Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Forward (+)

87387192 .. 87390364

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG646900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTTGGGTTCAGCAACAAATCAAGGTTAATGATGGTTATTTGAGCTACCCACCTCCATATGCTGGTCCCTTTTATAGAGAAGCAAATCCCTCAGTAGTACCATCACCACCTGCATCATCATCTGGTACAAAGATCAGTCCTGCTGTGCTTTTCATCATTGTGATTCTGGCTGTACTGTTCTTCATCTCTGGTTTGCTTCACCTGCTTGTTAGATTTCTTATAAAGCACCCATCTTCAGCTTCTTCTCAGACTAATAATAATAATAGGTACCCAGAAATTTCCACTGCTGATGCTCTTCAGAGGCAGCTTCAGCAACTCTTCCACCTTCACGATTCGGGTCTGGATCAGGCTTTTATTGATGCTCTTCCTGTTTTCCAGTATAGGGAGATTGTGGGTTTGAAAGAGCCGTTTGATTGTGCTGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTCAGATTGCTTCCTATGTGTAGCCATGCTTTCCATATCAACTGTATAGATACTTGGCTACTGTCGAATTCGACATGTCCTCTTTGTAGGGGTACCCTCTTCACTCCCGATTATGCGGTTGAGAACCCAATGTTCGATTTTGATGACTACAGAGAAGAAGATGGGTATCCTGGTCGTGGAGAAAATGGGTTCACTTCTAGTCAAAAGACAGTGGACATTGAGGAAGTTGTTGTTGACAATGGGGTTTTGCCTGTGAGACTTGGCAAGTTTAGAAAGGTAGATGCTGAGGTAGGGGACACCGCAGGAGGAGAGACTAGTAGCAGTACATTGGATGCAAGAAGATGCTATTCAATGGGATCATATCAGTATGTGCTTGATAATTCAGAACTCCGGGTTGCCTTATCGAAGGATCAACAGGGCCGCAATATAAAGCTAACAAAAGAGGAACACAATGGTAATCCTTCAATTGATAGTGATGTAGAGGCGAAGAAGATTGGTAGTGTGACTAAAGGTGAAAGCTACTCTGTTTCCAAGATCTGGCTCTGGTCTAAGAAGGGCAAGTATTCAAGCTCAATTGATACACAGACGGGTATGCCTTCATCTCTTAATACAGACTTGCCATGGATGAGAAGAACACAAGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

367

Amino Acids

40.95

Weight (kDa)

