FvH4_6g51270

Rhomboid protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016228
Physical Location & Seq
Reverse (-)
38027903 .. 38028718
816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51270.t1

Sequence Viewer

Length: 816 bp
ATGGGTAGGCCATTGGTTTTCGAGATCTTGGAGAAACCAGTCACTAGTTGCTTTATAGGATTATGCAGTGCAATTTGGTTCTACATACAGAAGAACAATATTGGGTATTCACATGTGGGGTTGAGTTACGAGACTGCAGTTGCAGGGCACCATTGGAGGATTATTACTTCGGCCTTTTCCCATATTAGCATTCTTCATCTTGTTTTCAATATGAGCGCGCTTTGGAGTCTTGGGGTTGTGGAAGACTTGGGATCTATAGGGCTTGGTGTGCAGTATTATCTGCATTACACGCTCGTCTTGGTTGTACTGTCTGGGGTGCTGGTTTTGGGGATATACCATGTGTTGATACAGAAATTTAAGTTGGAGTATTTCCGGAGAGTGACGGCTGTTGGGTACTCTTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCGACATCCAAGTTGAACCTGTTTGGATTGCTTTCGCTTCCCATTAGTTTTGCACCTTTTGAGTCTCTTATTTTTACTTCAATCATTGTTCCACAAGCAAGTTTTATTGGCCATTTATCTGGAATCATTGTTGGGTATGCTATTGCTTGGGGTTTGATACACGGGATGAACAATTATTGGGCTGTTTCCATGTTAGGATGGATTGTGCTGGTTTCCGCCTTCAGTTTGAAGAAATCTGGTGCCTATGATTTCAGTTTTCTTGAGATTGAGTCCGTTACTGATTCTTCGCTGCCATCTGTACGGTTTATTGCATCTGGAAATGGTAGAACATTGCAGATGAGTGCATTGCCAGCTGCAGGTGTTGAGATTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

272

Amino Acids

29.78

Weight (kDa)

