Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Forward (+)

38136110 .. 38138938

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51431.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGACTCGCACACTAACGATGCCAACCATGACGTAGAAGCTCACGACATTGACCGGCCAGGCCACAGAGGAGCTGAGGCGGCGGAGGACGAAGACTACAAGTCGTCTCATCAGTCTCAGCCTCACACCGGCGACGGCGCCAGCCCTGGGAAAATCTTTATAGGGGGTTTGGCGAGAGAGACCACTACAGCTCAGTTTGTGAAGCATTTTGGTAATTATGGGGAGATTATAGATTCGGTTATAATGAAGGATCGGAAAACCGGGCAGCCCCGGGGGTTCGGGTTTGTGACGTATGCTGACCCTTCTGTGGTTGATACTGTCATAGAAGAGACTCATGTTATCAATGGCAAGCAAGTGGAGATCAAGAGGACAATACCGAGGGGAGCAATGGGGTCGAAGGACTTCAAGACGAAGAAGATTTTTGTGGGAGGAATTCCCACAACGGTGAATGAAGATGAGTTTAGCGACTTCTTTTCACAGTTTGGAGAGGTGAAGGAACATCAGATTATGCGGGACCATTCCACTGGTCGTTCACGGGGATTTGGATTTGTTACCTTTGAGACAGAGCAAGCAGTTGATAATCTCTTGGACAAGGGGAACAAGCTTGAGTTTGCTGGAGCTCAGGTGGAGATCAAAAAGGCAGAGCCAAAGAAGCAAACCACCCTACCCCCACCCCCATCAAAACGGTACAATGATTCTAGGCCGGCGTATGGTGGTGGATATGGAGATAGTTATGGTGGATTTGGAGGTGGTGGAGGCTATGGTGGTGCAGGTGCTTATAGATCAACTGCATCAGCGTATGCTGGAAGAGGCACTGCGTATGGAGGATATAGTGGAAGTGAGTTTGGTGGATATGGAGTATATGGCGGTGGCGGTATAGGGGCGTATAGGGGAGAACCCTCAGTAGGAGGCTACGCTGGCCGTTATGGAGGAGCCTATAGCAGAGGTTATGATCTTGGAGGTGGGGGTGGATATGGTGGGACAGGTGGTGAGAGTTATGGGGGATATGGAAGTGCTGGTGGTGGAGCTGGTGGTGGTTACGGGAGTGGGAGTGGCTATGACGCCGGCTTTGGAGGTGGCTATGGAGGTGGCAGTGGAGCTTCCTTTTATGGTAGTAGTAGAGGAGGATATGGTGGTGCTGGTAGTGGTCGATATCATCCTTATGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

391

Amino Acids

40.25

Weight (kDa)

