Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Reverse (-)

2234362 .. 2238046

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1036200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGATACCTCGAATGGCAGAGGGGAAAGATCTTAGATGGTTTTCTGGGCACACTCATTTGAAGATGTCTTGGGTTCAGCATCAAATCCAGGTTAAAGATGGTTATTTGAGCTACCCTCCTCCTTTTTCTCTTCAATCTTCACCCCCGTATGCTGGAACTTTTCGTAGTGAATCGAACTCGAATCCATCACCACCGTCATCATCCGGTTCAAGAATTAGTCCTGCTTTGCTTTTTATAATAGTGATTCTGGCTGTGCTGTTTTTCATCTCCGGTTTGCTCCACCTGCTCGTTCGATTCCTTACTAAGCACCCGTCTTCCTCAGCTTCTTCTCAGTCTAATCGGTACCCAGAAATGTCTACTGCTGATGTTCTTCAGAGACAGCTGCAGCAGCTCTTCCACCTTCATGATTCTGGTCTAGATCAAGCATTTATCGACGCTCTTCCTGTTTTCCAGTATCGTGATATTGTGGGTGCGAAAGAGCCGTTCGATTGTTCTGTTTGCCTTTGTGAGTTTACCGAGAAGGACAAGCTCAGATTGCTCCCTACGTGTAACCATGCTTTCCATATCAACTGTATAGATACTTGGCTACTGTCAAATTCAACATGTCCTCTTTGTAGGAGTACCCTTTTTAATCCCGAGTACTCGGTTGAAAACCCAATTTTTGATTTTGATGACTATAGAGAAGAAGAAGGGTATCCTGGTAATGGAGAAAACAGGTTCGCTTCAAGGCAAAAAACCATGGACATTGAGGAAATTGTTGTCGATAAGGGGATCTTGCCTGTGAGACTCGGCAAATTTAGAAAGGTAGATGCTGAGGTAGGGGAGACGGGAGGAGGAGAGGGTAGTAGCAGTAGATTGGATGCAAGAAGATGTTTTTCAATGGGTTCGTATCAGTATGTGCTTAATGATTCAGAACTTCGGGTTCCCTTATCAAATGATCAACAAGGCCGCAATGTAAAGCCAACAAGAGGGATAGAAAACAATGGTAATCTTTCAATTGATAGTGACATGGAGGGAAAGAAGATCAGCAGTGTGACTAAGGGTGAAAGCTATTCTGTTTCCAAGATCTGGCTCTGGTCGAAGAAGGGCAAGTTTTCAAGCTCGACAGATACACAGATGGGCATGCCTTCGTCTCTTAACACAGACTTGCCATGGATGAATAGAACGCAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

393

Amino Acids

44.06

Weight (kDa)

