Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001880

Physical Location & Seq

Genomic Coordinates Reverse (-)

5389598 .. 5390666

Gene Structure 1069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCAGCGTCTCGTGTATCGCTCGCGTCACAGCTACGCCACCAAGTCCAACCAGCACAGGATCGTCAAAACCCCTGGAGGGAAGCTAGTGTACCAGACCACTAAGAAGAGGGCAAGTGGACCCAAGTGTCCTGTTACTGGCAAGAGGATTCAAGGGATCCCTCATTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGTCTAGGAATCGGAGGACTGTCAATCGTGCTTATGGAGGAGTATTGTCTGGAGCTGCCGTCAAGGAGAGGATTATCCGCGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAAAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCTATCTGCCAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34e

Protein Analysis

121

Amino Acids

13.72

Weight (kDa)

11.51

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34e	PF01199	1 - 96	7.8e-38	Ribosomal protein L34e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26880 AT1G69620 AT3G28900
fragaria_vesca	FvH4_4g31370 FvH4_5g14990 FvH4_6g48700
malus_domestica	MD09G1050600.v1.1 MD13G1072400.v1.1 MD14G1199600.v1.1 MD16G1073200.v1.1 MD17G1050700.v1.1
prunus_persica	Prupe.1G274500_v2.0.a1 Prupe.3G268200_v2.0.a1 Prupe.5G192900_v2.0.a1
pyrus_communis	pycom06g17090 pycom111g04170 pycom13g06490 pycom14g16540 pycom16g06330 pycom17g04560
rosa_chinensis	RchiOBHm_Chr1g0362681 RchiOBHm_Chr2g0168621 RchiOBHm_Chr4g0439881 RchiOBHm_Chr7g0181331
rosa_laevigata	RLG00000005198 RLG00000006230 RLG00000021791
rosa_multiflora	Rmu_sc0000497.1_g000006 Rmu_sc0001147.1_g000004 Rmu_sc0002416.1_g000010 Rmu_sc0009047.1_g000006 Rmu_sc0016669.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272130 Rroxscaffold_5G00380800
rosa_rugosa	Rorug02G0534200 Rorug04G0322100 Rorug06G0440300
rosa_samantha	Rh2AG604800 Rh2CG586000 Rh2DG628400 Rh7AG042200 Rh7CG043500 Rh7DG042100
rosa_wichuraiana	Rw2G050130 Rw4G031890 Rw7G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AccII	CGCG	2 cut(s)	28, 279
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	3 cut(s)	71, 154, 167
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	81, 140
AgsI	TTSAA	3 cut(s)	155, 293, 322
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	36, 88, 254, 346
AluI	AGCT	4 cut(s)	36, 88, 254, 346
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	71, 154, 167
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	159
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	3 cut(s)	89, 195, 204
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	124, 161
BmrFI	CCNGG	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	99, 270
Bpu10I	CCTNAGC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 140
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	81, 140
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	28, 279
BshFI	GGCC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	81, 140
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	63, 159
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	28, 279
BspLI	GGNNCC	2 cut(s)	124, 161
BspPI	GGATC	3 cut(s)	71, 154, 167
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	63, 159
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	201, 220
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	26, 177
BstDEI	CTNAG	2 cut(s)	105, 336
BstFNI	CGCG	2 cut(s)	28, 279
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	2 cut(s)	66, 162
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	63, 159
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstUI	CGCG	2 cut(s)	28, 279
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	26, 177
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	6 cut(s)	36, 88, 175, 254, 335, 346
CviKI_1	RGCY	6 cut(s)	36, 88, 175, 254, 335, 346
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	105, 336
DpnI	GATC	2 cut(s)	65, 161
DpnII	GATC	2 cut(s)	63, 159
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco147I	AGGCCT	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	89, 195, 204
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	99, 270
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	3 cut(s)	151, 208, 325
Hpy166II	GTNNAC	2 cut(s)	94, 122
Hpy188I	TCNGA	2 cut(s)	213, 330
Hpy188III	TCNNGA	2 cut(s)	195, 249
Hpy8I	GTNNAC	2 cut(s)	94, 122
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	201, 220
HpyF3I	CTNAG	2 cut(s)	105, 336
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	63, 159
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	46, 63, 68, 90, 110, 126, 147, 189, 234
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	89, 195, 204
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	2 cut(s)	65, 161
MboI	GATC	2 cut(s)	63, 159
MboII	GAAGA	3 cut(s)	121, 305, 334
MflI	RGATCY	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	9 cut(s)	74, 105, 141, 165, 174, 183, 207, 230, 261
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	28, 279
NdeII	GATC	2 cut(s)	63, 159
NlaIV	GGNNCC	2 cut(s)	124, 161
NmuCI	GTSAC	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	151, 208, 325
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	124, 161
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	63, 159
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	6 cut(s)	38, 90, 194, 256, 318, 348
SinI	GGWCC	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	3 cut(s)	89, 195, 204
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	201, 220
TfiI	GAWTC	3 cut(s)	151, 208, 325
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	3 cut(s)	89, 195, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.