2 cut(s)	126, 134
BamHI	GGATCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbvI	GCAGC	2 cut(s)	19, 337
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	89, 204
BisI	GCNGC	2 cut(s)	8, 351
BlsI	GCNGC	2 cut(s)	9, 352
Bme1390I	CCNGG	2 cut(s)	28, 78
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	5 cut(s)	114, 122, 123, 192, 279
BmiI	GGNNCC	3 cut(s)	124, 161, 256
BmrFI	CCNGG	2 cut(s)	28, 78
BpmI	CTGGAG	2 cut(s)	99, 270
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 140
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	81, 140
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	117
BseSI	GKGCMC	2 cut(s)	126, 134
BseXI	GCAGC	2 cut(s)	19, 337
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	116, 124, 175, 281
BshNI	GGYRCC	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	28, 141
BslI	CCNNNNNNNGG	2 cut(s)	81, 140
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsnI	GGCC	4 cut(s)	116, 124, 175, 281
Bsp120I	GGGCCC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	126, 134
Bsp143I	GATC	4 cut(s)	63, 159, 270, 303
BspANI	GGCC	4 cut(s)	116, 124, 175, 281
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	124, 161, 256
BspPI	GGATC	4 cut(s)	71, 154, 167, 278
BspT107I	GGYRCC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	4 cut(s)	63, 159, 270, 303
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	220, 227
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	4 cut(s)	66, 162, 273, 306
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	63, 159, 270, 303
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	26, 76
BstSLI	GKGCMC	2 cut(s)	126, 134
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	19, 337
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	116, 124, 175, 281
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	5 cut(s)	114, 122, 123, 192, 279
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	7 cut(s)	36, 88, 116, 124, 175, 281, 350
CviKI_1	RGCY	7 cut(s)	36, 88, 116, 124, 175, 281, 350
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	105, 180
DpnI	GATC	4 cut(s)	65, 161, 272, 305
DpnII	GATC	4 cut(s)	63, 159, 270, 303
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco147I	AGGCCT	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	2 cut(s)	186, 234
Fnu4HI	GCNGC	2 cut(s)	8, 351
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	8, 351
FspBI	CTAG	2 cut(s)	89, 204
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	8, 351
GsuI	CTGGAG	2 cut(s)	99, 270
HaeIII	GGCC	4 cut(s)	116, 124, 175, 281
HapII	CCGG	2 cut(s)	28, 141
HhaI	GCGC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	208, 325
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	28, 141
Hpy166II	GTNNAC	2 cut(s)	94, 223
Hpy188III	TCNNGA	3 cut(s)	195, 249, 307
Hpy8I	GTNNAC	2 cut(s)	94, 223
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	220, 227
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	7, 353
HpyF3I	CTNAG	2 cut(s)	105, 180
HpySE526I	ACGT	1 cut(s)	17
HspAI	GCGC	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	63, 159, 270, 303
Lsp1109I	GCAGC	2 cut(s)	19, 337
MaeI	CTAG	2 cut(s)	89, 204
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	65, 161, 272, 305
MboI	GATC	4 cut(s)	63, 159, 270, 303
MboII	GAAGA	2 cut(s)	121, 334
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	126, 134
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	74, 105, 165, 174, 183, 230, 245, 286
MseI	TTAA	1 cut(s)	222
MspI	CCGG	2 cut(s)	28, 141
MspR9I	CCNGG	2 cut(s)	28, 78
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	24
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	63, 159, 270, 303
NlaIV	GGNNCC	3 cut(s)	124, 161, 256
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	208, 325
PkrI	GCNGC	2 cut(s)	9, 352
Ppu21I	YACGTR	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	124, 161, 256
PspOMI	GGGCCC	1 cut(s)	122
PspPI	GGNCC	5 cut(s)	114, 122, 123, 192, 279
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	8, 351
Sau3AI	GATC	4 cut(s)	63, 159, 270, 303
Sau96I	GGNCC	5 cut(s)	114, 122, 123, 192, 279
ScrFI	CCNGG	2 cut(s)	28, 78
SduI	GDGCHC	2 cut(s)	126, 134
SetI	ASST	8 cut(s)	20, 38, 90, 194, 241, 256, 318, 352
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	150
SseBI	AGGCCT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	89, 204
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	26, 76
TaaI	ACNGT	2 cut(s)	220, 227
TaiI	ACGT	1 cut(s)	20
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	208, 325
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	7, 350
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	150
XspI	CTAG	2 cut(s)	89, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.