Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

2523205 .. 2524572

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTGCAGCGGCTCACGTACCGGAAGCGTCACAGCTACGCCACCAAGTCCAACCAGCACCGCATCGTCAAAACCCCCGGTGGGAAATTGATCTATCAGACCACCAAGAAGAGAGCCAGCGGCCCCAAATGCCCTGTTACTGGCAAGAGAATCCAAGGGATTCCTCACTTGAGACCGGCTGAGTACAAGAGGTCTAGACTATCTAGGAACCGCAGGACTGTGAACCGGGCCTATGGTGGTGTATTGTCTGGAGGTGCTGTTAGGGAGAGGATCATTAGAGCTTTCTTGGTGGAAGAGCAGAAAATTGTCAAGAAGGTTTTGAAGATCCAAAAGGCCAAGGAAAAGCAGGCGGAGAAAGGAGCTAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

11.57

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	10, 61, 120, 211, 350
AclWI	GGATC	2 cut(s)	278, 319
AfaI	GTAC	2 cut(s)	20, 185
AfiI	CCNNNNNNNGG	2 cut(s)	81, 140
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	4 cut(s)	36, 281, 362, 369
AluI	AGCT	4 cut(s)	36, 281, 362, 369
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	278, 319
AoxI	GGCC	3 cut(s)	121, 228, 333
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	122, 228
AsuC2I	CCSGG	2 cut(s)	78, 227
BbvI	GCAGC	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	78, 227
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	195, 204, 363
BisI	GCNGC	3 cut(s)	8, 11, 121
BlsI	GCNGC	3 cut(s)	9, 12, 122
Bme1390I	CCNGG	2 cut(s)	78, 227
BmgT120I	GGNCC	2 cut(s)	122, 228
BmiI	GGNNCC	2 cut(s)	124, 209
BmrFI	CCNGG	2 cut(s)	78, 227
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	78, 227
BsaAI	YACGTR	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	76, 154, 336
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 140
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	76, 154, 336
BseLI	CCNNNNNNNGG	2 cut(s)	81, 140
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	123, 230, 335
BsiSI	CCGG	4 cut(s)	22, 78, 176, 226
BslI	CCNNNNNNNGG	2 cut(s)	81, 140
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	123, 230, 335
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	90, 270, 324
BspACI	CCGC	5 cut(s)	10, 61, 120, 211, 350
BspANI	GGCC	3 cut(s)	123, 230, 335
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	124, 209
BspPI	GGATC	2 cut(s)	278, 319
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	76, 154, 336
BssMI	GATC	3 cut(s)	90, 270, 324
BssT1I	CCWWGG	2 cut(s)	154, 336
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	104, 288
BstBAI	YACGTR	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	118, 348
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	93, 273, 327
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	90, 270, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	76, 225
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	123, 230, 335
Cac8I	GCNNGC	2 cut(s)	118, 348
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	122, 228
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	19, 184
CviQI	GTAC	2 cut(s)	19, 184
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	92, 272, 326
DpnII	GATC	3 cut(s)	90, 270, 324
Eam1104I	CTCTTC	2 cut(s)	104, 288
EarI	CTCTTC	2 cut(s)	104, 288
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	154, 336
Eco31I	GGTCTC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	154, 336
ErhI	CCWWGG	2 cut(s)	154, 336
FaiI	YATR	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	8, 11, 121
Fsp4HI	GCNGC	3 cut(s)	8, 11, 121
FspBI	CTAG	3 cut(s)	195, 204, 363
GluI	GCNGC	3 cut(s)	8, 11, 121
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	123, 230, 335
HapII	CCGG	4 cut(s)	22, 78, 176, 226
HgaI	GACGC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	150, 160
HpaII	CCGG	4 cut(s)	22, 78, 176, 226
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	195, 249, 310
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	90, 270, 324
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	359, 366
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	3 cut(s)	195, 204, 363
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	3 cut(s)	92, 272, 326
MboI	GATC	3 cut(s)	90, 270, 324
MboII	GAAGA	3 cut(s)	121, 305, 334
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	2 cut(s)	86, 303
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	174, 183, 245, 261
MspA1I	CMGCKG	2 cut(s)	10, 120
MspI	CCGG	4 cut(s)	22, 78, 176, 226
MspR9I	CCNGG	2 cut(s)	78, 227
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	2 cut(s)	78, 227
NdeII	GATC	3 cut(s)	90, 270, 324
NlaIV	GGNNCC	2 cut(s)	124, 209
NmuCI	GTSAC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	150, 160
PkrI	GCNGC	3 cut(s)	9, 12, 122
Ppu21I	YACGTR	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	124, 209
PspPI	GGNCC	2 cut(s)	122, 228
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	2 cut(s)	20, 185
RsaNI	GTAC	2 cut(s)	19, 184
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	3 cut(s)	8, 11, 121
Sau3AI	GATC	3 cut(s)	90, 270, 324
Sau96I	GGNCC	2 cut(s)	122, 228
ScrFI	CCNGG	2 cut(s)	78, 227
SetI	ASST	8 cut(s)	20, 38, 194, 256, 283, 318, 364, 371
SfaNI	GCATC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	86, 303
SsiI	CCGC	5 cut(s)	10, 61, 120, 211, 350
SspMI	CTAG	3 cut(s)	195, 204, 363
StyD4I	CCNGG	2 cut(s)	76, 225
StyI	CCWWGG	2 cut(s)	154, 336
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	20
TasI	AATT	2 cut(s)	86, 303
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	13, 123
TfiI	GAWTC	2 cut(s)	150, 160
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	3 cut(s)	195, 204, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.