Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018869

Physical Location & Seq

Genomic Coordinates Forward (+)

78337356 .. 78338336

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCCGATCTGCTCAGTACTTCTACCAACGCCTCGTCTTCGTCTTACTCTCAAAGGCTCACCTTCCCCTAACCCTAAACCTACCAAGACCTTCCCTGATCTTATCCAAACAACGGCTTTCCCAAGATGCTTGAAGGTTCGAGAATCTAGGGTTTTGGTACCCGTTATGAGAGCGAGCGTTGGCCCCTACAATGACAATTGTGGAAGACGTGACCATTGGAAGAGATCAGTGGTGCAAAATCAATCTGAGCTAGTTCCGGCGGCAGAAGCGTCCACAAATAAGAGCTCCCTGATGAAATTTGCTGATTCTATTTGGTCATTTGTTTTCGGCGACGGTAATCCAAACAAAGGAGTTCATGAAGAGAAGAGATGGAAGTTCGTTGAGCAATACATAACCTCCAAGGGTGGTGTCATAGCAGCCGAAGAGCTTGCTCCATATCTTGATGGTTTAGAAACTTCAAGGAAAATTGAGGGCAACCCAATCAATGAGGAAAAGTTCATGTTACCTGTTCTAAAAAGATATGAGGGCCATCCTGTAACTGATGAAGATGGGAACGTTCTTTACCGGTTTATGCCACTGTCCAAAGATAAGGAATTGCTTGACGTTGAGCATAAATTCTTCATGGAGAAAAAATGGCAATTCAGTAAGACTAGCTTTCTTGAGAGAGTAAAGGTTGTCTTACTTGGTCTAGTTCTCAGGGATGTGCTTTCTTATCTTACTAACGAATGGTTACTTATGAAAAGCGGTAGTACTAAGTTATGGGCAGCCGTACTACTCCAGATTTCTGTTATTTCGTTTTTTGTATTGATTCCTTTGCTCAGGTTTATGTTATTTTGCCTCATCTTTCTTTATAAAAATGCTGGCATTGAAAAACGTAACCGAGCAAGACAACAGGCTGCTGAAGCACTTGAATCGCCTAATCTCCTGCTAAGACAAAAGATCGCCAGTGCTAGGAATATGGCTGGAATTCTGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

37.22

Weight (kDa)

