FvH4_6g49490

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018067
Physical Location & Seq
Reverse (-)
37054038 .. 37066649
12612 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49490.t6

Sequence Viewer

Length: 1254 bp
ATGGCTTCATCCTCAACTTATGACGTGTATTTGAGCTTCAGGGATCCAGACAAAGGCATCACTTTCGACCTGTATGATGCTTTGATGCGTGGTGGATTAAAGGCATATTTAGGTGACACAGATCTTTTAATTGGAGATGGCATTTCCCCAACGCTGCTTAAAGCAATCCAAAGGTCTAGAATTTGTGTCATCGTTATTTCACAGAATTATGTATCTTCGTCATGGTGTCTTGCTCAACTGGTGTGGATCATGGAATTATGGAGAAGGGAAGATAGATTGGTTTTGCCAGTATTTTATAATGTCGATCCATCCGATGTCAGAAAACAGAAGCGTTATTTTGGTGAGGCACTAGAGAAGCATCGTCGTTTCGGTCGGAGAGACCAAACAACCATGCTTGATTGGAGGGAGGCTCTCACTCAAGTTGCCAACATCTGCGGCTGGGTTGCAAACAATTATAGGGATGACATAGATCTAATTATTGACATTGTAAAGTCTATCCAAAGTAAAGGACTTCCGACGAGGCTGAACATTTCCATCTATCCCCTCAGATATGATATGTGTGATGAATATCTCGAAGTGTTCCTGCAAGCTGGACCTCAAGAAGTTGTTATAGTAGGGATCTGCGGACCAGGCCAAATGGGAAAGACAGCTTTGGCCAGAGTTATGTATGACCAAATTCTACATAATTTTGATGGTGGCTGCTTCCTCGCAGAAGTTGCCAAAAGATCAGATCAACCCAATTATCTGGTTCGTCTACAAGAAACACTTCTTTCTGAAATTCTCTTGGAGAGGAATGTCAAGATCTCAAATACTAGAATGGGAAGAGATCTGATTGCGCAAAATTTATGCTCCAAAAGGGTTTTAGTTGTTCTGGACAACGTGGATAATTTGAAGCAAATACATGCACTGGTTGGTGATCGCAAATTTTTTGGTCCAGGAAGTAAAATCATCATAACGGCTAGAGATGTGCACCTGCACCTGCTAGAACTGTTTGGAGTGGATCAGTTCATTTTGGCTCAAGGCCGTCCTCTACCAGAAAATGTTGCGGGTATCTGGGAGCCGTATCAGCGAAGTCGTTGCGTAGTTGCAGGGCTTAAGGAGTACATTGAGACCTTTAATCATCAGAGACTAGACAAACTGAGGAACCTTCAAGCTGTTTTGCTCCAAGAGAGACAGAAAAACGCAACTCAGGGAAGATTAATTTCAGATTTGCTGAAACCCTGTGGTGAGGGCAGTGCCTCAAATGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

418

Amino Acids

47.5

Weight (kDa)