6.17

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	160 - 206	6.7e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	163 - 206	1.2e-13	Ring finger domain
zf-RING_11	PF17123	163 - 192	7.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	164 - 205	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AarI	CACCTGC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	1068
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	1 cut(s)	949
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	595, 794
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	344, 622, 641
AfiI	CCNNNNNNNGG	4 cut(s)	152, 704, 968, 1068
AflIII	ACRYGT	2 cut(s)	545, 602
AgsI	TTSAA	9 cut(s)	61, 134, 210, 600, 650, 726, 879, 996, 1098
AjnI	CCWGG	2 cut(s)	87, 697
AluBI	AGCT	7 cut(s)	111, 323, 382, 391, 529, 1050, 1101
AluI	AGCT	7 cut(s)	111, 323, 382, 391, 529, 1050, 1101
Alw26I	GTCTC	4 cut(s)	370, 778, 818, 1137
AlwI	GGATC	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	946
ApeKI	GCWGC	3 cut(s)	382, 385, 388
ApoI	RAATTY	2 cut(s)	595, 794
Asp718I	GGTACC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	132, 180, 1055
AvaI	CYCGRG	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	306
BbvCI	CCTCAGC	2 cut(s)	319, 813
BbvI	GCAGC	3 cut(s)	369, 397, 400
BccI	CCATC	4 cut(s)	30, 92, 193, 1111
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	2 cut(s)	89, 699
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	4 cut(s)	370, 778, 818, 1137
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	383, 676
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	705
BglII	AGATCT	2 cut(s)	28, 1065
BisI	GCNGC	4 cut(s)	383, 386, 389, 949
BlsI	GCNGC	4 cut(s)	384, 387, 390, 950
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	89, 699
BmeT110I	CYCGRG	1 cut(s)	635
BmiI	GGNNCC	2 cut(s)	344, 924
BmrFI	CCNGG	2 cut(s)	89, 699
BmsI	GCATC	3 cut(s)	88, 799, 850
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu10I	CCTNAGC	2 cut(s)	319, 813
BsaAI	YACGTR	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	738, 1151
BsaWI	WCCGGW	2 cut(s)	203, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 704, 968, 1068
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	89, 699
BseDI	CCNNGG	2 cut(s)	738, 1151
BseGI	GGATG	3 cut(s)	200, 865, 1161
BseLI	CCNNNNNNNGG	4 cut(s)	152, 704, 968, 1068
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	4 cut(s)	333, 344, 544, 804
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	3 cut(s)	108, 846, 849
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	369, 397, 400
BshFI	GGCC	1 cut(s)	948
BshNI	GGYRCC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	2 cut(s)	204, 270
BslI	CCNNNNNNNGG	4 cut(s)	152, 704, 968, 1068
BsmAI	GTCTC	4 cut(s)	370, 778, 818, 1137
BsmBI	CGTCTC	2 cut(s)	818, 1137
BsnI	GGCC	1 cut(s)	948
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
Bsp19I	CCATGG	2 cut(s)	738, 1151
BspACI	CCGC	1 cut(s)	949
BspANI	GGCC	1 cut(s)	948
BspCNI	CTCAG	4 cut(s)	332, 343, 543, 805
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	344, 924
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	779
BspQI	GCTCTTC	2 cut(s)	398, 444
BspT107I	GGYRCC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	738, 1151
BssMI	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
BssT1I	CCWWGG	2 cut(s)	738, 1151
Bst2UI	CCWGG	2 cut(s)	89, 699
Bst4CI	ACNGT	3 cut(s)	195, 572, 591
Bst6I	CTCTTC	3 cut(s)	135, 398, 444
BstBAI	YACGTR	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	1124
BstDEI	CTNAG	7 cut(s)	32, 303, 319, 330, 530, 813, 1038
BstDSI	CCRYGG	2 cut(s)	738, 1151
BstF5I	GGATG	3 cut(s)	200, 865, 1161
BstKTI	GATC	6 cut(s)	31, 421, 774, 940, 1026, 1068
BstMAI	GTCTC	4 cut(s)	370, 778, 818, 1137
BstMBI	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 388, 535
BstNI	CCWGG	2 cut(s)	89, 699
BstNSI	RCATGY	2 cut(s)	606, 1126
BstSCI	CCNGG	2 cut(s)	87, 697
BstSFI	CTRYAG	2 cut(s)	383, 676
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	369, 397, 400
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	28, 771, 1065
BstYI	RGATCY	3 cut(s)	28, 771, 1065
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	948
BtgI	CCRYGG	2 cut(s)	738, 1151
BtsCI	GGATG	3 cut(s)	200, 865, 1161
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	1 cut(s)	1036
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	1124
CciI	TCATGA	1 cut(s)	403
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	343, 621, 640
CviAII	CATG	7 cut(s)	404, 554, 603, 739, 1009, 1123, 1152
CviQI	GTAC	3 cut(s)	343, 621, 640
DdeI	CTNAG	7 cut(s)	32, 303, 319, 330, 530, 813, 1038
DpnI	GATC	6 cut(s)	30, 420, 773, 939, 1025, 1067
