Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

28047902 .. 28049619

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGCAGCGTCTCACATATCGTACCCGGCACAGCTACGCCACCAAATCCAACCAACACAGGATCGTCAAAACCCCCGGAGGGAAGCTAGTGTACCAGACCACTAAGAAGAGGGCGAGTGGACCCAAGTGCCCTGTCACTGGCAAGAGGATTCAAGGGATCCCTCACTTGAGACCTGCTGAATATAAGAGGTCTAGATTATCTAGGAATCGGAGGACTGTTAACCGTGCTTATGGTGGCGTATTGTCTGGAGCTGCTGTCAAGGAAAGGATCATCAGGGCCTTTTTGATTGAAGAACAAAAGATTGTGAAAAAGGTGTTGAAGATTCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

11.51

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AclWI	GGATC	4 cut(s)	71, 154, 167, 278
AfaI	GTAC	2 cut(s)	25, 95
AfiI	CCNNNNNNNGG	2 cut(s)	81, 140
AgsI	TTSAA	3 cut(s)	155, 293, 322
AluBI	AGCT	4 cut(s)	36, 88, 254, 360
AluI	AGCT	4 cut(s)	36, 88, 254, 360
Alw26I	GTCTC	2 cut(s)	17, 166
AlwI	GGATC	4 cut(s)	71, 154, 167, 278
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	7, 254
AspS9I	GGNCC	2 cut(s)	122, 279
AsuC2I	CCSGG	2 cut(s)	28, 78
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	159
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbvI	GCAGC	2 cut(s)	19, 241
BcnI	CCSGG	2 cut(s)	28, 78
BcoDI	GTCTC	2 cut(s)	17, 166
BfaI	CTAG	4 cut(s)	89, 195, 204, 361
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	8, 255
BlsI	GCNGC	2 cut(s)	9, 256
Bme1390I	CCNGG	2 cut(s)	28, 78
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 279
BmiI	GGNNCC	2 cut(s)	124, 161
BmrFI	CCNGG	2 cut(s)	28, 78
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	28, 78
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 140
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	81, 140
BseNI	ACTGG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	19, 241
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	28, 78
BslI	CCNNNNNNNGG	2 cut(s)	81, 140
BsmAI	GTCTC	2 cut(s)	17, 166
BsmBI	CGTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	63, 159, 270
BspANI	GGCC	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	124, 161
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	4 cut(s)	71, 154, 167, 278
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	63, 159, 270
Bst4CI	ACNGT	2 cut(s)	220, 227
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	66, 162, 273
BstMAI	GTCTC	2 cut(s)	17, 166
BstMBI	GATC	3 cut(s)	63, 159, 270
BstSCI	CCNGG	2 cut(s)	26, 76
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	19, 241
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	122, 279
Csp6I	GTAC	2 cut(s)	24, 94
CviJI	RGCY	6 cut(s)	36, 88, 254, 281, 350, 360
CviKI_1	RGCY	6 cut(s)	36, 88, 254, 281, 350, 360
CviQI	GTAC	2 cut(s)	24, 94
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	3 cut(s)	65, 161, 272
DpnII	GATC	3 cut(s)	63, 159, 270
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	3 cut(s)	19, 186, 234
Fnu4HI	GCNGC	2 cut(s)	8, 255
Fsp4HI	GCNGC	2 cut(s)	8, 255
FspBI	CTAG	4 cut(s)	89, 195, 204, 361
GluI	GCNGC	2 cut(s)	8, 255
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	28, 78
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	151, 208, 325
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	28, 78
Hpy166II	GTNNAC	3 cut(s)	94, 122, 223
Hpy188I	TCNGA	2 cut(s)	213, 330
Hpy188III	TCNNGA	2 cut(s)	195, 249
Hpy8I	GTNNAC	3 cut(s)	94, 122, 223
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	220, 227
HpyCH4V	TGCA	1 cut(s)	7
HpyF3I	CTNAG	1 cut(s)	105
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	63, 159, 270
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	41, 46, 91, 110, 126, 147, 189, 234, 262
Lsp1109I	GCAGC	2 cut(s)	19, 241
MaeI	CTAG	4 cut(s)	89, 195, 204, 361
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	65, 161, 272
MboI	GATC	3 cut(s)	63, 159, 270
MboII	GAAGA	3 cut(s)	121, 305, 334
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	7 cut(s)	74, 105, 141, 174, 183, 207, 361
MseI	TTAA	1 cut(s)	222
MspI	CCGG	2 cut(s)	28, 78
MspR9I	CCNGG	2 cut(s)	28, 78
NciI	CCSGG	2 cut(s)	28, 78
NdeII	GATC	3 cut(s)	63, 159, 270
NlaIV	GGNNCC	2 cut(s)	124, 161
NmuCI	GTSAC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	151, 208, 325
PkrI	GCNGC	2 cut(s)	9, 256
PspN4I	GGNNCC	2 cut(s)	124, 161
PspPI	GGNCC	2 cut(s)	122, 279
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	25, 95
RsaNI	GTAC	2 cut(s)	24, 94
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	8, 255
Sau3AI	GATC	3 cut(s)	63, 159, 270
Sau96I	GGNCC	2 cut(s)	122, 279
ScrFI	CCNGG	2 cut(s)	28, 78
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	7 cut(s)	38, 90, 178, 194, 256, 318, 362
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SspMI	CTAG	4 cut(s)	89, 195, 204, 361
StyD4I	CCNGG	2 cut(s)	26, 76
TaaI	ACNGT	2 cut(s)	220, 227
TfiI	GAWTC	3 cut(s)	151, 208, 325
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	7, 254
Tsp45I	GTSAC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	4 cut(s)	89, 195, 204, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.