8.0

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 7 - 171 1.1e-37 TIR domain
TIR_2 PF13676 9 - 104 7.5e-13 TIR domain
NB-ARC PF00931 195 - 324 4.6e-10 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49490 FvH4_6g49490 FvH4_6g49490 FvH4_6g49490 FvH4_6g49490 FvH4_6g49490
rosa_laevigata RLG00000021861
rosa_multiflora Rmu_sc0000648.1_g000013
rosa_roxburghii Rroxscaffold_2G00082150
rosa_rugosa Rorug02G0539800
rosa_wichuraiana Rw2G050710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AarI CACCTGC 2 cut(s) 981, 987
Acc16I TGCGCA 1 cut(s) 837
Acc36I ACCTGC 2 cut(s) 981, 987
AccI GTMKAC 1 cut(s) 754
AciI CCGC 3 cut(s) 435, 624, 1046
AclWI GGATC 6 cut(s) 38, 51, 254, 299, 626, 1008
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 5 cut(s) 180, 675, 777, 841, 923
AcuI CTGAAG 1 cut(s) 22
AfaI GTAC 1 cut(s) 1103
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 892, 1151
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 2 cut(s) 628, 934
AluBI AGCT 4 cut(s) 36, 590, 650, 1154
AluI AGCT 4 cut(s) 36, 590, 650, 1154
Alw21I GWGCWC 1 cut(s) 972
Alw26I GTCTC 4 cut(s) 372, 1103, 1120, 1165
Alw44I GTGCAC 1 cut(s) 968
AlwI GGATC 6 cut(s) 38, 51, 254, 299, 626, 1008
AoxI GGCC 3 cut(s) 631, 654, 1021
ApaLI GTGCAC 1 cut(s) 968
ApeKI GCWGC 2 cut(s) 154, 699
ApoI RAATTY 5 cut(s) 180, 675, 777, 841, 923
AseI ATTAAT 1 cut(s) 1199
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 3 cut(s) 593, 626, 932
AsuHPI GGTGA 4 cut(s) 125, 353, 926, 1238
AvaII GGWCC 3 cut(s) 593, 626, 932
BaeGI GKGCMC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 656
BamHI GGATCC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 2 cut(s) 141, 686
BccI CCATC 4 cut(s) 131, 316, 542, 686
BceAI ACGGC 3 cut(s) 972, 1008, 1045
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 1059, 1093
BciT130I CCWGG 2 cut(s) 630, 936
BcoDI GTCTC 4 cut(s) 372, 1103, 1120, 1165
BfaI CTAG 6 cut(s) 177, 350, 813, 960, 983, 1130
BfrI CTTAAG 1 cut(s) 1094
BfuAI ACCTGC 2 cut(s) 981, 987
BglII AGATCT 4 cut(s) 121, 469, 801, 826
BisI GCNGC 3 cut(s) 155, 436, 700
BlsI GCNGC 3 cut(s) 156, 437, 701
Bme1390I CCNGG 2 cut(s) 630, 936
Bme18I GGWCC 3 cut(s) 593, 626, 932
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 3 cut(s) 593, 626, 932
BmiI GGNNCC 3 cut(s) 45, 1059, 1145
BmrFI CCNGG 2 cut(s) 630, 936
BmsI GCATC 4 cut(s) 66, 67, 75, 367
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpuEI CTTGAG 3 cut(s) 402, 582, 1002
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 2 cut(s) 372, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 243, 287, 912
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 2 cut(s) 630, 936
BseGI GGATG 3 cut(s) 8, 308, 466
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 3 cut(s) 559, 1130, 1202
BseNI ACTGG 3 cut(s) 243, 287, 912
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 2 cut(s) 141, 686
BseYI CCCAGC 1 cut(s) 438
BsgI GTGCAG 1 cut(s) 959
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 3 cut(s) 633, 656, 1023
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 972
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 4 cut(s) 372, 1103, 1120, 1165
BsnI GGCC 3 cut(s) 633, 656, 1023
Bso31I GGTCTC 2 cut(s) 372, 1103
Bsp1286I GDGCHC 1 cut(s) 972
BspACI CCGC 3 cut(s) 435, 624, 1046
BspANI GGCC 3 cut(s) 633, 656, 1023
BspCNI CTCAG 3 cut(s) 558, 1131, 1201
BspLI GGNNCC 3 cut(s) 45, 1059, 1145
BspMI ACCTGC 2 cut(s) 981, 987
BspPI GGATC 6 cut(s) 38, 51, 254, 299, 626, 1008
BspTI CTTAAG 1 cut(s) 1094
BspTNI GGTCTC 2 cut(s) 372, 1103
BsrI ACTGG 3 cut(s) 243, 287, 912
Bst2UI CCWGG 2 cut(s) 630, 936
Bst4CI ACNGT 1 cut(s) 990
Bst6I CTCTTC 1 cut(s) 817
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 3 cut(s) 545, 1139, 1188
BstF5I GGATG 3 cut(s) 8, 308, 466
BstHHI GCGC 1 cut(s) 838
BstMAI GTCTC 4 cut(s) 372, 1103, 1120, 1165
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 630, 716, 1066
BstNI CCWGG 2 cut(s) 630, 936
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 628, 934
BstSLI GKGCMC 1 cut(s) 972
BstV1I GCAGC 2 cut(s) 141, 686
BstX2I RGATCY 6 cut(s) 43, 121, 469, 618, 801, 826
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 6 cut(s) 43, 121, 469, 618, 801, 826
BsuRI GGCC 3 cut(s) 633, 656, 1023
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 3 cut(s) 8, 308, 466