6.27

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	57 - 120	1.1e-08	RNA recognition motif
RRM_1	PF00076	59 - 127	1.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AarI	CACCTGC	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	5 cut(s)	80, 83, 511, 867, 873
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	2 cut(s)	56, 919
AcsI	RAATTY	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	138, 1062
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	5 cut(s)	128, 147, 307, 710, 905
AgsI	TTSAA	1 cut(s)	406
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	58, 145
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	7 cut(s)	41, 74, 191, 604, 620, 1028, 1100
AluI	AGCT	7 cut(s)	41, 74, 191, 604, 620, 1028, 1100
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	5 cut(s)	111, 120, 173, 323, 554
AlwI	GGATC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	4 cut(s)	56, 61, 701, 919
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	432
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	3 cut(s)	262, 271, 272
AsuHPI	GGTGA	3 cut(s)	457, 502, 1001
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	622
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	685
BceAI	ACGGC	2 cut(s)	151, 906
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	2 cut(s)	60, 147
BcnI	CCSGG	3 cut(s)	262, 271, 272
BcoDI	GTCTC	5 cut(s)	111, 120, 173, 323, 554
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	186, 937
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	761
BisI	GCNGC	2 cut(s)	81, 266
BlsI	GCNGC	2 cut(s)	82, 267
Bme1390I	CCNGG	5 cut(s)	60, 147, 262, 271, 272
Bme18I	GGWCC	1 cut(s)	514
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	139, 515, 934
BmrFI	CCNGG	5 cut(s)	60, 147, 262, 271, 272
BmsI	GCATC	2 cut(s)	10, 800
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	2 cut(s)	75, 621
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	3 cut(s)	262, 271, 272
BsaHI	GRCGYC	2 cut(s)	138, 1062
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	6 cut(s)	145, 146, 269, 270, 271, 377
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 1036, 1066
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 147, 307, 710, 905
Bse118I	RCCGGY	4 cut(s)	54, 128, 703, 1064
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	60, 147
BseDI	CCNNGG	6 cut(s)	145, 146, 269, 270, 271, 377
BseGI	GGATG	1 cut(s)	1156
BseLI	CCNNNNNNNGG	5 cut(s)	128, 147, 307, 710, 905
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	5 cut(s)	66, 131, 206, 635, 915
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	84, 945, 1137
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	4 cut(s)	58, 63, 703, 921
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	6 cut(s)	55, 129, 261, 271, 704, 1065
BslFI	GGGAC	2 cut(s)	527, 994
BslI	CCNNNNNNNGG	5 cut(s)	128, 147, 307, 710, 905
BsmAI	GTCTC	5 cut(s)	111, 120, 173, 323, 554
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	527, 994
BsnI	GGCC	4 cut(s)	58, 63, 703, 921
Bso31I	GGTCTC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	250, 360, 630, 782, 952
BspACI	CCGC	5 cut(s)	80, 83, 511, 867, 873
BspANI	GGCC	4 cut(s)	58, 63, 703, 921
BspCNI	CTCAG	5 cut(s)	67, 130, 205, 634, 914
BspLI	GGNNCC	3 cut(s)	139, 515, 934
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	4 cut(s)	54, 128, 703, 1064
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	4 cut(s)	54, 128, 703, 1064
BssECI	CCNNGG	6 cut(s)	145, 146, 269, 270, 271, 377
BssMI	GATC	5 cut(s)	250, 360, 630, 782, 952
BssNI	GRCGYC	2 cut(s)	138, 1062
Bst2UI	CCWGG	2 cut(s)	60, 147
Bst4CI	ACNGT	4 cut(s)	319, 445, 480, 687
Bst6I	CTCTTC	2 cut(s)	321, 802
BstACI	GRCGYC	2 cut(s)	138, 1062
BstC8I	GCNNGC	6 cut(s)	142, 350, 570, 705, 919, 1066
BstDEI	CTNAG	5 cut(s)	75, 117, 192, 621, 901
BstF5I	GGATG	1 cut(s)	1156
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	253, 363, 633, 785, 955
BstMAI	GTCTC	5 cut(s)	111, 120, 173, 323, 554
BstMBI	GATC	5 cut(s)	250, 360, 630, 782, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 652, 918
BstNI	CCWGG	2 cut(s)	60, 147
BstSCI	CCNGG	5 cut(s)	58, 145, 260, 269, 270
BstSFI	CTRYAG	2 cut(s)	186, 937
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	58, 63, 703, 921
BtsCI	GGATG	1 cut(s)	1156
BtsI	GCAGTG	2 cut(s)	813, 1099
BtsIMutI	CAGTG	3 cut(s)	522, 813, 1099
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	6 cut(s)	142, 350, 570, 705, 919, 1066
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	4 cut(s)	54, 128, 703, 1064
Cfr13I	GGNCC	1 cut(s)	514
Cfr9I	CCCGGG	1 cut(s)	270
