Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Forward (+)

26189775 .. 26191404

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTTACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACCAGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGGGTATTCCTCACTTGAGGCCAACTGAGTACAAGAGGTCACGTTTATCAAGAAACAGGAGGACCGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTCGTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAAAGGAAAAGGTTGCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

11.6

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34e	PF01199	1 - 96	2e-37	Ribosomal protein L34e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	95, 185
AfiI	CCNNNNNNNGG	2 cut(s)	140, 292
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	116, 325
AluI	AGCT	2 cut(s)	116, 325
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	122, 216
AvaII	GGWCC	2 cut(s)	122, 216
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	13
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	122, 216
BmgT120I	GGNCC	2 cut(s)	122, 216
BmrFI	CCNGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 292
Bse118I	RCCGGY	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	140, 292
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	140, 292
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	23, 63
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	2 cut(s)	23, 63
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	35, 220, 227
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	105, 180
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	26, 66
BstMBI	GATC	2 cut(s)	23, 63
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	122, 216
Csp6I	GTAC	2 cut(s)	94, 184
CviJI	RGCY	3 cut(s)	116, 175, 325
CviKI_1	RGCY	3 cut(s)	116, 175, 325
CviQI	GTAC	2 cut(s)	94, 184
DdeI	CTNAG	2 cut(s)	105, 180
DpnI	GATC	2 cut(s)	25, 65
DpnII	GATC	2 cut(s)	23, 63
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	122, 216
Eco57I	CTGAAG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	76
FaiI	YATR	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	3 cut(s)	19, 122, 223
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	2 cut(s)	27, 204
Hpy8I	GTNNAC	3 cut(s)	19, 122, 223
HpyAV	CCTTC	3 cut(s)	292, 307, 325
HpyCH4III	ACNGT	3 cut(s)	35, 220, 227
HpyCH4IV	ACGT	2 cut(s)	92, 196
HpyCH4V	TGCA	1 cut(s)	7
HpyF3I	CTNAG	2 cut(s)	105, 180
HpySE526I	ACGT	2 cut(s)	92, 196
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	23, 63
LmnI	GCTCC	2 cut(s)	295, 355
LpnPI	CCDG	9 cut(s)	46, 63, 68, 90, 110, 140, 154, 196, 234
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	92, 196
MaeIII	GTNAC	3 cut(s)	35, 136, 192
MalI	GATC	2 cut(s)	25, 65
MboI	GATC	2 cut(s)	23, 63
MboII	GAAGA	2 cut(s)	121, 322
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	74, 165, 174, 183, 207, 286
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	23, 63
NmuCI	GTSAC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	122, 216
RsaI	GTAC	2 cut(s)	95, 185
RsaNI	GTAC	2 cut(s)	94, 184
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	23, 63
Sau96I	GGNCC	2 cut(s)	122, 216
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	9 cut(s)	85, 95, 118, 127, 194, 199, 318, 327, 348
SinI	GGWCC	2 cut(s)	122, 216
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	35, 220, 227
TaiI	ACGT	2 cut(s)	95, 199
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	192
VpaK11BI	GGWCC	2 cut(s)	122, 216
XagI	CCTNNNNNAGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.