Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Forward (+)

37545080 .. 37547221

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCTTGGGTTCAGCAACAAATCAAGCTTAATGATGGTTATATGAGCTACCCACCACCATATACTGGTACCTTTTACAGAGAATCCAGTCCCTCACTACCATCACCACCTTCATCCTCATCATCTGGTACAAAGATCAGTCCTGCTGTGCTTTTTATCATTGTGATTTTGGCTGTGTTGTTCTTCATCTCTGGTTTGCTTCACCTGCTTGTTAGATTTCTTATAAAGCACCCATCTTCAGCTGCTTCTCAGACTAATAATAGGTACCCAGAAATTTCCACTGCTGATGTTCTTCAGAGGCAGCTTCAGCAGCTCTTCCATCTTCATGATTCGGGTCTGGATCAGGCTTTTATAGATGCTCTTCCTGTTTTCCAGTATAGGGAGATAGTGGGTTTGAAAGAGCCGTTTGATTGTGCTGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTCAGATTGCTTCCTATGTGCAGCCATGCTTTCCATATCAACTGTATAGATACTTGGCTACTGTCGAATTCGACATGTCCTCTTTGTAGGGGTACCCTCTTCACTCCCGGGTATTCGGTTGAGAACCCAATGTTTGATTTTGAAGACTACAGAGAAGAAGATGGGTATCCCTGTAATGGAGAGAATGGGTTCACTTCTAGTCAAAAGACGGTGGACCTTGAGGAAGTTGTTGTTGACAATGGTGTTTTGCCTGTGAGACTCGGCAAGTTTAGAAAGGTAGATGCTGAGGTAGGGGAGACCGCAGGAGGAGAGACTAGTAGCAGTACATTGGATGCAAGAAGATGCTATTCAATGGGATCGTATCAGTATGTGCTTGATAATTCAGAACTCCGGGTTGCCTTATCAAAGGATCAACAGGGCCGCAATATAAAGCTAACAAAAGAGGAACACAGTGGTAATCCGTCAATTGATAGTGATGTAGAGGCGAAGAAGATTGGTAGTGTGACTAGAGGTGAAAGCTACTCTGTTTCCAAGATCTGGCTATGGTCTAAGAAGGGCAAGTATTCGAGCTCAATAGATACACAGACGGGTATGCCTTCATCACTTAATACAGACTTGCCATGGATGAGAAGAACAGAAGAAGCGAGAGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

369

Amino Acids

41.18

Weight (kDa)