8.39

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 49 - 200 1.1e-23 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59520
fragaria_vesca FvH4_6g51270
malus_domestica MD10G1004100.v1.1
prunus_persica Prupe.8G006500_v2.0.a1
pyrus_communis pycom10g00330
rosa_chinensis RchiOBHm_Chr2g0172871
rosa_laevigata RLG00000022133
rosa_multiflora Rmu_sc0002979.1_g000006
rosa_roxburghii Rroxscaffold_2G00079470
rosa_rugosa Rorug02G0562900
rosa_samantha Rh2AG639800 Rh2BG653200 Rh2CG619000 Rh2DG666900
rosa_wichuraiana Rw2G052820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 788
AccB1I GGYRCC 2 cut(s) 147, 680
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 1 cut(s) 657
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 646
AfaI GTAC 3 cut(s) 306, 395, 741
AfiI CCNNNNNNNGG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 208, 457, 522, 670
AhlI ACTAGT 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 794
AluI AGCT 1 cut(s) 794
Alw26I GTCTC 2 cut(s) 125, 510
AlwI GGATC 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 3 cut(s) 8, 171, 550
ApeKI GCWGC 2 cut(s) 730, 794
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 2 cut(s) 218, 220
BaeGI GKGCMC 1 cut(s) 150
BaeI ACNNNNGTAYC 2 cut(s) 385, 418
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 2 cut(s) 147, 680
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 717, 781
BccI CCATC 2 cut(s) 633, 742
BceAI ACGGC 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 125, 510
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 3 cut(s) 135, 255, 795
BfuAI ACCTGC 1 cut(s) 788
BglII AGATCT 1 cut(s) 24
BisI GCNGC 2 cut(s) 731, 795
BlsI GCNGC 2 cut(s) 732, 796
BmiI GGNNCC 2 cut(s) 149, 682
BmsI GCATC 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 722
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 770, 785
BseAI TCCGGA 1 cut(s) 372
BseGI GGATG 4 cut(s) 423, 446, 612, 644
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMI GCAATG 2 cut(s) 770, 785
BseNI ACTGG 1 cut(s) 38
BsePI GCGCGC 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 2 cut(s) 717, 781
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 3 cut(s) 10, 173, 552
BshNI GGYRCC 2 cut(s) 147, 680
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 2 cut(s) 125, 510
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 3 cut(s) 10, 173, 552
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 24, 251
BspACI CCGC 1 cut(s) 657
BspANI GGCC 3 cut(s) 10, 173, 552
BspEI TCCGGA 1 cut(s) 372
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 149, 682
BspMAI CTGCAG 2 cut(s) 139, 799
BspMI ACCTGC 1 cut(s) 788
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 2 cut(s) 147, 680
BsrDI GCAATG 2 cut(s) 770, 785
BsrI ACTGG 1 cut(s) 38
BssHII GCGCGC 1 cut(s) 216
BssMI GATC 2 cut(s) 24, 251
Bst4CI ACNGT 2 cut(s) 309, 744
BstC8I GCNNGC 2 cut(s) 218, 792
BstF5I GGATG 4 cut(s) 423, 446, 612, 644
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 218, 220
BstKTI GATC 2 cut(s) 27, 254
BstMAI GTCTC 2 cut(s) 125, 510
BstMBI GATC 2 cut(s) 24, 251
BstMWI GCNNNNNNNGC 3 cut(s) 268, 289, 791
BstNSI RCATGY 1 cut(s) 116
BstSFI CTRYAG 3 cut(s) 135, 255, 795
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 717, 781
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 24, 251
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 2 cut(s) 24, 251
BsuRI GGCC 3 cut(s) 10, 173, 552
BtsCI GGATG 4 cut(s) 423, 446, 612, 644
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 2 cut(s) 218, 792
CfoI GCGC 2 cut(s) 218, 220
Csp6I GTAC 3 cut(s) 305, 394, 740
CviAII CATG 3 cut(s) 113, 338, 631
CviJI RGCY 7 cut(s) 10, 173, 262, 386, 552, 623, 794
CviKI_1 RGCY 7 cut(s) 10, 173, 262, 386, 552, 623, 794
CviQI GTAC 3 cut(s) 305, 394, 740
DpnI GATC 2 cut(s) 26, 253
DpnII GATC 2 cut(s) 24, 251
EaeI YGGCCR 1 cut(s) 550
EciI GGCGGA 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 646
FaeI CATG 3 cut(s) 116, 341, 634
FatI CATG 3 cut(s) 112, 337, 630
Fnu4HI GCNGC 2 cut(s) 731, 795
FokI GGATG 4 cut(s) 430, 433, 619, 651
Fsp4HI GCNGC 2 cut(s) 731, 795
FspBI CTAG 1 cut(s) 45
GlaI GCGC 2 cut(s) 217, 219
GluI GCNGC 2 cut(s) 731, 795
HaeIII GGCC 3 cut(s) 10, 173, 552
HapII CCGG 1 cut(s) 373
HhaI GCGC 2 cut(s) 218, 220
Hin1II CATG 3 cut(s) 116, 341, 634
Hin6I GCGC 2 cut(s) 216, 218
HinP1I GCGC 2 cut(s) 216, 218
HinfI GANTC 5 cut(s) 226, 503, 564, 710, 722
HpaII CCGG 1 cut(s) 373
Hpy188III TCNNGA 5 cut(s) 22, 373, 561, 701, 756
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 2 cut(s) 309, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 289, 791
Hsp92II CATG 3 cut(s) 116, 341, 634
HspAI GCGC 2 cut(s) 216, 218
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 24, 251
Lsp1109I GCAGC 2 cut(s) 717, 781
LweI GCATC 1 cut(s) 761
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 4 cut(s) 40, 125, 379, 715
MalI GATC 2 cut(s) 26, 253
MboI GATC 2 cut(s) 24, 251
MboII GAAGA 5 cut(s) 103, 185, 254, 682, 717
MflI RGATCY 2 cut(s) 24, 251
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 4 cut(s) 72, 353, 423, 613
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 3 cut(s) 235, 512, 719
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 552
MroI TCCGGA 1 cut(s) 372
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 1 cut(s) 373
Mva1269I GAATGC 1 cut(s) 189
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 268, 289, 791
NdeII GATC 2 cut(s) 24, 251
NlaIII CATG 3 cut(s) 116, 341, 634
NlaIV GGNNCC 2 cut(s) 149, 682
NmuCI GTSAC 2 cut(s) 40, 379
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 788
PauI GCGCGC 1 cut(s) 216
PciI ACATGT 1 cut(s) 112
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 564, 722
PkrI GCNGC 2 cut(s) 732, 796
PleI GAGTC 3 cut(s) 234, 511, 718
PpsI GAGTC 3 cut(s) 234, 511, 718
PscI ACATGT 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 149, 682
PstI CTGCAG 2 cut(s) 139, 799
PsuI RGATCY 2 cut(s) 24, 251
PteI GCGCGC 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 3 cut(s) 306, 395, 741
RsaNI GTAC 3 cut(s) 305, 394, 740
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 731, 795
Sau3AI GATC 2 cut(s) 24, 251
SchI GAGTC 3 cut(s) 235, 512, 719
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 462, 499, 796, 802
SfaNI GCATC 1 cut(s) 761
SfcI CTRYAG 3 cut(s) 135, 255, 795
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 4 cut(s) 72, 353, 423, 613
SsiI CCGC 1 cut(s) 657
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 309, 744
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 72, 353, 423, 613
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 2 cut(s) 564, 722
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 40, 379
TseI GCWGC 2 cut(s) 730, 794
Tsp45I GTSAC 2 cut(s) 40, 379
TspDTI ATGAA 2 cut(s) 185, 623
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 116
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.