Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Reverse (-)

1904315 .. 1906889

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1026600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTTTCGGACCAATGACCCCAACCTCGAAGGCGAAGCTCAGGACAATAACCAGCCAGACCACAGACACGAGACGGCGGAGGATGACGACTACGGCAGGTCCCAGCCTCAAACTGGCGACGGCGCCAGCCCCGGGAAAATCTTTATAGGGGGTTTGGCAAGAGAGACTACTACAGCGCAATTTATAAAGTATTTTGGTGCGTACGGTGAGATTATAGATTCGGTGATAATGAAGGACCGGAAGACGGGGCAACCCCGTGGTTTCGGGTTTGTGACGTATGCAGACCCCTCTGTGGTTGATAGAGTCATTGAGGAGACTCATGTTATCAATGGCAAACAAGTCGAAATCAAGCGAACAATACCCCGGGGAGCAATGGGGTCTAAGGATTTCAAGACTAAGAAGATATTTGTGGGTGGAATTCCAACAACCGTAAATGAAGAGGAGTTTAGCGACTTCTTTTCACAGTACGGAGAGGTTAAGGAACATCAGATTATGCGGGACCACTCCACCGGTCGCTCCCGTGGATTTGGATTTGTCACCTTTGACACAGATCAAGCGGTTGATGAACTCTTGGACAAGGGGAACAAGCTTGATTTTGCTGGAGCTCAGGTGGAGATAAAAAAGGCAGAGCCAAAGAAGCCAAACCAACCTGCACCACCATCGAAACGTTATAATGATTCTAGACCTGCATATGGTGGTGGGTATGGAGAAAGCTATGGTGGATATGGAAGTGGCAGTTATGGTGGTGCTGGTGCTTATAGGTCAGCTGCTGCCTATGGTGGTAGAGGGAGTGCTTATGGAGGATATGGTGGCAGTGAATTTGGCGGATATGGAGTATATGGCGGTGGCAGTGGTGGTGGTGGTATAGGGGCTTATAGGGGAGAATCCTCCATGGGATATTCAGGCCGTTACGGAGGAGCCTACAGCAGAGGTTATGATATAGGAGGTGGTTATGGTGGAGCTGGCGAGAGTTATGGGGGATATGGAGGTGCTGGCGGGGCAGCTGGTGGCGGTGGTTATGGGAGTGGCTATGATGCAGGTTTTGGAGGTGGCTACGGAGGTGGTAGTGGAGCTTCCTTTTACGGTAGTAGAGGAGGGGGATATGGTGGTGCAGGTAGTGGTCGATATCATCCATATGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

383

Amino Acids

39.68

Weight (kDa)

