pycom06g17090

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001880
Physical Location & Seq
Reverse (-)
21129817 .. 21131565
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17090.1

Sequence Viewer

Length: 366 bp
ATGGTTCAGAGGCTCACATACCGTACGCGCCACAGCTATGCAACCAAGTCGAACCAGCATCGGATCGTCAAAACCCCTGGCGGAAAGCTCGTGTATCAGACCTCTAAGAAGAGAGCAAGTGGACCCAAATGTCCTGTTACTGGAAAGAGAATCCAAGGGATTCCTCACTTGAGACCCGCTGAATATAAGAGGTCTAGACTATCAAGGAACAGGAGGACTGTGAACCGTGCCTATGGAGGTGTGCTGTCCGGTGGAGCTGTCAGAGAGAGGATCATCCGAGCCTTTTTGGTGGAGGAGCAGAAGATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCAAAAGAAAAGCAGGCTTCAAAAAGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34e

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

11.6

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34e PF01199 1 - 96 3.9e-38 Ribosomal protein L34e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 129
AccII CGCG 1 cut(s) 28
AciI CCGC 2 cut(s) 81, 177
AclWI GGATC 2 cut(s) 71, 278
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 322, 354
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 36, 88, 257
AluI AGCT 3 cut(s) 36, 88, 257
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 2 cut(s) 71, 278
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BauI CACGAG 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 76, 154
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 76, 154
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 249
BsiWI CGTACG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 166
Bso31I GGTCTC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 63, 270
BspACI CCGC 2 cut(s) 81, 177
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 2 cut(s) 71, 278
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 76, 154
BssMI GATC 2 cut(s) 63, 270
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 154
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 23, 220, 227
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 2 cut(s) 66, 273
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 63, 270
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 6 cut(s) 13, 36, 88, 257, 281, 350
CviKI_1 RGCY 6 cut(s) 13, 36, 88, 257, 281, 350
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 65, 272
DpnII GATC 2 cut(s) 63, 270
DrdI GACNNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaiI YATR 4 cut(s) 19, 39, 186, 234
FauI CCCGC 1 cut(s) 184
FokI GGATG 1 cut(s) 260
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 29
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 3 cut(s) 150, 160, 325
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 122, 223
Hpy188I TCNGA 6 cut(s) 9, 63, 99, 263, 278, 330
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 122, 223
HpyAV CCTTC 2 cut(s) 307, 325
HpyCH4III ACNGT 3 cut(s) 23, 220, 227
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 105
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 63, 270
LmnI GCTCC 2 cut(s) 254, 295
LpnPI CCDG 8 cut(s) 63, 68, 90, 126, 147, 196, 262, 332
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 65, 272
MboI GATC 2 cut(s) 63, 270
MboII GAAGA 4 cut(s) 121, 313, 322, 334
MnlI CCTC 8 cut(s) 3, 112, 174, 183, 207, 230, 261, 286
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 28
NdeII GATC 2 cut(s) 63, 270
NlaIV GGNNCC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 150, 160, 325
Pfl23II CGTACG 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspLI CGTACG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 36
Sau3AI GATC 2 cut(s) 63, 270
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 78
SetI ASST 7 cut(s) 38, 90, 104, 194, 241, 259, 318
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 2 cut(s) 81, 177
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 23, 220, 227
TaqI TCGA 1 cut(s) 50
TfiI GAWTC 3 cut(s) 150, 160, 325
VpaK11BI GGWCC 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 194
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.