Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Forward (+)

25048292 .. 25050054

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGCAGCGGCTCACATACCGAACGCGTCACAGCTACGCCACCAAATCCAACCAGCACCGCATCGTCAAAACCCCCGGGGGTAAGTTGGTTTATCAGACCACCAAGAAGAGAGCCAGCGGTCCAAAATGCCCTGTTACTGGCAAGAGAATCCAAGGGATTCCTCACTTGAGACCTGCAGAGTACAAGAGGTCTAGATTATCCAGGAACCGCAGGACTGTGAATCGGGCTTATGGTGGTGTATTATCTGGAGGTGCTGTTAGAGAGAGAATTATTCGAGCTTTCTTGGTGGAAGAGCAAAAGATCGTGAAAAAGGTTCTGAAGATCCAAAAGGCCAAGGAAAAGCAGGCCGGCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

11.6

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	28
AciI	CCGC	4 cut(s)	10, 61, 120, 211
AclWI	GGATC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	36, 281
AluI	AGCT	2 cut(s)	36, 281
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	333, 348
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	2 cut(s)	78, 79
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	78, 79
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	8, 11
BlsI	GCNGC	2 cut(s)	9, 12
Bme1390I	CCNGG	3 cut(s)	78, 79, 205
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	78, 79, 205
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	78, 79
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	5 cut(s)	76, 77, 78, 154, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	5 cut(s)	76, 77, 78, 154, 336
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	335, 350
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	78, 351
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	335, 350
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	303, 324
BspACI	CCGC	4 cut(s)	10, 61, 120, 211
BspANI	GGCC	2 cut(s)	335, 350
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	5 cut(s)	76, 77, 78, 154, 336
BssMI	GATC	2 cut(s)	303, 324
BssT1I	CCWWGG	2 cut(s)	154, 336
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	104, 288
BstC8I	GCNNGC	3 cut(s)	118, 348, 352
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	306, 327
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	303, 324
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	3 cut(s)	76, 77, 203
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	335, 350
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	118, 348, 352
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	122
Cfr9I	CCCGGG	1 cut(s)	77
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	7 cut(s)	13, 36, 116, 230, 281, 335, 350
CviKI_1	RGCY	7 cut(s)	13, 36, 116, 230, 281, 335, 350
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	2 cut(s)	305, 326
DpnII	GATC	2 cut(s)	303, 324
Eam1104I	CTCTTC	2 cut(s)	104, 288
EarI	CTCTTC	2 cut(s)	104, 288
Eco130I	CCWWGG	2 cut(s)	154, 336
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	2 cut(s)	154, 336
ErhI	CCWWGG	2 cut(s)	154, 336
FaiI	YATR	2 cut(s)	19, 234
Fnu4HI	GCNGC	2 cut(s)	8, 11
Fsp4HI	GCNGC	2 cut(s)	8, 11
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	8, 11
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	335, 350
HapII	CCGG	2 cut(s)	78, 351
HgaI	GACGC	1 cut(s)	17
HinfI	GANTC	3 cut(s)	150, 160, 223
HpaII	CCGG	2 cut(s)	78, 351
Hpy188I	TCNGA	2 cut(s)	99, 321
Hpy188III	TCNNGA	3 cut(s)	195, 249, 307
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	7, 179
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	303, 324
LguI	GCTCTTC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	2 cut(s)	305, 326
MboI	GATC	2 cut(s)	303, 324
MboII	GAAGA	3 cut(s)	121, 305, 334
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	1 cut(s)	270
MluI	ACGCGT	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	174, 183, 245
MroNI	GCCGGC	1 cut(s)	350
MspA1I	CMGCKG	2 cut(s)	10, 120
MspI	CCGG	2 cut(s)	78, 351
MspR9I	CCNGG	3 cut(s)	78, 79, 205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	28
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	2 cut(s)	78, 79
NdeII	GATC	2 cut(s)	303, 324
NgoMIV	GCCGGC	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	150, 160, 223
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	9, 12
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	8, 11
Sau3AI	GATC	2 cut(s)	303, 324
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	78, 79, 205
SetI	ASST	6 cut(s)	38, 178, 194, 256, 283, 318
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	4 cut(s)	10, 61, 120, 211
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	76, 77, 203
StyI	CCWWGG	2 cut(s)	154, 336
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	270
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	150, 160, 223
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.