Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018869

Physical Location & Seq

Genomic Coordinates Forward (+)

83286954 .. 83288027

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG604600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCCGACCTGCTCAGTACTTCTACCAACGCCTGGTCTTCGTCTTATTCTCAAAGGTTCCCCTTCCCCTAACCCTAAACCTACCAAGACCTTCCCTGATCTTATCCAAACAACGGCTTTCCCAAGATGCTTGAAGGTTCGAGAATCTAGGGTTTTGGTACCTGTTATGAGAGCGAGCGTTGGCCCCTACAATGAAAATTGTGGAAGACGTGACCACTGGAAGAGATCAGTGGTGCAAAATCAATCTGAGCTAGTTCCGGCGGCAGAAGCGTCCACAAATAAGAGCTCCCTGATGAAATTTGCTGATTCTATTTGGTCATTTGTTTTCGGCGACGGTAATCCAAACAAAGGAGTTCATGAAGAGAAGAGATGGAAGTTCGTTGAGCAATACATAACCTCCAAGGGTGGTGTTATAGCAGCCGAAGAGCTTGCTCCATATCTTGATGGTTTTGAAACTTCAGGGAAAATTGAGGGCAACCCAATCAATGAGGAAAAGTTCATGTTATTACCTGTTCTAAAAAGATATGAGGGCCATCCTGTAACTGATGAAGATGGGAACGTTCTTTACCGGTTTACGCCACTGTCCAAAGATAAGGAATTGCTTGACATTGAGCATAAATTCTTCATCGAGAAAAAATGGCAATTCAGTAAGACTAGCTTTCTTGAGAGAGTAAAGGTTGTCTTATTTGGTTTAGTTCTCCGGGATGTCCTTTCTTATCTTACTAACGAATGGTTACTTATGAAAAGCGGTAGTACTAAGTTATGGGCAGCCGTACTACTCCAGATTTCTGTTATTTCGTTTTTTGTATTGATTCCTTTGCTCAGGTTTATGTTATTTTGCCTCATCTTTCTTTATAAAAATGCTGGCATTGAAAAAAGTAACCGAGCAAGACAACAGGCTGCTGAAGCACTTGAATCGCCTAATCTCCTGCTAAGACAAAAGATCGCCAGTGCTCGGAATATGGCTGGAATTCTGAAGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.28

Weight (kDa)