5.46

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	137 - 182	2.5e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	139 - 182	1.1e-13	Ring finger domain
zf-RING_11	PF17123	139 - 168	6.3e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AarI	CACCTGC	2 cut(s)	121, 213
Acc36I	ACCTGC	2 cut(s)	121, 213
Acc65I	GGTACC	2 cut(s)	270, 548
AccB1I	GGYRCC	2 cut(s)	270, 548
AccB7I	CCANNNNNTGG	2 cut(s)	65, 993
AciI	CCGC	3 cut(s)	572, 756, 877
AclWI	GGATC	3 cut(s)	354, 820, 873
AcsI	RAATTY	2 cut(s)	279, 523
AcuI	CTGAAG	3 cut(s)	222, 284, 296
AfaI	GTAC	6 cut(s)	102, 130, 177, 272, 550, 781
AfiI	CCNNNNNNNGG	4 cut(s)	65, 385, 632, 993
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	403, 807, 921, 1023
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	7 cut(s)	48, 242, 310, 457, 889, 975, 1026
AluI	AGCT	7 cut(s)	48, 242, 310, 457, 889, 975, 1026
Alw26I	GTCTC	2 cut(s)	706, 761
AlwI	GGATC	3 cut(s)	354, 820, 873
AoxI	GGCC	1 cut(s)	874
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	279, 523
Asp718I	GGTACC	2 cut(s)	270, 548
AspS9I	GGNCC	2 cut(s)	68, 874
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	3 cut(s)	99, 194, 980
AvaII	GGWCC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	270, 548
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	4 cut(s)	29, 112, 241, 611
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	2 cut(s)	706, 761
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	2 cut(s)	654, 771
BfmI	CTRYAG	1 cut(s)	604
BfuAI	ACCTGC	2 cut(s)	121, 213
BfuI	GTATCC	1 cut(s)	633
BglII	AGATCT	1 cut(s)	990
BisI	GCNGC	2 cut(s)	308, 877
BlsI	GCNGC	2 cut(s)	309, 878
Bme1390I	CCNGG	2 cut(s)	627, 848
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	68, 874
BmiI	GGNNCC	3 cut(s)	70, 272, 550
BmrFI	CCNGG	2 cut(s)	627, 848
BmsI	GCATC	6 cut(s)	125, 283, 352, 727, 778, 788
Bpu10I	CCTNAGC	1 cut(s)	741
BpuMI	CCSGG	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	1076
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 385, 632, 993
Bse1I	ACTGG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	1076
BseGI	GGATG	2 cut(s)	793, 1086
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	4 cut(s)	65, 385, 632, 993
BseMII	CTCAG	5 cut(s)	108, 263, 435, 472, 732
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	876
BshNI	GGYRCC	2 cut(s)	270, 548
BsiSI	CCGG	1 cut(s)	847
BslFI	GGGAC	2 cut(s)	54, 764
BslI	CCNNNNNNNGG	4 cut(s)	65, 385, 632, 993
BsmAI	GTCTC	2 cut(s)	706, 761
BsmFI	GGGAC	2 cut(s)	54, 764
BsnI	GGCC	1 cut(s)	876
Bsp143I	GATC	5 cut(s)	135, 346, 812, 865, 990
Bsp19I	CCATGG	1 cut(s)	1076
BspACI	CCGC	3 cut(s)	572, 756, 877
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	5 cut(s)	107, 262, 436, 471, 733
BspLI	GGNNCC	3 cut(s)	70, 272, 550
BspMI	ACCTGC	2 cut(s)	121, 213
BspPI	GGATC	3 cut(s)	354, 820, 873
BspQI	GCTCTTC	2 cut(s)	303, 372
BspT107I	GGYRCC	2 cut(s)	270, 548
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	1076
BssMI	GATC	5 cut(s)	135, 346, 812, 865, 990
BssT1I	CCWWGG	1 cut(s)	1076
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	180, 500, 519, 667
Bst6I	CTCTTC	4 cut(s)	303, 326, 372, 560
BstDEI	CTNAG	6 cut(s)	94, 249, 444, 458, 741, 1005
BstDSI	CCRYGG	1 cut(s)	1076
BstF5I	GGATG	2 cut(s)	793, 1086
BstKTI	GATC	5 cut(s)	138, 349, 815, 868, 993
BstMAI	GTCTC	2 cut(s)	706, 761
BstMBI	GATC	5 cut(s)	135, 346, 812, 865, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 313, 463
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	625, 846
BstSFI	CTRYAG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	990
BstYI	RGATCY	1 cut(s)	990
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	1076
BtsCI	GGATG	2 cut(s)	793, 1086
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 672
BveI	ACCTGC	2 cut(s)	121, 213
Cfr13I	GGNCC	2 cut(s)	68, 874
Csp6I	GTAC	6 cut(s)	101, 129, 176, 271, 549, 780
CviAII	CATG	3 cut(s)	482, 531, 1077
CviQI	GTAC	6 cut(s)	101, 129, 176, 271, 549, 780
