Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011496

Physical Location & Seq

Genomic Coordinates Forward (+)

79770367 .. 79772546

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCTTGGGTTCAGCAACAAATCAAGGTTAATGATGGTTATTTGAACTACCCACCTCCATATGCTGGTCCCTTTTATAGAGAAGCAAATCCCTCAGTAGTACCATCACCACCTGCATCATCATCTGGTACAAAGATCAGTCCTGCTGTGCTTTTCATCATTGTGATTTTGGCTGTACTGTTCTTCATCTCTGGTTTGCTTCACCTGCTTGTTAGATTTCTTATAAAGCACCCATCTTCAGCTTCTTCTCAGACTAATAATAGGAGGTACCCAGAAATTTCTACTGCTGATGCTCTTCAGAGGCAGCTTCAGCAACTCTTCCACCTTCACGATTCGGGTCTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTATAGGGAGATTGTGGGTTTGAAAGAGCCGTTTGATTGTGCTGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTCAGATTGCTTCCTATGTGTAGCCATGCTTTCCATATCAACTGTATAGATACTTGGCTACTGTCGAATTCGACATGTCCTCTTTGTAGGGGTACCCTCTTCACTCCCGATTATGCAGTTGAGAACCCAATGTTCGATTTTGATGACTACAGAGAAGAAGATGGGTATCCTGGTCATGGAGAAAACGGATTCACTTCTAGTCAAAAAACAGTGGACATTGAGGAAGTTGTTGTTGACAATGGGGTTTTGCCTGTGAGACTTGGCAAGTTTAGAAAGGTAGATGCTGAGGTAGGGGAGACCGCAGGAGGAGAGACTAGTAGCAGTACATTGGATGCAAGAAGATGCTATTCAATGGGATCGTATCAGTATGTGCTTGATAATTCAGAACTCCGGGTTGCCTTATCGAAGGATCAACAGGGCCGCAATATAAAGCTAACAAAAGAGGAACACAATGGTAATCCTTCAATTGATAGTGATGTAGAGGCGAAGAAGATTGGTAGTGTGACCAAGGGTGAAAGCTACTCTGTTTCCAAGATCTGGCTCTGGTCTAAGAAGGGCAAGTATTCAAGCTCAATTGATACACAGACGGGTATGCCTTCATCTCTTAATACAGACTTGCCATGGATGAGAAAAACACAAGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

367

Amino Acids

40.87

Weight (kDa)

