Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Forward (+)

25666126 .. 25669794

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G281500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATCTGTCGAATGTCAGAAGGAAAAGATCTTAGATGGTTTTCAGGCCACACCCATTTGAAGATGTCTTGGGTTCAGCATCAAATGCAGCTGAAAGATGGTTATTTGAGCCGCCCTCCTCCTTTCTCTCTTCCCTCTTCGCCCCAATATGTTGCTACTTTTCATAGAGATTCGAATCCACCAGCATCATCTGGTACAAAAATAAGTCCTGCTGTTCTTTTTATAATAGTAATTCTGGCTGTACTGTTCTTCATCTCTGGTTTGCTGCACCTGCTCGTTAGATTTCTTACAAAGCACCCATCTTCCTCAGCTTCTTCTCCTCAGTCTAATAGGTACCCAGAACTTTCTACTTCTGATGCTCTTCAGAGACAGCTGCAGCAACTCTTTCACCTTCATGATTCTGGTCTAGATCAAGCTTTTATTGATGCTCTTCCTGTTTTCCAATATAGAGACATAGTGGGTTTGAAAGAGCCGTTTGATTGTTCTGTTTGTCTTTGTGAATTTTCTGAAAAGGACAAGCTCAGATTGCTTCCTACGTGTAGCCATGCTTTCCATATCAACTGTATAGATACTTGGCTACTGTCAAATTCAACATGTCCTCTTTGTAGGGGTACCCTCTTCAATCCCGATTATTCGGTTCAAAACCCAATTTTTGATTTTGATGAGTATAGAGAAGAAGAAGGGTATCCTGGTAATGGAGAAAACGGGTTCACTACTAGGCAAAAGACCATGGACATTGAGGAAATTGTTGTTGAAAATGGGATTTTGCCTGTGAGACTTGGCAAATTTAGAAAGGTAGATGTTGAGGTAGGAGGGGAGACTGGAGTAGGAGAGACTAGTAGCAGTAATTTGGATGCAAGAAGATGTTTTTCGATGGGTTCATATCAGTATGTGCTTGGTGATTCAGACCTTCAGGTTCCCTTATCGAATGATCAACAAGACCGCAATATAAAGCTAACAAGAGGGATAGAACGCGATGGTAATCCTTCAATTGATAGTGATGTGGAGGGAAAGAAGATCAGTAGTGTGACTAAGGGTGAAAGCTATTCTGTTTCCAAGATCTGGCTCTGGTCAAAGAAGGGCAAGTTTTCGAGTTCTATTGATACACAGATGGGTATGCCTTCCTCTCTTAATACAGACTTGCCATGGATGGGAAGAATGCGAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

391

Amino Acids

43.84

Weight (kDa)

