Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018869

Physical Location & Seq

Genomic Coordinates Reverse (-)

5583181 .. 5585675

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTGGGAATTGCTCGACCAAAATCATAATCGGACGCCGCTTCTCCACCACGCCGAACCTCTCCACGCCCGAATTCTCCGGCGGCCGGAAAGCGGCCTTGCAAGTGGTAACGATCGGGCGAGAGGTCTCGGCAGAGCAGCTTGCACCGCCGGCATCCGCATTCGGCGACTACTCCTAGTTTGTTTGAGATCGCTTCGTGCCATAACTTTTAAACCAGAATCCAATGCCGACCTGCTCAGTACTTCTACCAACGCCTCGTCTTCGTCTTATTCTCAAAGGTTCACCTTCCCTAACCCTAAACCTACCAAGACCTTCCCTGATCTTATCCAAAGAACGGCTTTCCCAAGATGCTTGAAGGTTCGAGAATCTAGGGTTTTGGTACCCGTTATGAGAGCGAGCGTTGGCCCCTACAATGACAATTGTGGAAGACGTGACCACTGGAAGAGATCAGTGGTGCAAAATCAATCTGAGCTAGTTCCGGCTGCAGAAGCGTCCACAAATAAGAGCTCCCTGATGAAATTTGCTGATTCTATTTGGTCATTTGTTTTCGGCTACGGTAATCCAAACAAAGGAGTTCATGAAGAGAAGAGATGGAAGTTCGTTGAGCAATACATAAACTCCAAGGGTGGTGTTATAGCAGCCGAAGAGCTTGCTCCATATCTTGATGGTTTAGAAACTTCAGGGAAAATTGAGGGCAACCCAATCAATGAGGAAAAGTTCATGTTTCCTGTTCTAAAAAGATATGAGGGCCATCCTGTAACTGATGAAGATGGGAACGTTCTTTACCGGTTTACGCCGCTGTCCAAAGATAAGGAATTGCTTGACGTTGAGCACAAATTCTTCATGGAGAAAAAATGGCAATTCAGTAAGACTAGCTTTCTTGAGAGAGTAAAGGTTGTCTTATTTGGTTTAGTTCTCCGGGATGTCCTTTCTTATCTTACTAACGAATGGTTACTTATGAAAAGCGGTAGTACTAAGTTATGGGCAGCCGTAATACTCCAGATTTCTGTTATTTCGTTTTTTGTATTGATTCCTTTGCTCAGGTTTATGTTATTTTGCCTCATCTTTCTTTATAAAAATGCTGGCATTGAAAAACGTAACCGAGCAAGACAACAGGCTGCAGAAGCACTTGAATCGCCTAATCTCCTGCTAAGACAAAAGATCGCCAGTGCTCGGAATATGGCTGGAATTCTGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

45.64

Weight (kDa)