5.94

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 107	7e-13	RNA recognition motif
RRM_7	PF16367	134 - 197	4.3e-08	RNA recognition motif
RRM_1	PF00076	136 - 204	1.6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	188, 675
Acc36I	ACCTGC	5 cut(s)	90, 661, 697, 1031, 1106
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	7 cut(s)	80, 499, 560, 828, 846, 999, 1014
AclI	AACGTT	1 cut(s)	670
AcsI	RAATTY	2 cut(s)	420, 821
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	206, 470
AfiI	CCNNNNNNNGG	5 cut(s)	116, 135, 247, 295, 695
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	8 cut(s)	41, 592, 608, 717, 770, 965, 1007, 1076
AluI	AGCT	8 cut(s)	41, 592, 608, 717, 770, 965, 1007, 1076
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	3 cut(s)	68, 161, 311
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	2 cut(s)	134, 366
AoxI	GGCC	1 cut(s)	907
ApeKI	GCWGC	3 cut(s)	770, 773, 1004
ApoI	RAATTY	2 cut(s)	420, 821
AsiGI	ACCGGT	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	128, 181
AspS9I	GGNCC	4 cut(s)	12, 102, 238, 502
AsuC2I	CCSGG	4 cut(s)	135, 136, 367, 368
AsuHPI	GGTGA	3 cut(s)	221, 238, 532
AvaI	CYCGRG	2 cut(s)	134, 366
AvaII	GGWCC	4 cut(s)	12, 102, 238, 502
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	1060, 1092
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	3 cut(s)	757, 760, 1016
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	4 cut(s)	93, 112, 139, 894
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 645, 679
BcnI	CCSGG	4 cut(s)	135, 136, 367, 368
BcoDI	GTCTC	3 cut(s)	68, 161, 311
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	2 cut(s)	174, 925
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	5 cut(s)	90, 661, 697, 1031, 1106
BisI	GCNGC	3 cut(s)	771, 774, 1005
BlsI	GCNGC	3 cut(s)	772, 775, 1006
Bme1390I	CCNGG	4 cut(s)	135, 136, 367, 368
Bme18I	GGWCC	4 cut(s)	12, 102, 238, 502
BmeT110I	CYCGRG	2 cut(s)	134, 366
BmgT120I	GGNCC	4 cut(s)	12, 102, 238, 502
BmiI	GGNNCC	4 cut(s)	104, 127, 503, 922
BmrFI	CCNGG	4 cut(s)	135, 136, 367, 368
BmsI	GCATC	1 cut(s)	1027
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	2 cut(s)	42, 609
BpuMI	CCSGG	4 cut(s)	135, 136, 367, 368
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	8 cut(s)	133, 134, 259, 365, 366, 367, 523, 894
BsaWI	WCCGGW	2 cut(s)	240, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 135, 247, 295, 695
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	8 cut(s)	133, 134, 259, 365, 366, 367, 523, 894
BseGI	GGATG	2 cut(s)	91, 1132
BseLI	CCNNNNNNNGG	5 cut(s)	116, 135, 247, 295, 695
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	56, 623
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	4 cut(s)	329, 458, 933, 1110
BseXI	GCAGC	3 cut(s)	757, 760, 1016
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	2 cut(s)	639, 1134
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	909
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	134, 366
BsiSI	CCGG	4 cut(s)	135, 241, 367, 513
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	88, 515
BslI	CCNNNNNNNGG	5 cut(s)	116, 135, 247, 295, 695
BsmAI	GTCTC	3 cut(s)	68, 161, 311
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	88, 515
BsnI	GGCC	1 cut(s)	909
BsoBI	CYCGRG	2 cut(s)	134, 366
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	1 cut(s)	553
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	7 cut(s)	80, 499, 560, 828, 846, 999, 1014
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	2 cut(s)	55, 622
BspLI	GGNNCC	4 cut(s)	104, 127, 503, 922
BspMI	ACCTGC	5 cut(s)	90, 661, 697, 1031, 1106
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	8 cut(s)	133, 134, 259, 365, 366, 367, 523, 894
BssMI	GATC	1 cut(s)	553
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	894
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	4 cut(s)	209, 433, 468, 1088
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	130, 967, 997
BstDEI	CTNAG	4 cut(s)	42, 384, 399, 609
BstDSI	CCRYGG	3 cut(s)	259, 523, 894
BstF5I	GGATG	2 cut(s)	91, 1132
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 181
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	3 cut(s)	68, 161, 311
BstMBI	GATC	1 cut(s)	553
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 1001
BstSCI	CCNGG	4 cut(s)	133, 134, 365, 366
BstSFI	CTRYAG	2 cut(s)	174, 925
BstV1I	GCAGC	3 cut(s)	757, 760, 1016
BstV2I	GAAGAC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	909
BtgI	CCRYGG	3 cut(s)	259, 523, 894
BtsCI	GGATG	2 cut(s)	91, 1132
BtsI	GCAGTG	2 cut(s)	823, 859
BtsIMutI	CAGTG	2 cut(s)	823, 859
BveI	ACCTGC	5 cut(s)	90, 661, 697, 1031, 1106
Cac8I	GCNNGC	3 cut(s)	130, 967, 997
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	2 cut(s)	128, 181
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	4 cut(s)	12, 102, 238, 502
Cfr9I	CCCGGG	2 cut(s)	134, 366
Csp6I	GTAC	2 cut(s)	205, 469
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	2 cut(s)	323, 895