5.96

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AarI	CACCTGC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	279
Acc65I	GGTACC	2 cut(s)	333, 611
AccB1I	GGYRCC	2 cut(s)	333, 611
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AccII	CGCG	1 cut(s)	975
AciI	CCGC	2 cut(s)	112, 943
AcsI	RAATTY	3 cut(s)	500, 586, 785
AcuI	CTGAAG	2 cut(s)	347, 896
AfaI	GTAC	4 cut(s)	196, 243, 335, 613
AfiI	CCNNNNNNNGG	3 cut(s)	695, 1062, 1151
AflIII	ACRYGT	2 cut(s)	536, 593
AgsI	TTSAA	7 cut(s)	61, 466, 591, 622, 641, 755, 990
AhlI	ACTAGT	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	7 cut(s)	91, 311, 373, 416, 520, 955, 1044
AluI	AGCT	7 cut(s)	91, 311, 373, 416, 520, 955, 1044
Alw26I	GTCTC	5 cut(s)	361, 444, 769, 812, 827
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	4 cut(s)	88, 265, 373, 376
ApoI	RAATTY	3 cut(s)	500, 586, 785
Asp718I	GGTACC	2 cut(s)	333, 611
AsuHPI	GGTGA	3 cut(s)	380, 911, 1049
AsuII	TTCGAA	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	333, 611
BbvCI	CCTCAGC	1 cut(s)	307
BbvI	GCAGC	4 cut(s)	100, 252, 360, 388
BccI	CCATC	7 cut(s)	30, 92, 307, 868, 971, 1105, 1144
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	696
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	5 cut(s)	361, 444, 769, 812, 827
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	3 cut(s)	407, 717, 837
BfmI	CTRYAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	696
BglII	AGATCT	2 cut(s)	28, 1059
BisI	GCNGC	5 cut(s)	89, 112, 266, 374, 377
BlsI	GCNGC	5 cut(s)	90, 113, 267, 375, 378
Bme1390I	CCNGG	1 cut(s)	690
BmiI	GGNNCC	3 cut(s)	335, 613, 918
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	5 cut(s)	88, 194, 346, 415, 844
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	537
BsaBI	GATNNNNATC	2 cut(s)	174, 981
BsaJI	CCNNGG	2 cut(s)	729, 1145
Bsc4I	CCNNNNNNNGG	3 cut(s)	695, 1062, 1151
Bse1I	ACTGG	1 cut(s)	826
Bse8I	GATNNNNATC	2 cut(s)	174, 981
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	729, 1145
BseGI	GGATG	2 cut(s)	859, 1155
BseJI	GATNNNNATC	2 cut(s)	174, 981
BseLI	CCNNNNNNNGG	3 cut(s)	695, 1062, 1151
BseMII	CTCAG	3 cut(s)	321, 335, 535
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	2 cut(s)	108, 309
BseXI	GCAGC	4 cut(s)	100, 252, 360, 388
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	975
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	2 cut(s)	333, 611
BslI	CCNNNNNNNGG	3 cut(s)	695, 1062, 1151
BsmAI	GTCTC	5 cut(s)	361, 444, 769, 812, 827
BsmI	GAATGC	1 cut(s)	1164
BsnI	GGCC	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
Bsp19I	CCATGG	2 cut(s)	729, 1145
BspACI	CCGC	2 cut(s)	112, 943
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	320, 334, 534
BspFNI	CGCG	1 cut(s)	975
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	335, 613, 918
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	279
BspQI	GCTCTTC	2 cut(s)	366, 435
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	2 cut(s)	333, 611
BsrI	ACTGG	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	729, 1145
BssMI	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
BssT1I	CCWWGG	2 cut(s)	729, 1145
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	246, 563, 582
Bst6I	CTCTTC	5 cut(s)	135, 142, 366, 435, 623
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	1164
BstDEI	CTNAG	5 cut(s)	32, 307, 321, 521, 1032
BstDSI	CCRYGG	2 cut(s)	729, 1145
BstF5I	GGATG	2 cut(s)	859, 1155
BstFNI	CGCG	1 cut(s)	975
BstKTI	GATC	6 cut(s)	6, 31, 412, 934, 1020, 1062
BstMAI	GTCTC	5 cut(s)	361, 444, 769, 812, 827
BstMBI	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 271, 526
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	975
BstV1I	GCAGC	4 cut(s)	100, 252, 360, 388
BstX2I	RGATCY	2 cut(s)	28, 1059
BstYI	RGATCY	2 cut(s)	28, 1059
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	2 cut(s)	729, 1145
BtgZI	GCGATG	1 cut(s)	990
BtsCI	GGATG	2 cut(s)	859, 1155
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	1164
CciI	TCATGA	1 cut(s)	394
Csp6I	GTAC	4 cut(s)	195, 242, 334, 612
CviAII	CATG	5 cut(s)	395, 545, 594, 730, 1146
CviQI	GTAC	4 cut(s)	195, 242, 334, 612
DdeI	CTNAG	5 cut(s)	32, 307, 321, 521, 1032
DpnI	GATC	6 cut(s)	5, 30, 411, 933, 1019, 1061