9.64

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48680
rosa_laevigata	RLG00000021789
rosa_multiflora	Rmu_sc0002416.1_g000012
rosa_roxburghii	Rroxscaffold_2G00082860
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604600 Rh2BG617600 Rh2CG585800 Rh2DG628200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	260, 744
AclI	AACGTT	1 cut(s)	555
AcsI	RAATTY	3 cut(s)	296, 614, 966
AcuI	CTGAAG	1 cut(s)	921
AfaI	GTAC	5 cut(s)	18, 159, 751, 771, 977
AfiI	CCNNNNNNNGG	3 cut(s)	112, 347, 951
AgeI	ACCGGT	1 cut(s)	564
AgsI	TTSAA	4 cut(s)	133, 459, 869, 911
AjiI	CACGTC	1 cut(s)	209
AluBI	AGCT	4 cut(s)	250, 285, 427, 654
AluI	AGCT	4 cut(s)	250, 285, 427, 654
Alw21I	GWGCWC	1 cut(s)	287
AoxI	GGCC	2 cut(s)	181, 526
ApeKI	GCWGC	3 cut(s)	416, 764, 896
ApoI	RAATTY	3 cut(s)	296, 614, 966
AsiGI	ACCGGT	1 cut(s)	564
Asp718I	GGTACC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	182, 526
AsuHPI	GGTGA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	29, 211
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	428, 776, 883
BccI	CCATC	4 cut(s)	363, 437, 537, 542
BceAI	ACGGC	2 cut(s)	129, 752
BcgI	CGANNNNNNTGC	4 cut(s)	410, 444, 894, 928
BfaI	CTAG	5 cut(s)	147, 251, 651, 689, 951
BisI	GCNGC	4 cut(s)	261, 417, 765, 897
BlsI	GCNGC	4 cut(s)	262, 418, 766, 898
BmcAI	AGTACT	3 cut(s)	18, 751, 977
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	182, 526
BmiI	GGNNCC	2 cut(s)	159, 184
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	29, 211
BpmI	CTGGAG	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 347, 951
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	529, 706
BseLI	CCNNNNNNNGG	3 cut(s)	112, 347, 951
BseMII	CTCAG	4 cut(s)	27, 237, 709, 832
BseNI	ACTGG	1 cut(s)	945
BseXI	GCAGC	3 cut(s)	428, 776, 883
BshFI	GGCC	2 cut(s)	183, 528
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	257, 565
BslI	CCNNNNNNNGG	3 cut(s)	112, 347, 951
BsnI	GGCC	2 cut(s)	183, 528
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	6, 97, 224, 939
BspACI	CCGC	2 cut(s)	260, 744
BspANI	GGCC	2 cut(s)	183, 528
BspCNI	CTCAG	4 cut(s)	26, 238, 708, 831
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	159, 184
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	945
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	4 cut(s)	6, 97, 224, 939
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	335, 579
Bst6I	CTCTTC	4 cut(s)	215, 354, 359, 417
BstC8I	GCNNGC	3 cut(s)	175, 429, 862
BstDEI	CTNAG	6 cut(s)	13, 246, 695, 753, 818, 929
BstF5I	GGATG	2 cut(s)	529, 706
BstKTI	GATC	4 cut(s)	9, 100, 227, 942
BstMBI	GATC	4 cut(s)	6, 97, 224, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 902
BstV1I	GCAGC	3 cut(s)	428, 776, 883
BstV2I	GAAGAC	2 cut(s)	29, 211
BsuRI	GGCC	2 cut(s)	183, 528
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	529, 706
BtsIMutI	CAGTG	3 cut(s)	234, 575, 952
Cac8I	GCNNGC	3 cut(s)	175, 429, 862
CciI	TCATGA	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	182, 526
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	5 cut(s)	17, 158, 750, 770, 976
CspAI	ACCGGT	1 cut(s)	564
CviAII	CATG	3 cut(s)	356, 499, 622
CviQI	GTAC	5 cut(s)	17, 158, 750, 770, 976
DdeI	CTNAG	6 cut(s)	13, 246, 695, 753, 818, 929
DpnI	GATC	4 cut(s)	8, 99, 226, 941
DpnII	GATC	4 cut(s)	6, 97, 224, 939
Eam1104I	CTCTTC	4 cut(s)	215, 354, 359, 417
EarI	CTCTTC	4 cut(s)	215, 354, 359, 417
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	921
EcoICRI	GAGCTC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	966
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	359, 502, 625
FalI	AAGNNNNNCTT	4 cut(s)	638, 670, 662, 694
FatI	CATG	3 cut(s)	355, 498, 621
Fnu4HI	GCNGC	4 cut(s)	261, 417, 765, 897
FokI	GGATG	2 cut(s)	516, 713
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	261, 417, 765, 897
FspBI	CTAG	5 cut(s)	147, 251, 651, 689, 951
GluI	GCNGC	4 cut(s)	261, 417, 765, 897
GsuI	CTGGAG	1 cut(s)	761
HaeIII	GGCC	2 cut(s)	183, 528
HapII	CCGG	2 cut(s)	257, 565
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	359, 502, 625
HinfI	GANTC	4 cut(s)	143, 305, 808, 911
HpaII	CCGG	2 cut(s)	257, 565
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	247, 972
Hpy188III	TCNNGA	5 cut(s)	140, 356, 440, 659, 778
Hpy8I	GTNNAC	1 cut(s)	273
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	72, 100, 127
HpyCH4III	ACNGT	2 cut(s)	335, 579
HpyCH4IV	ACGT	4 cut(s)	208, 555, 603, 874
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 902
HpyF3I	CTNAG	6 cut(s)	13, 246, 695, 753, 818, 929
HpySE526I	ACGT	4 cut(s)	208, 555, 603, 874
Hsp92II	CATG	3 cut(s)	359, 502, 625
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	6, 97, 224, 939
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	290, 436
Lsp1109I	GCAGC	3 cut(s)	428, 776, 883
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	5 cut(s)	147, 251, 651, 689, 951
MaeII	ACGT	4 cut(s)	208, 555, 603, 874
MaeIII	GTNAC	5 cut(s)	209, 501, 535, 729, 875
MalI	GATC	4 cut(s)	8, 99, 226, 941
MboI	GATC	4 cut(s)	6, 97, 224, 939
MboII	GAAGA	8 cut(s)	29, 216, 232, 371, 376, 434, 557, 610
MfeI	CAATTG	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	7 cut(s)	196, 296, 465, 593, 614, 638, 966
MnlI	CCTC	6 cut(s)	42, 406, 463, 481, 517, 848
MspI	CCGG	2 cut(s)	257, 565
MunI	CAATTG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	266, 902
NdeII	GATC	4 cut(s)	6, 97, 224, 939
NlaIII	CATG	3 cut(s)	359, 502, 625
NlaIV	GGNNCC	2 cut(s)	159, 184
NmuCI	GTSAC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	143, 305, 808, 911
PinAI	ACCGGT	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	262, 418, 766, 898
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	159, 184
PspPI	GGNCC	2 cut(s)	182, 526
PsrI	GAACNNNNNNTAC	2 cut(s)	545, 577
RsaI	GTAC	5 cut(s)	18, 159, 751, 771, 977
RsaNI	GTAC	5 cut(s)	17, 158, 750, 770, 976
SacI	GAGCTC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	4 cut(s)	261, 417, 765, 897
Sau3AI	GATC	4 cut(s)	6, 97, 224, 939
Sau96I	GGNCC	2 cut(s)	182, 526
ScaI	AGTACT	3 cut(s)	18, 751, 977
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	7 cut(s)	196, 296, 465, 593, 614, 638, 966
SsiI	CCGC	2 cut(s)	260, 744
SspMI	CTAG	5 cut(s)	147, 251, 651, 689, 951
SstI	GAGCTC	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	335, 579
TaiI	ACGT	4 cut(s)	211, 558, 606, 877
TaqI	TCGA	1 cut(s)	139
TasI	AATT	7 cut(s)	196, 296, 465, 593, 614, 638, 966
TatI	WGTACW	3 cut(s)	16, 749, 975
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	143, 305, 808, 911
TscAI	CASTG	3 cut(s)	234, 582, 952
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	416, 764, 896
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	7 cut(s)	308, 344, 372, 487, 558, 610, 752
TspRI	CASTG	3 cut(s)	234, 582, 952
XapI	RAATTY	3 cut(s)	296, 614, 966
XspI	CTAG	5 cut(s)	147, 251, 651, 689, 951
ZrmI	AGTACT	3 cut(s)	18, 751, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.