DpnII	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
Eam1104I	CTCTTC	3 cut(s)	135, 398, 444
EarI	CTCTTC	3 cut(s)	135, 398, 444
Eco130I	CCWWGG	2 cut(s)	738, 1151
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	87, 697
EcoT14I	CCWWGG	2 cut(s)	738, 1151
ErhI	CCWWGG	2 cut(s)	738, 1151
Esp3I	CGTCTC	2 cut(s)	818, 1137
FaeI	CATG	7 cut(s)	407, 557, 606, 742, 1012, 1126, 1155
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FatI	CATG	7 cut(s)	403, 553, 602, 738, 1008, 1122, 1151
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	383, 386, 389, 949
FokI	GGATG	3 cut(s)	187, 872, 1168
Fsp4HI	GCNGC	4 cut(s)	383, 386, 389, 949
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	4 cut(s)	383, 386, 389, 949
HaeIII	GGCC	1 cut(s)	948
HapII	CCGG	2 cut(s)	204, 270
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	7 cut(s)	407, 557, 606, 742, 1012, 1126, 1155
HinfI	GANTC	7 cut(s)	170, 181, 244, 294, 407, 786, 908
HpaII	CCGG	2 cut(s)	204, 270
HphI	GGTGA	3 cut(s)	132, 180, 1055
Hpy166II	GTNNAC	2 cut(s)	357, 513
Hpy188I	TCNGA	3 cut(s)	375, 533, 913
Hpy188III	TCNNGA	5 cut(s)	210, 404, 416, 458, 635
Hpy8I	GTNNAC	2 cut(s)	357, 513
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	5 cut(s)	410, 514, 683, 1078, 1137
HpyCH4III	ACNGT	3 cut(s)	195, 572, 591
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	2 cut(s)	385, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 388, 535
HpyF3I	CTNAG	7 cut(s)	32, 303, 319, 330, 530, 813, 1038
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	7 cut(s)	407, 557, 606, 742, 1012, 1126, 1155
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
LguI	GCTCTTC	2 cut(s)	398, 444
LmnI	GCTCC	2 cut(s)	282, 543
Lsp1109I	GCAGC	3 cut(s)	369, 397, 400
LweI	GCATC	3 cut(s)	88, 799, 850
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	3 cut(s)	548, 1004, 1033
MalI	GATC	6 cut(s)	30, 420, 773, 939, 1025, 1067
MboI	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	3 cut(s)	28, 771, 1065
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	6 cut(s)	213, 595, 657, 753, 794, 996
MlyI	GAGTC	1 cut(s)	780
MseI	TTAA	4 cut(s)	93, 630, 903, 1137
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	204, 270
MspR9I	CCNGG	2 cut(s)	89, 699
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	89, 699
MwoI	GCNNNNNNNGC	3 cut(s)	283, 388, 535
NcoI	CCATGG	2 cut(s)	738, 1151
NdeII	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
NlaIII	CATG	7 cut(s)	407, 557, 606, 742, 1012, 1126, 1155
NlaIV	GGNNCC	2 cut(s)	344, 924
NmeAIII	GCCGAG	1 cut(s)	768
NmuCI	GTSAC	2 cut(s)	1004, 1033
NspI	RCATGY	2 cut(s)	606, 1126
PaeI	GCATGC	1 cut(s)	1126
PagI	TCATGA	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	602
PciSI	GCTCTTC	2 cut(s)	398, 444
PfeI	GAWTC	6 cut(s)	170, 181, 244, 294, 407, 908
PflMI	CCANNNNNTGG	1 cut(s)	1068
PkrI	GCNGC	4 cut(s)	384, 387, 390, 950
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
Ppu21I	YACGTR	1 cut(s)	546
PscI	ACATGT	1 cut(s)	602
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	87, 697
PspGI	CCWGG	2 cut(s)	87, 697
PspN4I	GGNNCC	2 cut(s)	344, 924
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	3 cut(s)	28, 771, 1065
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	344, 622, 641
RsaNI	GTAC	3 cut(s)	343, 621, 640
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	2 cut(s)	398, 444
SaqAI	TTAA	4 cut(s)	93, 630, 903, 1137
SatI	GCNGC	4 cut(s)	383, 386, 389, 949
Sau3AI	GATC	6 cut(s)	28, 418, 771, 937, 1023, 1065
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	2 cut(s)	89, 699
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	3 cut(s)	88, 799, 850
SfcI	CTRYAG	2 cut(s)	383, 676
SmiMI	CAYNNNNRTG	1 cut(s)	402
SphI	GCATGC	1 cut(s)	1126
Sse9I	AATT	6 cut(s)	213, 595, 657, 753, 794, 996
SsiI	CCGC	1 cut(s)	949
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	87, 697
StyI	CCWWGG	2 cut(s)	738, 1151
TaaI	ACNGT	3 cut(s)	195, 572, 591
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	9 cut(s)	10, 173, 179, 292, 432, 486, 762, 1079, 1103
TasI	AATT	6 cut(s)	213, 595, 657, 753, 794, 996
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	1 cut(s)	951
TfiI	GAWTC	6 cut(s)	170, 181, 244, 294, 407, 908
Tru1I	TTAA	4 cut(s)	93, 630, 903, 1137
Tru9I	TTAA	4 cut(s)	93, 630, 903, 1137
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	2 cut(s)	1004, 1033
TseI	GCWGC	3 cut(s)	382, 385, 388
Tsp45I	GTSAC	2 cut(s)	1004, 1033
TspDTI	ATGAA	3 cut(s)	253, 392, 1172
TspRI	CASTG	1 cut(s)	1036
Van91I	CCANNNNNTGG	1 cut(s)	1068
XapI	RAATTY	2 cut(s)	595, 794
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	606, 1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.