Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

9315305 .. 9318277

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAGACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGTCCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

11.6

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34e	PF01199	1 - 92	7.8e-35	Ribosomal protein L34e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	278
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgeI	ACCGGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	155, 322
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	36, 116
AluI	AGCT	2 cut(s)	36, 116
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	121, 173
ApeKI	GCWGC	1 cut(s)	7
AsiGI	ACCGGT	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	122, 174
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	122, 174
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	123, 175
BshTI	ACCGGT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	123, 175
Bsp143I	GATC	1 cut(s)	270
Bsp68I	TCGCGA	1 cut(s)	28
BspANI	GGCC	2 cut(s)	123, 175
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	62, 220, 236
Bst6I	CTCTTC	2 cut(s)	104, 288
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	180, 336
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	123, 175
BtuMI	TCGCGA	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	122, 174
Csp6I	GTAC	1 cut(s)	184
CspAI	ACCGGT	1 cut(s)	21
CviJI	RGCY	7 cut(s)	36, 116, 123, 175, 335, 350, 359
CviKI_1	RGCY	7 cut(s)	36, 116, 123, 175, 335, 350, 359
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	180, 336
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	104, 288
EarI	CTCTTC	2 cut(s)	104, 288
Eco130I	CCWWGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaiI	YATR	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	123, 175
HapII	CCGG	1 cut(s)	22
HinfI	GANTC	3 cut(s)	73, 159, 240
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	19, 223
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	4 cut(s)	27, 70, 195, 204
Hpy8I	GTNNAC	2 cut(s)	19, 223
HpyCH4III	ACNGT	3 cut(s)	62, 220, 236
HpyCH4V	TGCA	2 cut(s)	7, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	180, 336
Kzo9I	GATC	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	35, 63, 68, 90, 126, 147, 196, 234, 247
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	121, 305, 322
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	67, 249
MnlI	CCTC	6 cut(s)	74, 165, 174, 183, 187, 207
MseI	TTAA	1 cut(s)	361
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	124
NruI	TCGCGA	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	76
PinAI	ACCGGT	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	67, 248
PpsI	GAGTC	2 cut(s)	67, 248
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	122, 174
PstI	CTGCAG	1 cut(s)	259
RruI	TCGCGA	1 cut(s)	28
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	122, 174
SchI	GAGTC	2 cut(s)	67, 249
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	4 cut(s)	38, 85, 118, 194
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	62, 220, 236
TaqI	TCGA	2 cut(s)	50, 291
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseI	GCWGC	1 cut(s)	7
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.