FvH4_6g49470

Protein SYS1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010851
Physical Location & Seq
Reverse (-)
37050373 .. 37050837
465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49470.t1

Sequence Viewer

Length: 465 bp
ATGTTCTACGGCGCATTAGTATGGGACCCTTGGCTCATTGTTGTCCAAATTGTGTGCCTTCAATGTTTACACTATCTCACTCATGGATTCTTCTTGACAGTTCTCATTGGGGCTCGCGTGTCCCGAATGAGCCTCGCATACTACTTTGATTTTGCTACTCTCACTGTTTTCACTGATACCGGGCGGTGCGTCATTGCTTCATTTGTGCTCACTGCCCTGGCAGGCGCTGTATATCTGCTCCTTCTCATAGAGAGGTCAAGAAAGTGCCTAGACTTTTCAGTCACCCTATATATTGTCCATCTTTTGATATGCATCTGTTATGGTGGTTGGCCTTCTTCAACAACATGGTGGGCTGTGAATGGCACTGGCATTGGAGTGATGACTTTGTTGGGTGAATATCTCTGCATTAGACGTGAACTGCAGGAGATCAAGATCCCTGCAGGACGATATCGCTTAAACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SYS1

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

8.5

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYS1 PF09801 6 - 144 3.8e-43 Integral membrane protein S linking to the trans Golgi network
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79985 AT1G79985 AT1G79985
fragaria_vesca FvH4_6g31060 FvH4_6g49470
malus_domestica MD09G1213900.v1.1 MD17G1196000.v1.1
prunus_persica Prupe.3G071900_v2.0.a1 Prupe.3G071900_v2.0.a1
pyrus_communis pycom09g13080
rosa_chinensis RchiOBHm_Chr2g0137751
rosa_laevigata RLG00000019673
rosa_multiflora Rmu_sc0008270.1_g000012
rosa_roxburghii Rroxscaffold_2G00106870
rosa_rugosa Rorug02G0344700.1 Rorug02G0344800 Rorug02G0344900
rosa_samantha Rh2BG400000 Rh2DG414800
rosa_wichuraiana Rw2G032150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 184
AclI AACGTT 1 cut(s) 459
AclWI GGATC 1 cut(s) 427
AgsI TTSAA 2 cut(s) 62, 339
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 14, 227
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 274, 404
AvaII GGWCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 419, 438
BfoI RGCGCY 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 181, 218
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 26, 27
BmrFI CCNGG 2 cut(s) 181, 218
BmsI GCATC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 2 cut(s) 311, 431
BsaJI CCNNGG 2 cut(s) 29, 216
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 2 cut(s) 311, 431
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 29, 216
BseJI GATNNNNATC 2 cut(s) 311, 431
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 38, 106
BsmFI GGGAC 2 cut(s) 38, 106
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 115, 210
Bsp143I GATC 2 cut(s) 426, 432
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 331
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 26, 27
BspMAI CTGCAG 2 cut(s) 423, 442
BspPI GGATC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 29, 216
BssMI GATC 2 cut(s) 426, 432
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 100, 166
BstC8I GCNNGC 2 cut(s) 115, 223
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 14, 227
BstKTI GATC 2 cut(s) 429, 435
BstMBI GATC 2 cut(s) 426, 432
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 179, 216
BstSFI CTRYAG 2 cut(s) 419, 438
BstUI CGCG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 1 cut(s) 331
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 4 cut(s) 162, 171, 210, 363
Cac8I GCNNGC 2 cut(s) 115, 223
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 14, 227
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 178
CviAII CATG 2 cut(s) 83, 345
CviJI RGCY 5 cut(s) 34, 113, 132, 331, 353
CviKI_1 RGCY 5 cut(s) 34, 113, 132, 331, 353
DpnI GATC 2 cut(s) 428, 434
DpnII GATC 2 cut(s) 426, 432
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 86, 348
FaqI GGGAC 2 cut(s) 38, 106
FatI CATG 2 cut(s) 82, 344
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 13, 226
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 14, 227
Hin1II CATG 2 cut(s) 86, 348
Hin6I GCGC 2 cut(s) 12, 225
HinP1I GCGC 2 cut(s) 12, 225
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 274, 404
Hpy166II GTNNAC 2 cut(s) 68, 416
Hpy188III TCNNGA 4 cut(s) 94, 123, 258, 430
Hpy8I GTNNAC 2 cut(s) 68, 416
HpyAV CCTTC 3 cut(s) 68, 251, 342
HpyCH4III ACNGT 2 cut(s) 100, 166
HpyCH4IV ACGT 2 cut(s) 412, 459
HpyCH4V TGCA 4 cut(s) 312, 405, 421, 440
HpySE526I ACGT 2 cut(s) 412, 459
Hsp92II CATG 2 cut(s) 86, 348
HspAI GCGC 2 cut(s) 12, 225
KflI GGGWCCC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 426, 432
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 8 cut(s) 193, 203, 207, 230, 351, 407, 426, 450
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 412, 459
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 428, 434
MboI GATC 2 cut(s) 426, 432
MboII GAAGA 2 cut(s) 82, 327
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 2 cut(s) 115, 210
MluCI AATT 1 cut(s) 48
MnlI CCTC 2 cut(s) 143, 246
Mph1103I ATGCAT 1 cut(s) 314
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 2 cut(s) 19, 374
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 181, 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 117
NciI CCSGG 1 cut(s) 181
NdeII GATC 2 cut(s) 426, 432
NlaIII CATG 2 cut(s) 86, 348
NlaIV GGNNCC 2 cut(s) 26, 27
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 25
Psp1406I AACGTT 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 26, 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PstI CTGCAG 2 cut(s) 423, 442
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 432
RseI CAYNNNNRTG 2 cut(s) 19, 374
SaqAI TTAA 1 cut(s) 455
Sau3AI GATC 2 cut(s) 426, 432
Sau96I GGNCC 1 cut(s) 25
SbfI CCTGCAGG 1 cut(s) 442
ScrFI CCNGG 2 cut(s) 181, 218
SdaI CCTGCAGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 115, 210
SetI ASST 3 cut(s) 257, 415, 462
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 2 cut(s) 419, 438
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 19, 374
Sse8387I CCTGCAGG 1 cut(s) 442
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 179, 216
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 100, 166
TaiI ACGT 2 cut(s) 415, 462
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 4 cut(s) 169, 178, 217, 370
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 4 cut(s) 169, 178, 217, 370
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.