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 2 cut(s) 905, 1240
BveI ACCTGC 2 cut(s) 981, 987
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 3 cut(s) 593, 626, 932
Csp6I GTAC 1 cut(s) 1102
CspCI CAANNNNNGTGG 2 cut(s) 224, 259
CviAII CATG 4 cut(s) 222, 250, 391, 902
CviQI GTAC 1 cut(s) 1102
DdeI CTNAG 3 cut(s) 545, 1139, 1188
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 817
EarI CTCTTC 1 cut(s) 817
Eco31I GGTCTC 2 cut(s) 372, 1103
Eco47I GGWCC 3 cut(s) 593, 626, 932
Eco57I CTGAAG 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 628, 934
FaeI CATG 4 cut(s) 225, 253, 394, 905
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 4 cut(s) 221, 249, 390, 901
FauI CCCGC 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 155, 436, 700
FokI GGATG 2 cut(s) 295, 473
Fsp4HI GCNGC 3 cut(s) 155, 436, 700
FspBI CTAG 6 cut(s) 177, 350, 813, 960, 983, 1130
FspI TGCGCA 1 cut(s) 837
GlaI GCGC 1 cut(s) 837
GluI GCNGC 3 cut(s) 155, 436, 700
GsaI CCCAGC 1 cut(s) 442
HaeIII GGCC 3 cut(s) 633, 656, 1023
HhaI GCGC 1 cut(s) 838
Hin1II CATG 4 cut(s) 225, 253, 394, 905
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HphI GGTGA 4 cut(s) 125, 353, 926, 1238
Hpy166II GTNNAC 2 cut(s) 755, 970
Hpy188III TCNNGA 6 cut(s) 47, 177, 572, 599, 799, 872
Hpy8I GTNNAC 2 cut(s) 755, 970
Hpy99I CGWCG 2 cut(s) 366, 520
HpyAV CCTTC 2 cut(s) 258, 1157
HpyCH4III ACNGT 1 cut(s) 990
HpyCH4IV ACGT 2 cut(s) 24, 879
HpyCH4V TGCA 6 cut(s) 446, 586, 905, 970, 976, 1088
HpyF10VI GCNNNNNNNGC 3 cut(s) 630, 716, 1066
HpyF3I CTNAG 3 cut(s) 545, 1139, 1188
HpySE526I ACGT 2 cut(s) 24, 879
Hsp92II CATG 4 cut(s) 225, 253, 394, 905
HspAI GCGC 1 cut(s) 836
LmnI GCTCC 3 cut(s) 854, 1057, 1167
Lsp1109I GCAGC 2 cut(s) 141, 686
LweI GCATC 4 cut(s) 66, 67, 75, 367
MaeI CTAG 6 cut(s) 177, 350, 813, 960, 983, 1130
MaeII ACGT 2 cut(s) 24, 879
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 4 cut(s) 207, 281, 834, 1206
MflI RGATCY 6 cut(s) 43, 121, 469, 618, 801, 826
MhlI GDGCHC 1 cut(s) 972
MlsI TGGCCA 1 cut(s) 656
MluNI TGGCCA 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 353, 539
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 765
MscI TGGCCA 1 cut(s) 656
MseI TTAA 6 cut(s) 98, 128, 159, 1095, 1116, 1199
Msp20I TGGCCA 1 cut(s) 656
MspCI CTTAAG 1 cut(s) 1094
MspR9I CCNGG 2 cut(s) 630, 936
MvaI CCWGG 2 cut(s) 630, 936
MwoI GCNNNNNNNGC 3 cut(s) 630, 716, 1066
NlaIII CATG 4 cut(s) 225, 253, 394, 905
NlaIV GGNNCC 3 cut(s) 45, 1059, 1145
NmuCI GTSAC 1 cut(s) 113
NsbI TGCGCA 1 cut(s) 837
NspI RCATGY 1 cut(s) 905
PaqCI CACCTGC 2 cut(s) 981, 987
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 934
PkrI GCNGC 3 cut(s) 156, 437, 701
PshBI ATTAAT 1 cut(s) 1199
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 628, 934
PspFI CCCAGC 1 cut(s) 438
PspGI CCWGG 2 cut(s) 628, 934
PspN4I GGNNCC 3 cut(s) 45, 1059, 1145
PspPI GGNCC 3 cut(s) 593, 626, 932
PsuI RGATCY 6 cut(s) 43, 121, 469, 618, 801, 826
RsaI GTAC 1 cut(s) 1103
RsaNI GTAC 1 cut(s) 1102
SaqAI TTAA 6 cut(s) 98, 128, 159, 1095, 1116, 1199
SatI GCNGC 3 cut(s) 155, 436, 700
Sau96I GGNCC 3 cut(s) 593, 626, 932
ScrFI CCNGG 2 cut(s) 630, 936
SduI GDGCHC 1 cut(s) 972
SfaNI GCATC 4 cut(s) 66, 67, 75, 367
SinI GGWCC 3 cut(s) 593, 626, 932
SmlI CTYRAG 4 cut(s) 417, 597, 1017, 1094
SmoI CTYRAG 4 cut(s) 417, 597, 1017, 1094
SsiI CCGC 3 cut(s) 435, 624, 1046
SspMI CTAG 6 cut(s) 177, 350, 813, 960, 983, 1130
StyD4I CCNGG 2 cut(s) 628, 934
TaaI ACNGT 1 cut(s) 990
TaiI ACGT 2 cut(s) 27, 882
TaqI TCGA 3 cut(s) 66, 303, 573
TaqII GACCGA 1 cut(s) 359
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 1 cut(s) 438
Tru1I TTAA 6 cut(s) 98, 128, 159, 1095, 1116, 1199
Tru9I TTAA 6 cut(s) 98, 128, 159, 1095, 1116, 1199
TscAI CASTG 2 cut(s) 912, 1240
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 154, 699
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 579, 997
TspRI CASTG 2 cut(s) 912, 1240
Vha464I CTTAAG 1 cut(s) 1094
VneI GTGCAC 1 cut(s) 968
VpaK11BI GGWCC 3 cut(s) 593, 626, 932
VspI ATTAAT 1 cut(s) 1199
XapI RAATTY 5 cut(s) 180, 675, 777, 841, 923
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 905
XmiI GTMKAC 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 6 cut(s) 177, 350, 813, 960, 983, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.