Prupe.3G071900_v2.0.a1

Protein SYS1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010851
Physical Location & Seq
Forward (+)
5155163 .. 5158175
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G071900.2

Sequence Viewer

Length: 459 bp
ATGTTCTATGGTACATTGGTATGGGACCCCTGGCTCATTGTTGTCCAAATTGTGTGCCTTCAATGTTTGTATTATCTCACTCTTGGGTTCTTCTTGTCAATTCTTGTTGGGACTCGCGTGTCCCGAATGAGCCTCGTGTATTTCTTTGACTATGCTACTCTCACTGTCTCCACGGTCACTGGGTGGTGCGTCATTGCTTCGTTTATGCTCAGTGCACTTGCAGGCGCTGGATATCTGCTTCTTCTGATTGAGAGGGCAAAGAAGTGCTTAGATTTTTCAGCCACCGTCTACATTGTACATCTCTTTATATGCATTTTTTATGGGGGTTGGCCTTCCTCAATAACATGGTGGGTTGTGAATGGTACTGGAATTGCAGTGATGGCTCTGCTGGGTGAATATCTCTGCATTAGACGTGAACTGAAGGAGATCCCTATAACACGATTTCGTTCAAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SYS1

Protein Analysis

153

Amino Acids

17.27

Weight (kDa)

8.56

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79985 AT1G79985 AT1G79985
fragaria_vesca FvH4_6g31060 FvH4_6g49470
malus_domestica MD09G1213900.v1.1 MD17G1196000.v1.1
prunus_persica Prupe.3G071900_v2.0.a1 Prupe.3G071900_v2.0.a1
pyrus_communis pycom09g13080
rosa_chinensis RchiOBHm_Chr2g0137751
rosa_laevigata RLG00000019673
rosa_multiflora Rmu_sc0008270.1_g000012
rosa_roxburghii Rroxscaffold_2G00106870
rosa_rugosa Rorug02G0344700.1 Rorug02G0344800 Rorug02G0344900
rosa_samantha Rh2BG400000 Rh2DG414800
rosa_wichuraiana Rw2G032150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 117
AclWI GGATC 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 3 cut(s) 13, 297, 364
AgsI TTSAA 2 cut(s) 62, 450
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 26, 27
BmrFI CCNGG 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 29, 171
Bse1I ACTGG 2 cut(s) 184, 370
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 29, 171
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 2 cut(s) 184, 370
BseSI GKGCMC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 3 cut(s) 38, 106, 124
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 3 cut(s) 38, 106, 124
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 1 cut(s) 426
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 26, 27
BspPI GGATC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 2 cut(s) 184, 370
BssECI CCNNGG 2 cut(s) 29, 171
BssMI GATC 1 cut(s) 426
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 166, 175, 286
BstAUI TGTACA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 209, 268
BstDSI CCRYGG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 4 cut(s) 162, 177, 217, 381
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 12, 296, 363
CviAII CATG 1 cut(s) 345
CviJI RGCY 5 cut(s) 34, 132, 281, 331, 383
CviKI_1 RGCY 5 cut(s) 34, 132, 281, 331, 383
CviQI GTAC 3 cut(s) 12, 296, 363
DdeI CTNAG 2 cut(s) 209, 268
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
DraIII CACNNNGTG 1 cut(s) 183
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eco32I GATATC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 314
FaeI CATG 1 cut(s) 348
FaiI YATR 9 cut(s) 9, 22, 153, 206, 308, 310, 321, 346, 434
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 3 cut(s) 38, 106, 124
FatI CATG 1 cut(s) 344
FblI GTMKAC 1 cut(s) 288
GlaI GCGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 331
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 215, 289, 416
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 3 cut(s) 215, 289, 416
HpyAV CCTTC 3 cut(s) 68, 342, 415
HpyCH4III ACNGT 3 cut(s) 166, 175, 286
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 215, 221, 312, 374, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 2 cut(s) 209, 268
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 1 cut(s) 225
KflI GGGWCCC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 426
LpnPI CCDG 7 cut(s) 16, 43, 165, 207, 213, 351, 374
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 2 cut(s) 82, 233
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 48, 99, 369
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 143, 246, 346
Mph1103I ATGCAT 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 1 cut(s) 426
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 2 cut(s) 26, 27
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 26, 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 3 cut(s) 13, 297, 364
RsaNI GTAC 3 cut(s) 12, 296, 363
RseI CAYNNNNRTG 1 cut(s) 19
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 217
SetI ASST 1 cut(s) 415
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 3 cut(s) 48, 99, 369
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 166, 175, 286
TaiI ACGT 1 cut(s) 415
TasI AATT 3 cut(s) 48, 99, 369
TatI WGTACW 1 cut(s) 295
TscAI CASTG 4 cut(s) 169, 184, 217, 381
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 4 cut(s) 169, 184, 217, 381
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.