5.56

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	136 - 181	2.5e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	138 - 181	1.1e-13	Ring finger domain
zf-RING_11	PF17123	138 - 167	6.3e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40250
fragaria_vesca	FvH4_6g50460
malus_domestica	MD09G1036200.v1.1 MD17G1037800.v1.1
prunus_persica	Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1 Prupe.3G281500_v2.0.a1
pyrus_communis	pycom17g03400
rosa_chinensis	RchiOBHm_Chr2g0170871
rosa_laevigata	RLG00000021988
rosa_multiflora	Rmu_sc0009938.1_g000005
rosa_roxburghii	Rroxscaffold_2G00081000
rosa_rugosa	Rorug02G0551900
rosa_samantha	Rh2AG624700 Rh2BG635300 Rh2CG604100 Rh2DG646900
rosa_wichuraiana	Rw2G051750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AarI	CACCTGC	2 cut(s)	121, 213
Acc36I	ACCTGC	2 cut(s)	121, 213
Acc65I	GGTACC	2 cut(s)	267, 545
AccB1I	GGYRCC	2 cut(s)	267, 545
AccB7I	CCANNNNNTGG	2 cut(s)	65, 990
AciI	CCGC	2 cut(s)	753, 874
AclWI	GGATC	3 cut(s)	351, 817, 870
AcsI	RAATTY	2 cut(s)	276, 520
AcuI	CTGAAG	3 cut(s)	222, 281, 293
AfaI	GTAC	6 cut(s)	102, 130, 177, 269, 547, 778
AfiI	CCNNNNNNNGG	4 cut(s)	65, 382, 629, 990
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	5 cut(s)	46, 400, 804, 918, 1020
AhlI	ACTAGT	1 cut(s)	767
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	6 cut(s)	242, 307, 454, 886, 972, 1023
AluI	AGCT	6 cut(s)	242, 307, 454, 886, 972, 1023
Alw26I	GTCTC	3 cut(s)	703, 743, 758
AlwI	GGATC	3 cut(s)	351, 817, 870
AoxI	GGCC	1 cut(s)	871
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	2 cut(s)	276, 520
Asp718I	GGTACC	2 cut(s)	267, 545
AspS9I	GGNCC	2 cut(s)	68, 871
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	99, 194, 977
AvaII	GGWCC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	267, 545
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	4 cut(s)	29, 112, 241, 608
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	703, 743, 758
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	2 cut(s)	651, 768
BfmI	CTRYAG	1 cut(s)	601
BfuAI	ACCTGC	2 cut(s)	121, 213
BfuI	GTATCC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	987
BisI	GCNGC	2 cut(s)	305, 874
BlsI	GCNGC	2 cut(s)	306, 875
Bme1390I	CCNGG	2 cut(s)	624, 845
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	68, 871
BmiI	GGNNCC	3 cut(s)	70, 269, 547
BmrFI	CCNGG	2 cut(s)	624, 845
BmsI	GCATC	6 cut(s)	125, 280, 349, 724, 775, 785
Bpu10I	CCTNAGC	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	960, 1073
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 382, 629, 990
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	960, 1073
BseGI	GGATG	2 cut(s)	790, 1083
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	4 cut(s)	65, 382, 629, 990
BseMII	CTCAG	5 cut(s)	108, 263, 432, 469, 729
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	774
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	873
BshNI	GGYRCC	2 cut(s)	267, 545
BsiSI	CCGG	1 cut(s)	844
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	4 cut(s)	65, 382, 629, 990
BsmAI	GTCTC	3 cut(s)	703, 743, 758
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	873
Bso31I	GGTCTC	1 cut(s)	743
Bsp143I	GATC	5 cut(s)	135, 343, 809, 862, 987
Bsp19I	CCATGG	1 cut(s)	1073
BspACI	CCGC	2 cut(s)	753, 874
BspANI	GGCC	1 cut(s)	873
BspCNI	CTCAG	5 cut(s)	107, 262, 433, 468, 730
BspLI	GGNNCC	3 cut(s)	70, 269, 547
BspMI	ACCTGC	2 cut(s)	121, 213
BspPI	GGATC	3 cut(s)	351, 817, 870
BspQI	GCTCTTC	2 cut(s)	300, 369
BspT107I	GGYRCC	2 cut(s)	267, 545
BspTNI	GGTCTC	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	960, 1073
BssMI	GATC	5 cut(s)	135, 343, 809, 862, 987
BssT1I	CCWWGG	2 cut(s)	960, 1073
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	4 cut(s)	180, 497, 516, 664
Bst6I	CTCTTC	4 cut(s)	300, 323, 369, 557
BstDEI	CTNAG	6 cut(s)	94, 249, 441, 455, 738, 1002
BstDSI	CCRYGG	1 cut(s)	1073
BstF5I	GGATG	2 cut(s)	790, 1083
BstKTI	GATC	5 cut(s)	138, 346, 812, 865, 990
BstMAI	GTCTC	3 cut(s)	703, 743, 758
BstMBI	GATC	5 cut(s)	135, 343, 809, 862, 987
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 310, 460
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	622, 843
BstSFI	CTRYAG	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	987
BstYI	RGATCY	1 cut(s)	987