DdeI	CTNAG	6 cut(s)	94, 249, 444, 458, 741, 1005
DpnI	GATC	5 cut(s)	137, 348, 814, 867, 992
DpnII	GATC	5 cut(s)	135, 346, 812, 865, 990
Eam1104I	CTCTTC	4 cut(s)	303, 326, 372, 560
EarI	CTCTTC	4 cut(s)	303, 326, 372, 560
Eco130I	CCWWGG	1 cut(s)	1076
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	3 cut(s)	222, 284, 296
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	1076
ErhI	CCWWGG	1 cut(s)	1076
FaeI	CATG	3 cut(s)	485, 534, 1080
FaqI	GGGAC	2 cut(s)	54, 764
FatI	CATG	3 cut(s)	481, 530, 1076
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	308, 877
FokI	GGATG	2 cut(s)	800, 1093
Fsp4HI	GCNGC	2 cut(s)	308, 877
FspBI	CTAG	2 cut(s)	654, 771
GluI	GCNGC	2 cut(s)	308, 877
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	1 cut(s)	847
Hin1II	CATG	3 cut(s)	485, 534, 1080
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	2 cut(s)	166, 335
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	3 cut(s)	99, 194, 980
Hpy166II	GTNNAC	4 cut(s)	441, 648, 670, 691
Hpy188I	TCNGA	4 cut(s)	252, 303, 461, 841
Hpy188III	TCNNGA	3 cut(s)	332, 344, 563
Hpy8I	GTNNAC	4 cut(s)	441, 648, 670, 691
HpyAV	CCTTC	6 cut(s)	338, 442, 856, 927, 1003, 1062
HpyCH4III	ACNGT	4 cut(s)	180, 500, 519, 667
HpyCH4V	TGCA	2 cut(s)	116, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 313, 463
HpyF3I	CTNAG	6 cut(s)	94, 249, 444, 458, 741, 1005
Hsp92II	CATG	3 cut(s)	485, 534, 1080
KpnI	GGTACC	2 cut(s)	274, 552
Kzo9I	GATC	5 cut(s)	135, 346, 812, 865, 990
LguI	GCTCTTC	2 cut(s)	303, 372
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	6 cut(s)	125, 283, 352, 727, 778, 788
MaeI	CTAG	2 cut(s)	654, 771
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	5 cut(s)	137, 348, 814, 867, 992
MboI	GATC	5 cut(s)	135, 346, 812, 865, 990
MfeI	CAATTG	2 cut(s)	921, 1029
MflI	RGATCY	1 cut(s)	990
MluCI	AATT	5 cut(s)	279, 523, 835, 921, 1029
MseI	TTAA	2 cut(s)	30, 1062
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	627, 848
MunI	CAATTG	2 cut(s)	921, 1029
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	3 cut(s)	205, 313, 463
NciI	CCSGG	1 cut(s)	848
NcoI	CCATGG	1 cut(s)	1076
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	5 cut(s)	135, 346, 812, 865, 990
NlaIII	CATG	3 cut(s)	485, 534, 1080
NlaIV	GGNNCC	3 cut(s)	70, 272, 550
NmuCI	GTSAC	1 cut(s)	958
NspI	RCATGY	1 cut(s)	534
PaqCI	CACCTGC	2 cut(s)	121, 213
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	2 cut(s)	303, 372
PfeI	GAWTC	2 cut(s)	166, 335
PflMI	CCANNNNNTGG	2 cut(s)	65, 993
PkrI	GCNGC	2 cut(s)	309, 878
PscI	ACATGT	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	70, 272, 550
PspPI	GGNCC	2 cut(s)	68, 874
PsuI	RGATCY	1 cut(s)	990
RsaI	GTAC	6 cut(s)	102, 130, 177, 272, 550, 781
RsaNI	GTAC	6 cut(s)	101, 129, 176, 271, 549, 780
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	2 cut(s)	303, 372
SaqAI	TTAA	2 cut(s)	30, 1062
SatI	GCNGC	2 cut(s)	308, 877
Sau3AI	GATC	5 cut(s)	135, 346, 812, 865, 990
Sau96I	GGNCC	2 cut(s)	68, 874
ScrFI	CCNGG	2 cut(s)	627, 848
SfaNI	GCATC	6 cut(s)	125, 283, 352, 727, 778, 788
SfcI	CTRYAG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	5 cut(s)	279, 523, 835, 921, 1029
SsiI	CCGC	3 cut(s)	572, 756, 877
SspMI	CTAG	2 cut(s)	654, 771
StyD4I	CCNGG	2 cut(s)	625, 846
StyI	CCWWGG	1 cut(s)	1076
TaaI	ACNGT	4 cut(s)	180, 500, 519, 667
TaqI	TCGA	4 cut(s)	521, 527, 591, 860
TasI	AATT	5 cut(s)	279, 523, 835, 921, 1029
TatI	WGTACW	2 cut(s)	175, 779
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	2 cut(s)	166, 335
Tru1I	TTAA	2 cut(s)	30, 1062
Tru9I	TTAA	2 cut(s)	30, 1062
TscAI	CASTG	2 cut(s)	292, 672
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	3 cut(s)	145, 175, 1044
TspRI	CASTG	2 cut(s)	292, 672
Van91I	CCANNNNNTGG	2 cut(s)	65, 993
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	279, 523
XceI	RCATGY	1 cut(s)	534
XspI	CTAG	2 cut(s)	654, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.