9.81

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48680
rosa_laevigata	RLG00000021789
rosa_multiflora	Rmu_sc0002416.1_g000012
rosa_roxburghii	Rroxscaffold_2G00082860
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604600 Rh2BG617600 Rh2CG585800 Rh2DG628200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1074
Acc36I	ACCTGC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	7 cut(s)	38, 82, 93, 147, 157, 797, 966
AclI	AACGTT	1 cut(s)	777
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	4 cut(s)	72, 518, 836, 1188
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	4 cut(s)	241, 381, 973, 1199
AfiI	CCNNNNNNNGG	5 cut(s)	85, 92, 334, 569, 1173
AgeI	ACCGGT	1 cut(s)	786
AgsI	TTSAA	3 cut(s)	355, 1091, 1133
AjiI	CACGTC	1 cut(s)	431
AluBI	AGCT	5 cut(s)	140, 472, 507, 649, 876
AluI	AGCT	5 cut(s)	140, 472, 507, 649, 876
Alw21I	GWGCWC	3 cut(s)	509, 834, 1174
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	4 cut(s)	83, 94, 403, 748
ApeKI	GCWGC	5 cut(s)	137, 482, 638, 986, 1118
ApoI	RAATTY	4 cut(s)	72, 518, 836, 1188
AsiGI	ACCGGT	1 cut(s)	786
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	404, 748
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	252, 433
Bbv12I	GWGCWC	3 cut(s)	509, 834, 1174
BbvI	GCAGC	5 cut(s)	149, 469, 650, 998, 1105
BccI	CCATC	4 cut(s)	585, 659, 759, 764
BceAI	ACGGC	2 cut(s)	351, 974
BcgI	CGANNNNNNTGC	4 cut(s)	632, 666, 1116, 1150
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	4 cut(s)	176, 369, 473, 873
BfmI	CTRYAG	2 cut(s)	483, 1119
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	9 cut(s)	38, 83, 94, 138, 483, 639, 797, 987, 1119
BlsI	GCNGC	9 cut(s)	39, 84, 95, 139, 484, 640, 798, 988, 1120
BmcAI	AGTACT	3 cut(s)	241, 973, 1199
Bme1390I	CCNGG	1 cut(s)	920
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	404, 748
BmiI	GGNNCC	2 cut(s)	381, 406
BmrFI	CCNGG	1 cut(s)	920
BmsI	GCATC	2 cut(s)	162, 338
BpiI	GAAGAC	2 cut(s)	252, 433
BpmI	CTGGAG	1 cut(s)	983
Bpu10I	CCTNAGC	1 cut(s)	1040
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	621
BsaWI	WCCGGW	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 92, 334, 569, 1173
Bse118I	RCCGGY	2 cut(s)	149, 786
Bse1I	ACTGG	2 cut(s)	443, 1167
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	153, 751, 928
BseLI	CCNNNNNNNGG	5 cut(s)	85, 92, 334, 569, 1173
BseMII	CTCAG	3 cut(s)	250, 459, 1054
BseNI	ACTGG	2 cut(s)	443, 1167
BseX3I	CGGCCG	1 cut(s)	83
BseXI	GCAGC	5 cut(s)	149, 469, 650, 998, 1105
Bsh1285I	CGRYCG	2 cut(s)	86, 115
BshFI	GGCC	4 cut(s)	85, 96, 405, 750
BshNI	GGYRCC	1 cut(s)	379
BshTI	ACCGGT	1 cut(s)	786
BsiEI	CGRYCG	2 cut(s)	86, 115
BsiHKAI	GWGCWC	3 cut(s)	509, 834, 1174
BsiSI	CCGG	6 cut(s)	79, 86, 150, 479, 787, 919
BslI	CCNNNNNNNGG	5 cut(s)	85, 92, 334, 569, 1173
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	4 cut(s)	85, 96, 405, 750
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	509, 834, 1174
Bsp143I	GATC	5 cut(s)	112, 188, 319, 446, 1161
BspACI	CCGC	7 cut(s)	38, 82, 93, 147, 157, 797, 966
BspANI	GGCC	4 cut(s)	85, 96, 405, 750
BspCNI	CTCAG	3 cut(s)	249, 460, 1053
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	381, 406
BspMAI	CTGCAG	2 cut(s)	487, 1123
BspMI	ACCTGC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	149, 786
BsrI	ACTGG	2 cut(s)	443, 1167
BssAI	RCCGGY	2 cut(s)	149, 786
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	5 cut(s)	112, 188, 319, 446, 1161
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	4 cut(s)	437, 576, 581, 639
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	5 cut(s)	142, 151, 397, 651, 1084
BstDEI	CTNAG	5 cut(s)	236, 468, 975, 1040, 1151
BstF5I	GGATG	3 cut(s)	153, 751, 928
BstKTI	GATC	5 cut(s)	115, 191, 322, 449, 1164
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	112, 188, 319, 446, 1161
BstMCI	CGRYCG	2 cut(s)	86, 115
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 150, 488, 1124
BstSCI	CCNGG	1 cut(s)	918
BstSFI	CTRYAG	2 cut(s)	483, 1119
BstV1I	GCAGC	5 cut(s)	149, 469, 650, 998, 1105
BstV2I	GAAGAC	2 cut(s)	252, 433
BstZI	CGGCCG	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	85, 96, 405, 750
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	153, 751, 928
BtsIMutI	CAGTG	3 cut(s)	436, 456, 1174
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	5 cut(s)	142, 151, 397, 651, 1084
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	2 cut(s)	149, 786
Cfr13I	GGNCC	2 cut(s)	404, 748
CseI	GACGC	2 cut(s)	43, 480
Csp6I	GTAC	4 cut(s)	240, 380, 972, 1198
CspAI	ACCGGT	1 cut(s)	786
CviAII	CATG	3 cut(s)	578, 721, 844
CviQI	GTAC	4 cut(s)	240, 380, 972, 1198
DdeI	CTNAG	5 cut(s)	236, 468, 975, 1040, 1151
DpnI	GATC	5 cut(s)	114, 190, 321, 448, 1163
DpnII	GATC	5 cut(s)	112, 188, 319, 446, 1161
DraI	TTTAAA	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	83