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	873
BtgI	CCRYGG	1 cut(s)	1073
BtsCI	GGATG	2 cut(s)	790, 1083
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	2 cut(s)	121, 213
Cfr13I	GGNCC	2 cut(s)	68, 871
Csp6I	GTAC	6 cut(s)	101, 129, 176, 268, 546, 777
CviAII	CATG	4 cut(s)	479, 528, 629, 1074
CviQI	GTAC	6 cut(s)	101, 129, 176, 268, 546, 777
DdeI	CTNAG	6 cut(s)	94, 249, 441, 455, 738, 1002
DpnI	GATC	5 cut(s)	137, 345, 811, 864, 989
DpnII	GATC	5 cut(s)	135, 343, 809, 862, 987
Eam1104I	CTCTTC	4 cut(s)	300, 323, 369, 557
EarI	CTCTTC	4 cut(s)	300, 323, 369, 557
Eco130I	CCWWGG	2 cut(s)	960, 1073
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	3 cut(s)	222, 281, 293
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	960, 1073
ErhI	CCWWGG	2 cut(s)	960, 1073
FaeI	CATG	4 cut(s)	482, 531, 632, 1077
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	4 cut(s)	478, 527, 628, 1073
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	305, 874
FokI	GGATG	2 cut(s)	797, 1090
Fsp4HI	GCNGC	2 cut(s)	305, 874
FspBI	CTAG	2 cut(s)	651, 768
GluI	GCNGC	2 cut(s)	305, 874
HaeIII	GGCC	1 cut(s)	873
HapII	CCGG	1 cut(s)	844
Hin1II	CATG	4 cut(s)	482, 531, 632, 1077
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	332, 642
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	3 cut(s)	99, 194, 977
Hpy166II	GTNNAC	3 cut(s)	438, 667, 688
Hpy188I	TCNGA	4 cut(s)	252, 300, 458, 838
Hpy188III	TCNNGA	3 cut(s)	329, 341, 560
Hpy8I	GTNNAC	3 cut(s)	438, 667, 688
HpyAV	CCTTC	6 cut(s)	335, 439, 853, 924, 1000, 1059
HpyCH4III	ACNGT	4 cut(s)	180, 497, 516, 664
HpyCH4V	TGCA	3 cut(s)	116, 569, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 310, 460
HpyF3I	CTNAG	6 cut(s)	94, 249, 441, 455, 738, 1002
Hsp92II	CATG	4 cut(s)	482, 531, 632, 1077
KpnI	GGTACC	2 cut(s)	271, 549
Kzo9I	GATC	5 cut(s)	135, 343, 809, 862, 987
LguI	GCTCTTC	2 cut(s)	300, 369
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	6 cut(s)	125, 280, 349, 724, 775, 785
MaeI	CTAG	2 cut(s)	651, 768
MaeIII	GTNAC	1 cut(s)	955
MalI	GATC	5 cut(s)	137, 345, 811, 864, 989
MboI	GATC	5 cut(s)	135, 343, 809, 862, 987
MfeI	CAATTG	2 cut(s)	918, 1026
MflI	RGATCY	1 cut(s)	987
MluCI	AATT	5 cut(s)	276, 520, 832, 918, 1026
MseI	TTAA	2 cut(s)	30, 1059
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	2 cut(s)	624, 845
MunI	CAATTG	2 cut(s)	918, 1026
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	3 cut(s)	205, 310, 460
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	1 cut(s)	1073
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	5 cut(s)	135, 343, 809, 862, 987
NlaIII	CATG	4 cut(s)	482, 531, 632, 1077
NlaIV	GGNNCC	3 cut(s)	70, 269, 547
NmuCI	GTSAC	1 cut(s)	955
NspI	RCATGY	1 cut(s)	531
PaqCI	CACCTGC	2 cut(s)	121, 213
PciI	ACATGT	1 cut(s)	527
PciSI	GCTCTTC	2 cut(s)	300, 369
PfeI	GAWTC	2 cut(s)	332, 642
PflMI	CCANNNNNTGG	2 cut(s)	65, 990
PkrI	GCNGC	2 cut(s)	306, 875
PscI	ACATGT	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	70, 269, 547
PspPI	GGNCC	2 cut(s)	68, 871
PsuI	RGATCY	1 cut(s)	987
RsaI	GTAC	6 cut(s)	102, 130, 177, 269, 547, 778
RsaNI	GTAC	6 cut(s)	101, 129, 176, 268, 546, 777
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	2 cut(s)	300, 369
SaqAI	TTAA	2 cut(s)	30, 1059
SatI	GCNGC	2 cut(s)	305, 874
Sau3AI	GATC	5 cut(s)	135, 343, 809, 862, 987
Sau96I	GGNCC	2 cut(s)	68, 871
ScrFI	CCNGG	2 cut(s)	624, 845
SfaNI	GCATC	6 cut(s)	125, 280, 349, 724, 775, 785
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	767
Sse9I	AATT	5 cut(s)	276, 520, 832, 918, 1026
SsiI	CCGC	2 cut(s)	753, 874
SspMI	CTAG	2 cut(s)	651, 768
StyD4I	CCNGG	2 cut(s)	622, 843
StyI	CCWWGG	2 cut(s)	960, 1073
TaaI	ACNGT	4 cut(s)	180, 497, 516, 664
TaqI	TCGA	4 cut(s)	518, 524, 588, 857
TasI	AATT	5 cut(s)	276, 520, 832, 918, 1026
TatI	WGTACW	2 cut(s)	175, 776
TauI	GCSGC	1 cut(s)	876
TfiI	GAWTC	2 cut(s)	332, 642
Tru1I	TTAA	2 cut(s)	30, 1059
Tru9I	TTAA	2 cut(s)	30, 1059
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	4 cut(s)	145, 175, 343, 1041
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	669
Van91I	CCANNNNNTGG	2 cut(s)	65, 990
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	276, 520
XceI	RCATGY	1 cut(s)	531
XspI	CTAG	2 cut(s)	651, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.