5.38

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	135 - 180	2.5e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	137 - 180	1.1e-13	Ring finger domain
zf-RING_11	PF17123	137 - 166	6.3e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AarI	CACCTGC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	213
Acc65I	GGTACC	3 cut(s)	68, 264, 542
AccB1I	GGYRCC	3 cut(s)	68, 264, 542
AccB7I	CCANNNNNTGG	2 cut(s)	65, 987
AciI	CCGC	2 cut(s)	750, 871
AclWI	GGATC	3 cut(s)	348, 814, 867
AcsI	RAATTY	2 cut(s)	273, 517
AcuI	CTGAAG	3 cut(s)	222, 278, 290
AfaI	GTAC	5 cut(s)	70, 130, 266, 544, 775
AfiI	CCNNNNNNNGG	4 cut(s)	65, 379, 626, 987
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	397, 593, 801
AhlI	ACTAGT	1 cut(s)	764
AluBI	AGCT	9 cut(s)	28, 48, 242, 304, 313, 451, 883, 969, 1020
AluI	AGCT	9 cut(s)	28, 48, 242, 304, 313, 451, 883, 969, 1020
Alw21I	GWGCWC	1 cut(s)	1022
Alw26I	GTCTC	3 cut(s)	700, 740, 755
AlwI	GGATC	3 cut(s)	348, 814, 867
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	868
ApeKI	GCWGC	4 cut(s)	242, 301, 310, 471
ApoI	RAATTY	2 cut(s)	273, 517
Asp700I	GAANNNNTTC	1 cut(s)	638
Asp718I	GGTACC	3 cut(s)	68, 264, 542
AspS9I	GGNCC	2 cut(s)	664, 868
AsuC2I	CCSGG	3 cut(s)	558, 559, 842
AsuHPI	GGTGA	3 cut(s)	96, 194, 974
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	664
BanI	GGYRCC	3 cut(s)	68, 264, 542
BanII	GRGCYC	1 cut(s)	1022
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	1022
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	229, 313, 322, 483
BccI	CCATC	5 cut(s)	29, 109, 241, 327, 605
BceAI	ACGGC	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	627
BcnI	CCSGG	3 cut(s)	558, 559, 842
BcoDI	GTCTC	3 cut(s)	700, 740, 755
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	3 cut(s)	648, 765, 957
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	627
BglII	AGATCT	1 cut(s)	984
BisI	GCNGC	5 cut(s)	243, 302, 311, 472, 871
BlsI	GCNGC	5 cut(s)	244, 303, 312, 473, 872
Bme1390I	CCNGG	3 cut(s)	558, 559, 842
Bme18I	GGWCC	1 cut(s)	664
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	664, 868
BmiI	GGNNCC	3 cut(s)	70, 266, 544
BmrFI	CCNGG	3 cut(s)	558, 559, 842
BmsI	GCATC	4 cut(s)	346, 721, 772, 782
BpiI	GAAGAC	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	3 cut(s)	558, 559, 842
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	2 cut(s)	557, 1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 379, 626, 987
Bse1I	ACTGG	3 cut(s)	70, 87, 373
Bse8I	GATNNNNATC	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	557, 1070
BseGI	GGATG	3 cut(s)	113, 787, 1080
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	4 cut(s)	65, 379, 626, 987
BseMII	CTCAG	4 cut(s)	263, 429, 466, 726
BseNI	ACTGG	3 cut(s)	70, 87, 373
BseRI	GAGGAG	1 cut(s)	771
BseXI	GCAGC	4 cut(s)	229, 313, 322, 483
BsgI	GTGCAG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	870
BshNI	GGYRCC	3 cut(s)	68, 264, 542
BsiHKAI	GWGCWC	1 cut(s)	1022
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	558, 841
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	4 cut(s)	65, 379, 626, 987
BsmAI	GTCTC	3 cut(s)	700, 740, 755
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	870
Bso31I	GGTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	1022
Bsp143I	GATC	5 cut(s)	135, 340, 806, 859, 984
Bsp19I	CCATGG	1 cut(s)	1070
BspACI	CCGC	2 cut(s)	750, 871
BspANI	GGCC	1 cut(s)	870
BspCNI	CTCAG	4 cut(s)	262, 430, 465, 727
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	70, 266, 544
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	348, 814, 867
BspQI	GCTCTTC	2 cut(s)	320, 366
BspT107I	GGYRCC	3 cut(s)	68, 264, 542
BspTNI	GGTCTC	1 cut(s)	740
BsrI	ACTGG	3 cut(s)	70, 87, 373
BssECI	CCNNGG	2 cut(s)	557, 1070
BssMI	GATC	5 cut(s)	135, 340, 806, 859, 984
BssT1I	CCWWGG	1 cut(s)	1070
Bst4CI	ACNGT	4 cut(s)	494, 513, 661, 902
Bst6I	CTCTTC	3 cut(s)	320, 366, 554
BstDEI	CTNAG	5 cut(s)	249, 438, 452, 735, 999
BstDSI	CCRYGG	1 cut(s)	1070
BstF5I	GGATG	3 cut(s)	113, 787, 1080
BstKTI	GATC	5 cut(s)	138, 343, 809, 862, 987
BstMAI	GTCTC	3 cut(s)	700, 740, 755
BstMBI	GATC	5 cut(s)	135, 340, 806, 859, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 307, 310, 457
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	556, 557, 840
BstSFI	CTRYAG	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	229, 313, 322, 483
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	870
BtgI	CCRYGG	1 cut(s)	1070
BtsCI	GGATG	3 cut(s)	113, 787, 1080
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 907
BveI	ACCTGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	664, 868
Cfr9I	CCCGGG	1 cut(s)	557
Csp6I	GTAC	5 cut(s)	69, 129, 265, 543, 774
CviAII	CATG	4 cut(s)	326, 476, 525, 1071
