MD17G1196000.v1.1

Protein SYS1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010851
Physical Location & Seq
Forward (+)
23475787 .. 23478456
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1196000.v1.1.491

Sequence Viewer

Length: 459 bp
ATGTTCTATGGTACATTGGTATGGGACCCTTGGCTCATTGTTGTCCAAATTGTGTGCCTTCAATGTTTATACTATCTCACTCTGGGGTTCTTCTTGTCTATTCTTGTTGGCACTCGCGTGTCTCGAATGAGCCTAGTGTATTTCTTTGACTATGCCACTCTCACTATCTCCACGGTCACCGGGTGGTGTGTCATTGGTTCCTATCTGCTCAGTGCACTTGCAGGCGCTGGATATCTGCTTCTTCTGATTGAGAGGGCAAAGAAGTGCTTAGATTTTTCAGCCACCCTATACATTGTACATCTCTTTATATGCATCGCTTATGGGGGTTGGCCTTCGTCAATGACATGGTGGGTTGTGAATGTTACTGGAGTTGCAGTGATGGCTTTGCTAGGTGAATATCTCTGCATTAGACGTGAACTGCGCGAGATTCCTATAACACGATATCGTGCAAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SYS1

Protein Analysis

153

Amino Acids

17.28

Weight (kDa)

8.55

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYS1 PF09801 6 - 144 1e-46 Integral membrane protein S linking to the trans Golgi network
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79985 AT1G79985 AT1G79985
fragaria_vesca FvH4_6g31060 FvH4_6g49470
malus_domestica MD09G1213900.v1.1 MD17G1196000.v1.1
prunus_persica Prupe.3G071900_v2.0.a1 Prupe.3G071900_v2.0.a1
pyrus_communis pycom09g13080
rosa_chinensis RchiOBHm_Chr2g0137751
rosa_laevigata RLG00000019673
rosa_multiflora Rmu_sc0008270.1_g000012
rosa_roxburghii Rroxscaffold_2G00106870
rosa_rugosa Rorug02G0344700.1 Rorug02G0344800 Rorug02G0344900
rosa_samantha Rh2BG400000 Rh2DG414800
rosa_wichuraiana Rw2G032150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 117, 423
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 2 cut(s) 13, 297
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 413
AleI CACNNNNGTG 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 213
AspLEI GCGC 2 cut(s) 227, 423
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 169, 404
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 373
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 2 cut(s) 134, 389
BfoI RGCGCY 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 3 cut(s) 26, 27, 199
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 29, 171
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse1I ACTGG 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 29, 171
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 117, 423
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 295
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 2 cut(s) 117, 423
BspLI GGNNCC 3 cut(s) 26, 27, 199
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 29, 171
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 209, 268
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 175
BstFNI CGCG 2 cut(s) 117, 423
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 227, 423
BstMAI GTCTC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 117, 423
BsuRI GGCC 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 298
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 217, 381
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 227, 423
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 12, 296
CviAII CATG 1 cut(s) 345
CviJI RGCY 5 cut(s) 34, 132, 281, 331, 383
CviKI_1 RGCY 5 cut(s) 34, 132, 281, 331, 383
CviQI GTAC 2 cut(s) 12, 296
DdeI CTNAG 2 cut(s) 209, 268
DraIII CACNNNGTG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 29
Eco32I GATATC 2 cut(s) 233, 443
Eco47I GGWCC 1 cut(s) 25
Eco91I GGTNACC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 175
EcoRV GATATC 2 cut(s) 233, 443
EcoT14I CCWWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 344
FspBI CTAG 2 cut(s) 134, 389
GlaI GCGC 2 cut(s) 226, 422
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 180
HhaI GCGC 2 cut(s) 227, 423
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 2 cut(s) 225, 421
HinP1I GCGC 2 cut(s) 225, 421
HinfI GANTC 1 cut(s) 427
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 169, 404
Hpy166II GTNNAC 2 cut(s) 215, 416
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 2 cut(s) 215, 416
HpyAV CCTTC 2 cut(s) 68, 342
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 215, 221, 312, 374, 405, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 2 cut(s) 209, 268
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 2 cut(s) 225, 421
KflI GGGWCCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 68, 193, 207, 213, 351
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 134, 389
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 175, 361
MboII GAAGA 2 cut(s) 82, 233
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 48
MnlI CCTC 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 314
MslI CAYNNNNRTG 2 cut(s) 19, 116
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MvnI CGCG 2 cut(s) 117, 423
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 181
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 3 cut(s) 26, 27, 199
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 175
PspN4I GGNNCC 3 cut(s) 26, 27, 199
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 2 cut(s) 13, 297
RsaNI GTAC 2 cut(s) 12, 296
RseI CAYNNNNRTG 2 cut(s) 19, 116
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 217
SetI ASST 2 cut(s) 394, 415
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 19, 116
Sse9I AATT 1 cut(s) 48
SspMI CTAG 2 cut(s) 134, 389
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 1 cut(s) 427
TscAI CASTG 2 cut(s) 217, 381
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 2 cut(s) 217, 381
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 2 cut(s) 134, 389
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.