9.46

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48680
rosa_laevigata	RLG00000021789
rosa_multiflora	Rmu_sc0002416.1_g000012
rosa_roxburghii	Rroxscaffold_2G00082860
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604600 Rh2BG617600 Rh2CG585800 Rh2DG628200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
Acc36I	ACCTGC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	2 cut(s)	260, 747
AclI	AACGTT	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	296, 617, 969
AcuI	CTGAAG	2 cut(s)	441, 924
AfaI	GTAC	5 cut(s)	18, 159, 754, 774, 980
AfiI	CCNNNNNNNGG	4 cut(s)	32, 112, 347, 954
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	4 cut(s)	133, 452, 872, 914
AjiI	CACGTC	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	250, 285, 427, 657
AluI	AGCT	4 cut(s)	250, 285, 427, 657
Alw21I	GWGCWC	2 cut(s)	287, 955
AoxI	GGCC	2 cut(s)	181, 529
ApeKI	GCWGC	3 cut(s)	416, 767, 899
ApoI	RAATTY	3 cut(s)	296, 617, 969
AsiGI	ACCGGT	1 cut(s)	567
Asp718I	GGTACC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	182, 529
AsuC2I	CCSGG	1 cut(s)	701
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	29, 211
Bbv12I	GWGCWC	2 cut(s)	287, 955
BbvI	GCAGC	3 cut(s)	428, 779, 886
BccI	CCATC	4 cut(s)	363, 437, 540, 545
BceAI	ACGGC	2 cut(s)	129, 755
BcgI	CGANNNNNNTGC	4 cut(s)	410, 444, 897, 931
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	701
BfaI	CTAG	3 cut(s)	147, 251, 654
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	4 cut(s)	261, 417, 768, 900
BlsI	GCNGC	4 cut(s)	262, 418, 769, 901
BmcAI	AGTACT	3 cut(s)	18, 754, 980
Bme1390I	CCNGG	2 cut(s)	33, 701
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	182, 529
BmiI	GGNNCC	3 cut(s)	58, 159, 184
BmrFI	CCNGG	2 cut(s)	33, 701
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	29, 211
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 112, 347, 954
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	2 cut(s)	221, 948
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	532, 709
BseLI	CCNNNNNNNGG	4 cut(s)	32, 112, 347, 954
BseMII	CTCAG	3 cut(s)	27, 237, 835
BseNI	ACTGG	2 cut(s)	221, 948
BseXI	GCAGC	3 cut(s)	428, 779, 886
BshFI	GGCC	2 cut(s)	183, 531
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	287, 955
BsiSI	CCGG	3 cut(s)	257, 568, 700
BslI	CCNNNNNNNGG	4 cut(s)	32, 112, 347, 954
BsnI	GGCC	2 cut(s)	183, 531
Bsp1286I	GDGCHC	2 cut(s)	287, 955
Bsp143I	GATC	3 cut(s)	97, 224, 942
BspACI	CCGC	2 cut(s)	260, 747
BspANI	GGCC	2 cut(s)	183, 531
BspCNI	CTCAG	3 cut(s)	26, 238, 834
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	58, 159, 184
BspMI	ACCTGC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	221, 948
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	97, 224, 942
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	335, 582
Bst6I	CTCTTC	4 cut(s)	215, 354, 359, 417
BstC8I	GCNNGC	3 cut(s)	175, 429, 865
BstDEI	CTNAG	5 cut(s)	13, 246, 756, 821, 932
BstF5I	GGATG	2 cut(s)	532, 709
BstKTI	GATC	3 cut(s)	100, 227, 945
BstMBI	GATC	3 cut(s)	97, 224, 942
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 905
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 699
BstV1I	GCAGC	3 cut(s)	428, 779, 886
BstV2I	GAAGAC	2 cut(s)	29, 211
BsuRI	GGCC	2 cut(s)	183, 531
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	532, 709
BtsIMutI	CAGTG	4 cut(s)	214, 234, 578, 955
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	175, 429, 865
CciI	TCATGA	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	182, 529
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	5 cut(s)	17, 158, 753, 773, 979
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	2 cut(s)	356, 499
CviQI	GTAC	5 cut(s)	17, 158, 753, 773, 979
DdeI	CTNAG	5 cut(s)	13, 246, 756, 821, 932
DpnI	GATC	3 cut(s)	99, 226, 944
DpnII	GATC	3 cut(s)	97, 224, 942
Eam1104I	CTCTTC	4 cut(s)	215, 354, 359, 417
EarI	CTCTTC	4 cut(s)	215, 354, 359, 417
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	441, 924
EcoICRI	GAGCTC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	359, 502
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 665, 697
FatI	CATG	2 cut(s)	355, 498
Fnu4HI	GCNGC	4 cut(s)	261, 417, 768, 900
FokI	GGATG	2 cut(s)	519, 716
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	261, 417, 768, 900
FspBI	CTAG	3 cut(s)	147, 251, 654
GluI	GCNGC	4 cut(s)	261, 417, 768, 900
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	183, 531
HapII	CCGG	3 cut(s)	257, 568, 700
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	359, 502
HinfI	GANTC	4 cut(s)	143, 305, 811, 914
HpaII	CCGG	3 cut(s)	257, 568, 700
Hpy166II	GTNNAC	2 cut(s)	273, 573
Hpy188I	TCNGA	3 cut(s)	247, 957, 975
Hpy188III	TCNNGA	6 cut(s)	140, 356, 440, 628, 662, 781
Hpy8I	GTNNAC	2 cut(s)	273, 573
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	72, 100, 127
HpyCH4III	ACNGT	2 cut(s)	335, 582
HpyCH4IV	ACGT	2 cut(s)	208, 558
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 905
HpyF3I	CTNAG	5 cut(s)	13, 246, 756, 821, 932
HpySE526I	ACGT	2 cut(s)	208, 558
Hsp92II	CATG	2 cut(s)	359, 502
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	97, 224, 942
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	290, 436
Lsp1109I	GCAGC	3 cut(s)	428, 779, 886
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	3 cut(s)	147, 251, 654
MaeII	ACGT	2 cut(s)	208, 558
MaeIII	GTNAC	4 cut(s)	209, 538, 732, 878
MalI	GATC	3 cut(s)	99, 226, 944
MboI	GATC	3 cut(s)	97, 224, 942
MboII	GAAGA	8 cut(s)	29, 216, 232, 371, 376, 434, 560, 613
MhlI	GDGCHC	2 cut(s)	287, 955
MluCI	AATT	7 cut(s)	196, 296, 465, 596, 617, 641, 969
MnlI	CCTC	5 cut(s)	406, 463, 481, 520, 851
MspI	CCGG	3 cut(s)	257, 568, 700
MspR9I	CCNGG	2 cut(s)	33, 701
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	266, 905
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	3 cut(s)	97, 224, 942
NlaIII	CATG	2 cut(s)	359, 502
NlaIV	GGNNCC	3 cut(s)	58, 159, 184
NmuCI	GTSAC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	143, 305, 811, 914
PflMI	CCANNNNNTGG	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	699
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	4 cut(s)	262, 418, 769, 901
PsiI	TTATAA	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	58, 159, 184
PspPI	GGNCC	2 cut(s)	182, 529
PsrI	GAACNNNNNNTAC	2 cut(s)	548, 580
RsaI	GTAC	5 cut(s)	18, 159, 754, 774, 980
RsaNI	GTAC	5 cut(s)	17, 158, 753, 773, 979
SacI	GAGCTC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	4 cut(s)	261, 417, 768, 900
Sau3AI	GATC	3 cut(s)	97, 224, 942
Sau96I	GGNCC	2 cut(s)	182, 529
ScaI	AGTACT	3 cut(s)	18, 754, 980
ScrFI	CCNGG	2 cut(s)	33, 701
SduI	GDGCHC	2 cut(s)	287, 955
SfaNI	GCATC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	7 cut(s)	196, 296, 465, 596, 617, 641, 969
SsiI	CCGC	2 cut(s)	260, 747
SspMI	CTAG	3 cut(s)	147, 251, 654
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	31, 699
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	335, 582
TaiI	ACGT	2 cut(s)	211, 561
TaqI	TCGA	2 cut(s)	139, 627
TasI	AATT	7 cut(s)	196, 296, 465, 596, 617, 641, 969
TatI	WGTACW	3 cut(s)	16, 752, 978
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	143, 305, 811, 914
TscAI	CASTG	4 cut(s)	221, 234, 585, 955
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	416, 767, 899
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	8 cut(s)	207, 308, 344, 372, 487, 561, 613, 755
TspRI	CASTG	4 cut(s)	221, 234, 585, 955
Van91I	CCANNNNNTGG	1 cut(s)	32
XapI	RAATTY	3 cut(s)	296, 617, 969
XspI	CTAG	3 cut(s)	147, 251, 654
ZrmI	AGTACT	3 cut(s)	18, 754, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.