DpnII	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
Eam1104I	CTCTTC	5 cut(s)	135, 142, 366, 435, 623
EarI	CTCTTC	5 cut(s)	135, 142, 366, 435, 623
Eco130I	CCWWGG	2 cut(s)	729, 1145
Eco57I	CTGAAG	2 cut(s)	347, 896
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	729, 1145
ErhI	CCWWGG	2 cut(s)	729, 1145
FaeI	CATG	5 cut(s)	398, 548, 597, 733, 1149
FatI	CATG	5 cut(s)	394, 544, 593, 729, 1145
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	5 cut(s)	89, 112, 266, 374, 377
FokI	GGATG	2 cut(s)	866, 1162
Fsp4HI	GCNGC	5 cut(s)	89, 112, 266, 374, 377
FspBI	CTAG	3 cut(s)	407, 717, 837
GluI	GCNGC	5 cut(s)	89, 112, 266, 374, 377
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	398, 548, 597, 733, 1149
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	4 cut(s)	170, 175, 398, 902
HphI	GGTGA	3 cut(s)	380, 911, 1049
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	6 cut(s)	19, 355, 366, 508, 524, 907
Hpy188III	TCNNGA	3 cut(s)	395, 407, 626
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	7 cut(s)	14, 401, 674, 920, 996, 1072, 1131
HpyCH4III	ACNGT	3 cut(s)	246, 563, 582
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	4 cut(s)	88, 268, 376, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 271, 526
HpyF3I	CTNAG	5 cut(s)	32, 307, 321, 521, 1032
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	5 cut(s)	398, 548, 597, 733, 1149
KpnI	GGTACC	2 cut(s)	337, 615
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
LguI	GCTCTTC	2 cut(s)	366, 435
Lsp1109I	GCAGC	4 cut(s)	100, 252, 360, 388
LweI	GCATC	5 cut(s)	88, 194, 346, 415, 844
MaeI	CTAG	3 cut(s)	407, 717, 837
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	1027
MalI	GATC	6 cut(s)	5, 30, 411, 933, 1019, 1061
MboI	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	2 cut(s)	28, 1059
MluCI	AATT	8 cut(s)	231, 500, 586, 648, 744, 785, 847, 990
MseI	TTAA	1 cut(s)	1131
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	91, 373
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	1164
MvaI	CCWGG	1 cut(s)	690
MvnI	CGCG	1 cut(s)	975
MwoI	GCNNNNNNNGC	3 cut(s)	85, 271, 526
NcoI	CCATGG	2 cut(s)	729, 1145
NdeII	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
NlaIII	CATG	5 cut(s)	398, 548, 597, 733, 1149
NlaIV	GGNNCC	3 cut(s)	335, 613, 918
NmuCI	GTSAC	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	597
NspV	TTCGAA	1 cut(s)	173
PagI	TCATGA	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	279
PciI	ACATGT	1 cut(s)	593
PciSI	GCTCTTC	2 cut(s)	366, 435
PctI	GAATGC	1 cut(s)	1164
PfeI	GAWTC	4 cut(s)	170, 175, 398, 902
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	5 cut(s)	90, 113, 267, 375, 378
Ppu21I	YACGTR	1 cut(s)	537
PscI	ACATGT	1 cut(s)	593
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	3 cut(s)	335, 613, 918
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	28, 1059
PvuII	CAGCTG	2 cut(s)	91, 373
RsaI	GTAC	4 cut(s)	196, 243, 335, 613
RsaNI	GTAC	4 cut(s)	195, 242, 334, 612
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	2 cut(s)	366, 435
SaqAI	TTAA	1 cut(s)	1131
SatI	GCNGC	5 cut(s)	89, 112, 266, 374, 377
Sau3AI	GATC	6 cut(s)	3, 28, 409, 931, 1017, 1059
ScrFI	CCNGG	1 cut(s)	690
SfaNI	GCATC	5 cut(s)	88, 194, 346, 415, 844
SfcI	CTRYAG	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	393
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	8 cut(s)	231, 500, 586, 648, 744, 785, 847, 990
SsiI	CCGC	2 cut(s)	112, 943
SspMI	CTAG	3 cut(s)	407, 717, 837
StyD4I	CCNGG	1 cut(s)	688
StyI	CCWWGG	2 cut(s)	729, 1145
TaaI	ACNGT	3 cut(s)	246, 563, 582
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	5 cut(s)	10, 173, 872, 926, 1091
TasI	AATT	8 cut(s)	231, 500, 586, 648, 744, 785, 847, 990
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	4 cut(s)	170, 175, 398, 902
Tru1I	TTAA	1 cut(s)	1131
Tru9I	TTAA	1 cut(s)	1131
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	4 cut(s)	88, 265, 373, 376
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	152, 241, 383, 870
Van91I	CCANNNNNTGG	1 cut(s)	1062
XapI	RAATTY	3 cut(s)	500, 586, 785
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	597
XspI	CTAG	3 cut(s)	407, 717, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.