CviQI	GTAC	2 cut(s)	205, 469
DdeI	CTNAG	4 cut(s)	42, 384, 399, 609
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	2 cut(s)	95, 843
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	1130
Eco47I	GGWCC	4 cut(s)	12, 102, 238, 502
Eco53kI	GAGCTC	1 cut(s)	608
Eco88I	CYCGRG	2 cut(s)	134, 366
EcoICRI	GAGCTC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	1130
EcoT14I	CCWWGG	1 cut(s)	894
EcoT38I	GRGCYC	1 cut(s)	610
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	894
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	326, 898
FaqI	GGGAC	2 cut(s)	88, 515
FatI	CATG	2 cut(s)	322, 894
FauI	CCCGC	2 cut(s)	492, 992
FauNDI	CATATG	2 cut(s)	694, 1138
Fnu4HI	GCNGC	3 cut(s)	771, 774, 1005
FokI	GGATG	2 cut(s)	98, 1119
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	3 cut(s)	771, 774, 1005
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	2 cut(s)	127, 180
GluI	GCNGC	3 cut(s)	771, 774, 1005
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	4 cut(s)	135, 241, 367, 513
HhaI	GCGC	2 cut(s)	128, 181
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	326, 898
Hin6I	GCGC	2 cut(s)	126, 179
HinP1I	GCGC	2 cut(s)	126, 179
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	221, 306, 319, 680, 887
HpaII	CCGG	4 cut(s)	135, 241, 367, 513
HphI	GGTGA	3 cut(s)	221, 238, 532
Hpy188I	TCNGA	2 cut(s)	12, 492
Hpy188III	TCNNGA	3 cut(s)	44, 394, 684
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	26, 229
HpyCH4III	ACNGT	4 cut(s)	209, 433, 468, 1088
HpyCH4IV	ACGT	2 cut(s)	278, 670
HpyCH4V	TGCA	5 cut(s)	284, 656, 692, 1040, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 1001
HpyF3I	CTNAG	4 cut(s)	42, 384, 399, 609
HpySE526I	ACGT	2 cut(s)	278, 670
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	326, 898
HspAI	GCGC	2 cut(s)	126, 179
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	6 cut(s)	371, 524, 605, 920, 962, 1073
Lsp1109I	GCAGC	3 cut(s)	757, 760, 1016
LweI	GCATC	1 cut(s)	1027
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	2 cut(s)	278, 670
MaeIII	GTNAC	3 cut(s)	274, 538, 911
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	3 cut(s)	256, 415, 452
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	3 cut(s)	182, 420, 821
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	313, 315
MmeI	TCCRAC	1 cut(s)	449
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	1137
MspA1I	CMGCKG	2 cut(s)	770, 1007
MspI	CCGG	4 cut(s)	135, 241, 367, 513
MspR9I	CCNGG	4 cut(s)	135, 136, 367, 368
MwoI	GCNNNNNNNGC	2 cut(s)	640, 1001
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	4 cut(s)	135, 136, 367, 368
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	2 cut(s)	694, 1138
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	2 cut(s)	326, 898
NlaIV	GGNNCC	4 cut(s)	104, 127, 503, 922
NmuCI	GTSAC	2 cut(s)	274, 538
PfeI	GAWTC	3 cut(s)	221, 680, 887
Pfl23II	CGTACG	1 cut(s)	204
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	772, 775, 1006
PleI	GAGTC	2 cut(s)	313, 314
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	2 cut(s)	313, 314
PpuMI	RGGWCCY	1 cut(s)	102
PsiI	TTATAA	2 cut(s)	188, 675
Psp124BI	GAGCTC	1 cut(s)	610
Psp1406I	AACGTT	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	105
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	4 cut(s)	104, 127, 503, 922
PspPI	GGNCC	4 cut(s)	12, 102, 238, 502
PspPPI	RGGWCCY	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	2 cut(s)	770, 1007
RsaI	GTAC	2 cut(s)	206, 470
RsaNI	GTAC	2 cut(s)	205, 469
RseI	CAYNNNNRTG	1 cut(s)	1137
SacI	GAGCTC	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	771, 774, 1005
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	4 cut(s)	12, 102, 238, 502
SchI	GAGTC	2 cut(s)	313, 315
ScrFI	CCNGG	4 cut(s)	135, 136, 367, 368
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	1027
SfcI	CTRYAG	2 cut(s)	174, 925
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	4 cut(s)	12, 102, 238, 502
SmaI	CCCGGG	2 cut(s)	136, 368
SmiMI	CAYNNNNRTG	1 cut(s)	1137
Sse9I	AATT	3 cut(s)	182, 420, 821
SsiI	CCGC	7 cut(s)	80, 499, 560, 828, 846, 999, 1014
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	4 cut(s)	133, 134, 365, 366
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	4 cut(s)	209, 433, 468, 1088
TaiI	ACGT	2 cut(s)	281, 673
TaqI	TCGA	4 cut(s)	30, 345, 665, 1126
TasI	AATT	3 cut(s)	182, 420, 821
TfiI	GAWTC	3 cut(s)	221, 680, 887
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	2 cut(s)	823, 859
TseFI	GTSAC	2 cut(s)	274, 538
TseI	GCWGC	3 cut(s)	770, 773, 1004
Tsp45I	GTSAC	2 cut(s)	274, 538
TspDTI	ATGAA	3 cut(s)	248, 453, 582
TspGWI	ACGGA	3 cut(s)	486, 930, 1074
TspMI	CCCGGG	2 cut(s)	134, 366
TspRI	CASTG	2 cut(s)	823, 859
VpaK11BI	GGWCC	4 cut(s)	12, 102, 238, 502
XapI	RAATTY	2 cut(s)	420, 821
XbaI	TCTAGA	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaI	CCCGGG	2 cut(s)	134, 366
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.