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	2 cut(s)	29, 335
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	5 cut(s)	75, 117, 192, 621, 901
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	252, 362, 632, 784, 954
DpnII	GATC	5 cut(s)	250, 360, 630, 782, 952
DriI	GACNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	56, 919
Eam1104I	CTCTTC	2 cut(s)	321, 802
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	2 cut(s)	321, 802
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	1154
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	58, 145
EcoRV	GATATC	1 cut(s)	1154
EcoT38I	GRGCYC	1 cut(s)	622
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	32, 338
FaqI	GGGAC	2 cut(s)	527, 994
FatI	CATG	2 cut(s)	28, 334
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	81, 266
FokI	GGATG	1 cut(s)	1143
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	81, 266
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	81, 266
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	58, 63, 703, 921
HapII	CCGG	6 cut(s)	55, 129, 261, 271, 704, 1065
HgaI	GACGC	1 cut(s)	1070
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	138, 1062
Hin1II	CATG	2 cut(s)	32, 338
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	4 cut(s)	5, 233, 331, 695
HpaII	CCGG	6 cut(s)	55, 129, 261, 271, 704, 1065
HphI	GGTGA	3 cut(s)	457, 502, 1001
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	2 cut(s)	255, 504
Hpy188III	TCNNGA	3 cut(s)	44, 364, 406
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	241, 312, 391, 487
HpyCH4III	ACNGT	4 cut(s)	319, 445, 480, 687
HpyCH4IV	ACGT	2 cut(s)	33, 290
HpyCH4V	TGCA	2 cut(s)	770, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 652, 918
HpyF3I	CTNAG	5 cut(s)	75, 117, 192, 621, 901
HpySE526I	ACGT	2 cut(s)	33, 290
Hsp92I	GRCGYC	2 cut(s)	138, 1062
Hsp92II	CATG	2 cut(s)	32, 338
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	2 cut(s)	703, 1064
KroNI	GCCGGC	2 cut(s)	705, 1066
Kzo9I	GATC	5 cut(s)	250, 360, 630, 782, 952
LmnI	GCTCC	6 cut(s)	71, 383, 617, 932, 1025, 1097
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	10, 800
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	33, 290
MaeIII	GTNAC	3 cut(s)	286, 550, 1037
MalI	GATC	5 cut(s)	252, 362, 632, 784, 954
MboI	GATC	5 cut(s)	250, 360, 630, 782, 952
MboII	GAAGA	6 cut(s)	104, 338, 424, 427, 464, 819
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	2 cut(s)	214, 432
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	325
MroNI	GCCGGC	2 cut(s)	703, 1064
MroXI	GAANNNNTTC	1 cut(s)	401
MslI	CAYNNNNRTG	2 cut(s)	443, 1161
MspI	CCGG	6 cut(s)	55, 129, 261, 271, 704, 1065
MspR9I	CCNGG	5 cut(s)	60, 147, 262, 271, 272
MvaI	CCWGG	2 cut(s)	60, 147
MwoI	GCNNNNNNNGC	3 cut(s)	80, 652, 918
NaeI	GCCGGC	2 cut(s)	705, 1066
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	3 cut(s)	262, 271, 272
NdeII	GATC	5 cut(s)	250, 360, 630, 782, 952
NgoMIV	GCCGGC	2 cut(s)	703, 1064
NlaIII	CATG	2 cut(s)	32, 338
NlaIV	GGNNCC	3 cut(s)	139, 515, 934
NmuCI	GTSAC	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	761
PasI	CCCWGGG	1 cut(s)	146
PdiI	GCCGGC	2 cut(s)	705, 1066
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	233, 695
PkrI	GCNGC	2 cut(s)	82, 267
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	58, 145
PspGI	CCWGG	2 cut(s)	58, 145
PspN4I	GGNNCC	3 cut(s)	139, 515, 934
PspPI	GGNCC	1 cut(s)	514
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	2 cut(s)	443, 1161
SacI	GAGCTC	1 cut(s)	622
SatI	GCNGC	2 cut(s)	81, 266
Sau3AI	GATC	5 cut(s)	250, 360, 630, 782, 952
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	5 cut(s)	60, 147, 262, 271, 272
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	10, 800
SfcI	CTRYAG	2 cut(s)	186, 937
SfoI	GGCGCC	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	514
SmaI	CCCGGG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	443, 1161
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	2 cut(s)	214, 432
SsiI	CCGC	5 cut(s)	80, 83, 511, 867, 873
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	5 cut(s)	58, 145, 260, 269, 270
TaaI	ACNGT	4 cut(s)	319, 445, 480, 687
TaiI	ACGT	2 cut(s)	36, 293
TaqI	TCGA	2 cut(s)	395, 1150
TasI	AATT	2 cut(s)	214, 432
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	233, 695
TscAI	CASTG	3 cut(s)	529, 820, 1099
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	260, 465
TspMI	CCCGGG	1 cut(s)	270
TspRI	CASTG	3 cut(s)	529, 820, 1099
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	432
XmaI	CCCGGG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.