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	4 cut(s)	437, 576, 581, 639
EarI	CTCTTC	4 cut(s)	437, 576, 581, 639
Ecl136II	GAGCTC	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	507
EcoRI	GAATTC	2 cut(s)	72, 1188
EcoT14I	CCWWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	3 cut(s)	581, 724, 847
FalI	AAGNNNNNCTT	6 cut(s)	322, 354, 860, 892, 884, 916
FatI	CATG	3 cut(s)	577, 720, 843
Fnu4HI	GCNGC	9 cut(s)	38, 83, 94, 138, 483, 639, 797, 987, 1119
FokI	GGATG	3 cut(s)	140, 738, 935
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	9 cut(s)	38, 83, 94, 138, 483, 639, 797, 987, 1119
FspBI	CTAG	4 cut(s)	176, 369, 473, 873
GluI	GCNGC	9 cut(s)	38, 83, 94, 138, 483, 639, 797, 987, 1119
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	4 cut(s)	85, 96, 405, 750
HapII	CCGG	6 cut(s)	79, 86, 150, 479, 787, 919
HgaI	GACGC	2 cut(s)	43, 480
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	581, 724, 847
HinfI	GANTC	5 cut(s)	218, 365, 527, 1030, 1133
HpaII	CCGG	6 cut(s)	79, 86, 150, 479, 787, 919
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	282, 495, 792
Hpy188I	TCNGA	4 cut(s)	33, 469, 1176, 1194
Hpy188III	TCNNGA	5 cut(s)	362, 578, 662, 881, 1000
Hpy8I	GTNNAC	3 cut(s)	282, 495, 792
HpyAV	CCTTC	3 cut(s)	295, 322, 349
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	4 cut(s)	430, 777, 825, 1096
HpyCH4V	TGCA	5 cut(s)	101, 144, 457, 485, 1121
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 150, 488, 1124
HpyF3I	CTNAG	5 cut(s)	236, 468, 975, 1040, 1151
HpySE526I	ACGT	4 cut(s)	430, 777, 825, 1096
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	581, 724, 847
KpnI	GGTACC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	112, 188, 319, 446, 1161
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	512, 658
Lsp1109I	GCAGC	5 cut(s)	149, 469, 650, 998, 1105
LweI	GCATC	2 cut(s)	162, 338
MaeI	CTAG	4 cut(s)	176, 369, 473, 873
MaeII	ACGT	4 cut(s)	430, 777, 825, 1096
MaeIII	GTNAC	5 cut(s)	107, 431, 757, 951, 1097
MalI	GATC	5 cut(s)	114, 190, 321, 448, 1163
MboI	GATC	5 cut(s)	112, 188, 319, 446, 1161
MboII	GAAGA	8 cut(s)	252, 438, 454, 593, 598, 656, 779, 832
MfeI	CAATTG	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	509, 834, 1174
MluCI	AATT	9 cut(s)	8, 72, 418, 518, 687, 815, 836, 860, 1188
MnlI	CCTC	7 cut(s)	69, 116, 265, 685, 703, 739, 1070
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	6 cut(s)	79, 86, 150, 479, 787, 919
MspR9I	CCNGG	1 cut(s)	920
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	146, 150, 488, 1124
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	920
NdeII	GATC	5 cut(s)	112, 188, 319, 446, 1161
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	581, 724, 847
NlaIV	GGNNCC	2 cut(s)	381, 406
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	431
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	5 cut(s)	218, 365, 527, 1030, 1133
PfoI	TCCNGGA	1 cut(s)	918
PinAI	ACCGGT	1 cut(s)	786
PkrI	GCNGC	9 cut(s)	39, 84, 95, 139, 484, 640, 798, 988, 1120
Ple19I	CGATCG	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	509
Psp1406I	AACGTT	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	381, 406
PspPI	GGNCC	2 cut(s)	404, 748
PsrI	GAACNNNNNNTAC	2 cut(s)	767, 799
PstI	CTGCAG	2 cut(s)	487, 1123
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	4 cut(s)	241, 381, 973, 1199
RsaNI	GTAC	4 cut(s)	240, 380, 972, 1198
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	9 cut(s)	38, 83, 94, 138, 483, 639, 797, 987, 1119
Sau3AI	GATC	5 cut(s)	112, 188, 319, 446, 1161
Sau96I	GGNCC	2 cut(s)	404, 748
ScaI	AGTACT	3 cut(s)	241, 973, 1199
ScrFI	CCNGG	1 cut(s)	920
SduI	GDGCHC	3 cut(s)	509, 834, 1174
SfaNI	GCATC	2 cut(s)	162, 338
SfcI	CTRYAG	2 cut(s)	483, 1119
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	9 cut(s)	8, 72, 418, 518, 687, 815, 836, 860, 1188
SsiI	CCGC	7 cut(s)	38, 82, 93, 147, 157, 797, 966
SspMI	CTAG	4 cut(s)	176, 369, 473, 873
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	918
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	4 cut(s)	433, 780, 828, 1099
TaqI	TCGA	2 cut(s)	15, 361
TasI	AATT	9 cut(s)	8, 72, 418, 518, 687, 815, 836, 860, 1188
TatI	WGTACW	3 cut(s)	239, 971, 1197
TauI	GCSGC	4 cut(s)	40, 85, 96, 799
TfiI	GAWTC	5 cut(s)	218, 365, 527, 1030, 1133
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	3 cut(s)	443, 456, 1174
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	5 cut(s)	137, 482, 638, 986, 1118
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	7 cut(s)	530, 566, 594, 709, 780, 832, 974
TspRI	CASTG	3 cut(s)	443, 456, 1174
XapI	RAATTY	4 cut(s)	72, 518, 836, 1188
XspI	CTAG	4 cut(s)	176, 369, 473, 873
ZrmI	AGTACT	3 cut(s)	241, 973, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.