CviQI	GTAC	5 cut(s)	69, 129, 265, 543, 774
DdeI	CTNAG	5 cut(s)	249, 438, 452, 735, 999
DpnI	GATC	5 cut(s)	137, 342, 808, 861, 986
DpnII	GATC	5 cut(s)	135, 340, 806, 859, 984
Eam1104I	CTCTTC	3 cut(s)	320, 366, 554
EarI	CTCTTC	3 cut(s)	320, 366, 554
Ecl136II	GAGCTC	1 cut(s)	1020
Eco130I	CCWWGG	1 cut(s)	1070
Eco24I	GRGCYC	1 cut(s)	1022
Eco31I	GGTCTC	1 cut(s)	740
Eco47I	GGWCC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	1020
Eco57I	CTGAAG	3 cut(s)	222, 278, 290
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	1020
EcoRI	GAATTC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	1070
EcoT38I	GRGCYC	1 cut(s)	1022
ErhI	CCWWGG	1 cut(s)	1070
FaeI	CATG	4 cut(s)	329, 479, 528, 1074
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	325, 475, 524, 1070
Fnu4HI	GCNGC	5 cut(s)	243, 302, 311, 472, 871
FokI	GGATG	3 cut(s)	100, 794, 1087
FriOI	GRGCYC	1 cut(s)	1022
Fsp4HI	GCNGC	5 cut(s)	243, 302, 311, 472, 871
FspBI	CTAG	3 cut(s)	648, 765, 957
GluI	GCNGC	5 cut(s)	243, 302, 311, 472, 871
HaeIII	GGCC	1 cut(s)	870
HapII	CCGG	2 cut(s)	558, 841
Hin1II	CATG	4 cut(s)	329, 479, 528, 1074
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	83, 329, 708
HpaII	CCGG	2 cut(s)	558, 841
HphI	GGTGA	3 cut(s)	96, 194, 974
Hpy166II	GTNNAC	4 cut(s)	435, 642, 664, 685
Hpy188I	TCNGA	4 cut(s)	252, 297, 455, 835
Hpy188III	TCNNGA	2 cut(s)	326, 338
Hpy8I	GTNNAC	4 cut(s)	435, 642, 664, 685
HpyAV	CCTTC	4 cut(s)	120, 436, 997, 1056
HpyCH4III	ACNGT	4 cut(s)	494, 513, 661, 902
HpyCH4V	TGCA	2 cut(s)	471, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 307, 310, 457
HpyF3I	CTNAG	5 cut(s)	249, 438, 452, 735, 999
Hsp92II	CATG	4 cut(s)	329, 479, 528, 1074
KpnI	GGTACC	3 cut(s)	72, 268, 546
Kzo9I	GATC	5 cut(s)	135, 340, 806, 859, 984
LguI	GCTCTTC	2 cut(s)	320, 366
Lsp1109I	GCAGC	4 cut(s)	229, 313, 322, 483
LweI	GCATC	4 cut(s)	346, 721, 772, 782
MaeI	CTAG	3 cut(s)	648, 765, 957
MaeIII	GTNAC	1 cut(s)	952
MalI	GATC	5 cut(s)	137, 342, 808, 861, 986
MboI	GATC	5 cut(s)	135, 340, 806, 859, 984
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	1 cut(s)	1022
MluCI	AATT	4 cut(s)	273, 517, 829, 915
MlyI	GAGTC	1 cut(s)	702
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	2 cut(s)	30, 1056
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	558, 841
MspR9I	CCNGG	3 cut(s)	558, 559, 842
MunI	CAATTG	1 cut(s)	915
MwoI	GCNNNNNNNGC	4 cut(s)	205, 307, 310, 457
NciI	CCSGG	3 cut(s)	558, 559, 842
NcoI	CCATGG	1 cut(s)	1070
NdeII	GATC	5 cut(s)	135, 340, 806, 859, 984
NlaIII	CATG	4 cut(s)	329, 479, 528, 1074
NlaIV	GGNNCC	3 cut(s)	70, 266, 544
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	1 cut(s)	528
PagI	TCATGA	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	213
PciI	ACATGT	1 cut(s)	524
PciSI	GCTCTTC	2 cut(s)	320, 366
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	83, 329
PflMI	CCANNNNNTGG	2 cut(s)	65, 987
PkrI	GCNGC	5 cut(s)	244, 303, 312, 473, 872
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PscI	ACATGT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	1022
PspN4I	GGNNCC	3 cut(s)	70, 266, 544
PspPI	GGNCC	2 cut(s)	664, 868
PsuI	RGATCY	1 cut(s)	984
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	5 cut(s)	70, 130, 266, 544, 775
RsaNI	GTAC	5 cut(s)	69, 129, 265, 543, 774
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	1022
SapI	GCTCTTC	2 cut(s)	320, 366
SaqAI	TTAA	2 cut(s)	30, 1056
SatI	GCNGC	5 cut(s)	243, 302, 311, 472, 871
Sau3AI	GATC	5 cut(s)	135, 340, 806, 859, 984
Sau96I	GGNCC	2 cut(s)	664, 868
SchI	GAGTC	1 cut(s)	702
ScrFI	CCNGG	3 cut(s)	558, 559, 842
SduI	GDGCHC	1 cut(s)	1022
SfaNI	GCATC	4 cut(s)	346, 721, 772, 782
SfcI	CTRYAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	664
SmaI	CCCGGG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	4 cut(s)	273, 517, 829, 915
SsiI	CCGC	2 cut(s)	750, 871
SspMI	CTAG	3 cut(s)	648, 765, 957
SstI	GAGCTC	1 cut(s)	1022
StyD4I	CCNGG	3 cut(s)	556, 557, 840
StyI	CCWWGG	1 cut(s)	1070
TaaI	ACNGT	4 cut(s)	494, 513, 661, 902
TaqI	TCGA	3 cut(s)	515, 521, 1016
TasI	AATT	4 cut(s)	273, 517, 829, 915
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	2 cut(s)	83, 329
Tru1I	TTAA	2 cut(s)	30, 1056
Tru9I	TTAA	2 cut(s)	30, 1056
TscAI	CASTG	2 cut(s)	286, 907
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	4 cut(s)	242, 301, 310, 471
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	4 cut(s)	102, 175, 314, 1038
TspGWI	ACGGA	1 cut(s)	900
TspMI	CCCGGG	1 cut(s)	557
TspRI	CASTG	2 cut(s)	286, 907
Van91I	CCANNNNNTGG	2 cut(s)	65, 987
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	2 cut(s)	273, 517
XceI	RCATGY	1 cut(s)	528
XmaI	CCCGGG	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	648, 765, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.