Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

18771625 .. 18773357

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTCAGAGGCTCACATACCGTACGCGCCACAGCTACGCAACCAAGTCGAACCAGCATCGGATCGTCAAAGCCCCTGGTGGAAAGCTCGTGTATCAGACCAGTAAGAAGAGAGCTAGTGGACCAAAATGTCCTGTCACCGGAAAGAGAATCCAGGGGATTCCTCACTTGAGACCCGCTGAATATAAGAGGTCTAGACTATCAAGGAACAGGAGGACCGTGAATCGTGCCTATGGGGGTGTGCTGTCCGGTGGAGCTGTTAGAGAGAGGATCATCCGAGCCTTTTTGGTGGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATTCAGAAGCCAAAAGAAAAGCAGGCGTCCCAAAGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

11.6

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	71, 278
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	76, 153
AluBI	AGCT	4 cut(s)	36, 88, 116, 257
AluI	AGCT	4 cut(s)	36, 88, 116, 257
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	71, 278
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	122, 216
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	122, 216
BauI	CACGAG	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	2 cut(s)	78, 155
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	117, 195
Bme1390I	CCNGG	2 cut(s)	78, 155
Bme18I	GGWCC	2 cut(s)	122, 216
BmgT120I	GGNCC	2 cut(s)	122, 216
BmrFI	CCNGG	2 cut(s)	78, 155
BmsI	GCATC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	76, 154
BsaWI	WCCGGW	2 cut(s)	140, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	78, 155
BseDI	CCNNGG	2 cut(s)	76, 154
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	141, 249
BsiWI	CGTACG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	63, 270, 303
BspACI	CCGC	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	71, 278
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	76, 154
BssMI	GATC	3 cut(s)	63, 270, 303
BssNI	GRCGYC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	78, 155
Bst4CI	ACNGT	2 cut(s)	23, 220
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	66, 273, 306
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	63, 270, 303
BstNI	CCWGG	2 cut(s)	78, 155
BstSCI	CCNGG	2 cut(s)	76, 153
BstUI	CGCG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	122, 216
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	24
CviJI	RGCY	8 cut(s)	13, 36, 74, 88, 116, 257, 281, 334
CviKI_1	RGCY	8 cut(s)	13, 36, 74, 88, 116, 257, 281, 334
CviQI	GTAC	1 cut(s)	24
DpnI	GATC	3 cut(s)	65, 272, 305
DpnII	GATC	3 cut(s)	63, 270, 303
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	122, 216
EcoRII	CCWGG	2 cut(s)	76, 153
FaiI	YATR	3 cut(s)	19, 186, 234
FaqI	GGGAC	1 cut(s)	337
FauI	CCCGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	260
FspBI	CTAG	2 cut(s)	117, 195
GlaI	GCGC	1 cut(s)	29
HapII	CCGG	2 cut(s)	141, 249
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	4 cut(s)	150, 160, 223, 325
HpaII	CCGG	2 cut(s)	141, 249
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	5 cut(s)	9, 63, 99, 278, 330
Hpy188III	TCNNGA	2 cut(s)	195, 307
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	23, 220
Hsp92I	GRCGYC	1 cut(s)	350
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	63, 270, 303
LmnI	GCTCC	2 cut(s)	254, 295
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	117, 195
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	65, 272, 305
MboI	GATC	3 cut(s)	63, 270, 303
MboII	GAAGA	4 cut(s)	121, 313, 322, 334
MnlI	CCTC	6 cut(s)	3, 174, 183, 207, 261, 286
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	141, 249
MspR9I	CCNGG	2 cut(s)	78, 155
MvaI	CCWGG	2 cut(s)	78, 155
MvnI	CGCG	1 cut(s)	28
NdeII	GATC	3 cut(s)	63, 270, 303
NmuCI	GTSAC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	150, 160, 223, 325
Pfl23II	CGTACG	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	76, 153
PspGI	CCWGG	2 cut(s)	76, 153
PspLI	CGTACG	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	122, 216
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	63, 270, 303
Sau96I	GGNCC	2 cut(s)	122, 216
ScrFI	CCNGG	2 cut(s)	78, 155
SetI	ASST	6 cut(s)	38, 90, 118, 194, 259, 318
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	122, 216
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	117, 195
StyD4I	CCNGG	2 cut(s)	76, 153
TaaI	ACNGT	2 cut(s)	23, 220
TaqI	TCGA	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	150, 160, 223, 325
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	122, 216
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	2 cut(s)	117, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.