Rorug02G0344900

Protein SYS1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010851
Physical Location & Seq
Forward (+)
43058182 .. 43062051
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0344900.1

Sequence Viewer

Length: 429 bp
ATGGTTTTGAGTCGGAGCAGTGAGGACCGGTTCGAGATCGCGTTCTTCGACGTGGAGACGACGGTGCCGACCCGACCTGGTCAGGGCTTCGCCTTATTGGAATTCGGATCCAAACCGGACTTCACCTTCCCCTTCAACAACCGCAATTTCTCCGGTCGGGTTCTCAGAATGATGTTGGAAGATATGAAGATGGATGAGGCGTCTGAAGAGAAAATTATGCAAAAAATGAAGAGGCTGATATTGAGGAGCTCATCAAAGCAGTTGCATATCACGTGGCAAAGTAATTGTCAGTGGAACAGCAGTTGGAGAGATGGGCACTACATATCTGCTCTTGGTGATGATAACTTGAACAGAGATTTTGCTGTACAACAGTTGAAGCTTAGCCAGCCTGACACAATGATCAGGGATATGTTGACTATCTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SYS1

Protein Analysis

142

Amino Acids

16.59

Weight (kDa)

6.11

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79985 AT1G79985 AT1G79985
fragaria_vesca FvH4_6g31060 FvH4_6g49470
malus_domestica MD09G1213900.v1.1 MD17G1196000.v1.1
prunus_persica Prupe.3G071900_v2.0.a1 Prupe.3G071900_v2.0.a1
pyrus_communis pycom09g13080
rosa_chinensis RchiOBHm_Chr2g0137751
rosa_laevigata RLG00000019673
rosa_multiflora Rmu_sc0008270.1_g000012
rosa_roxburghii Rroxscaffold_2G00106870
rosa_rugosa Rorug02G0344700.1 Rorug02G0344800 Rorug02G0344900
rosa_samantha Rh2BG400000 Rh2DG414800
rosa_wichuraiana Rw2G032150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 102, 115
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 225
AcvI CACGTG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 136, 349, 376
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 249, 379
AluI AGCT 2 cut(s) 249, 379
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 102, 115
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AsiGI ACCGGT 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 115, 347
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 318
BamHI GGATCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 2 cut(s) 184, 305
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 66, 109
BmrFI CCNGG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 200
BsaWI WCCGGW 3 cut(s) 27, 115, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 27
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 3 cut(s) 28, 116, 153
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 251, 318
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 3 cut(s) 36, 107, 399
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 66, 109
BspPI GGATC 2 cut(s) 102, 115
BspT107I GGYRCC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 36, 107, 399
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 64, 372
Bst6I CTCTTC 2 cut(s) 201, 224
BstACI GRCGYC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 364
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 2 cut(s) 164, 380
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 3 cut(s) 39, 110, 402
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 3 cut(s) 36, 107, 399
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 296
Cac8I GCNNGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 189
CsiI ACCWGGT 1 cut(s) 76
Csp6I GTAC 1 cut(s) 365
CspAI ACCGGT 1 cut(s) 27
CviJI RGCY 6 cut(s) 87, 235, 249, 379, 384, 388
CviKI_1 RGCY 6 cut(s) 87, 235, 249, 379, 384, 388
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 164, 380
DpnI GATC 3 cut(s) 38, 109, 401
DpnII GATC 3 cut(s) 36, 107, 399
Eam1104I CTCTTC 2 cut(s) 201, 224
EarI CTCTTC 2 cut(s) 201, 224
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 225
Eco72I CACGTG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 50
FaiI YATR 5 cut(s) 185, 218, 267, 323, 410
FbaI TGATCA 1 cut(s) 399
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 251
HapII CCGG 3 cut(s) 28, 116, 153
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 28, 116, 153
HphI GGTGA 2 cut(s) 115, 347
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 4 cut(s) 15, 107, 167, 205
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 414
Hpy99I CGWCG 2 cut(s) 53, 64
HpyAV CCTTC 2 cut(s) 136, 142
HpyCH4III ACNGT 2 cut(s) 64, 372
HpyCH4IV ACGT 2 cut(s) 51, 272
HpyCH4V TGCA 2 cut(s) 220, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 164, 380
HpySE526I ACGT 2 cut(s) 51, 272
Hsp92I GRCGYC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 3 cut(s) 36, 107, 399
LmnI GCTCC 2 cut(s) 15, 246
LpnPI CCDG 9 cut(s) 41, 63, 68, 90, 129, 166, 388, 398, 402
MabI ACCWGGT 1 cut(s) 76
MaeII ACGT 2 cut(s) 51, 272
MalI GATC 3 cut(s) 38, 109, 401
MboI GATC 3 cut(s) 36, 107, 399
MboII GAAGA 5 cut(s) 37, 191, 199, 218, 241
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 2 cut(s) 251, 318
MluCI AATT 4 cut(s) 101, 145, 213, 283
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 2 cut(s) 156, 284
MnlI CCTC 4 cut(s) 16, 190, 225, 237
MspI CCGG 3 cut(s) 28, 116, 153
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 3 cut(s) 36, 107, 399
NlaIV GGNNCC 2 cut(s) 66, 109
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 65
PflFI GACNNNGTC 1 cut(s) 78
PinAI ACCGGT 1 cut(s) 27
PleI GAGTC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 76
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 66, 109
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 78
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SacI GAGCTC 1 cut(s) 251
Sau3AI GATC 3 cut(s) 36, 107, 399
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 251, 318
SetI ASST 6 cut(s) 54, 79, 128, 251, 275, 381
SexAI ACCWGGT 1 cut(s) 76
SinI GGWCC 1 cut(s) 25
Sse9I AATT 4 cut(s) 101, 145, 213, 283
SsiI CCGC 1 cut(s) 142
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 64, 372
TaiI ACGT 2 cut(s) 54, 275
TaqI TCGA 2 cut(s) 33, 48
TasI AATT 4 cut(s) 101, 145, 213, 283
TatI WGTACW 1 cut(s) 364
TscAI CASTG 2 cut(s) 25, 296
TspDTI ATGAA 2 cut(s) 200, 242
TspRI CASTG 2 cut(s) 25, 296
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.