Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Forward (+)

26171818 .. 26174776

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTCGCAGACTAACGATGCCAACCTTGACGGTGAAGCTCACGACATTAACAGGTCAGACCACAGAGATGAGGTGGAGGATGAAGATTACAAGTCTCAACCTCATACTGGCGACGGAGCCAGTCCTGGGAAAATCTTTATAGGGGGTTTGGCCAGAGAGACAACTACAGCGCAATTTATAAAGCATTTCGGCAAATACGGTGAAATTATAGATTCAGTGATAATGAAGGACCGGAAAACAGGGCAGCCCCGTGGGTTCGGTTTTGTGACCTATGCAGACCCCTCTGTCGTTGATAAAGTCATTGACGAAACTCATGTTATCAATGGCAAACAAGTGGAAATCAAGCGCACAATACCGAGGGGAGCAATGGGGTCTAAGGATTTCAAGACTAAGAAGATTTTCGTGGGTGGAATTCCAACAACCGTGAATGAAGATGAGTTTAGTGACTTCTTTTCACAGTTTGGAGAGGTCAAGGAGCATCAGATTATGCGAGACCACTCCACCGGTCGCTCCCGTGGCTTTGGATTTATTACCTTTGACACAGAGCAATCAGTTGACGAACTCTTGGACAAGGGGAACAAGCTTGAGTTCGCTGGAGCTCAGGTGGAGATTAAAAAGGCAGAGCCAAAGAAGCCAAACCTACCTGCAGCCCCATCTAAACGTTACAGCGATTCTCGGCCTGCATATGGTGGTGGGTACGGAGATAGCTATGGGGGATTTGGAGGTGGCGGTTATGGTGCTGCAGGTGGTTATAGGTCAACTGCGGCCTATGGTGGTAGGGGAGGCAGTGCATATGGAGGATATAGTGGAAATGAATTTGGCGGCTATGGAGTATATGGAGGCGGTGGTGGTGGTGGGGGTATAGGGGCGTATAGGGGAGAATCATCCATAGGATACTCGGGCCGTTATGGAGGAGCCTATAGCAGAGGTTATGATCTAGGAGGCGGTTATGGTGGAGCTGGTGAGAGTTATGGGGGATATGGAAGTGCTGGTGGTGCAGCTGGTGGTGGTTACGGGAGTGGTTATGATGCAGGTTTTGGAGGTGGCTACGGAGGTGGTAGTGGAGCTTCCTTTTATGGTAGTAGAGGGGGATATGGTGGTACAGGTAGCGGTCGATATCATCCATATGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009607 GO:0009719 GO:0009987 GO:0010467 GO:0010494 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071216 GO:0071495 GO:0071704 GO:0072396 GO:0072402 GO:0072423 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

380

Amino Acids

39.32

Weight (kDa)

6.1

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AarI	CACCTGC	1 cut(s)	737
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc36I	ACCTGC	3 cut(s)	655, 737, 1025
AciI	CCGC	6 cut(s)	732, 767, 825, 846, 948, 1113
AclI	AACGTT	1 cut(s)	664
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	414, 818
AfaI	GTAC	2 cut(s)	701, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	110, 129, 689
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	7 cut(s)	41, 586, 602, 711, 962, 1004, 1070
AluI	AGCT	7 cut(s)	41, 586, 602, 711, 962, 1004, 1070
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	3 cut(s)	102, 155, 489
Ama87I	CYCGRG	1 cut(s)	901
AoxI	GGCC	4 cut(s)	153, 680, 768, 904
ApeKI	GCWGC	4 cut(s)	247, 650, 743, 1001
ApoI	RAATTY	2 cut(s)	414, 818
AsiGI	ACCGGT	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	2 cut(s)	175, 351
AspS9I	GGNCC	2 cut(s)	232, 904
AsuHPI	GGTGA	3 cut(s)	47, 215, 977
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	604
BarI	GAAGNNNNNNTAC	2 cut(s)	1054, 1086
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	4 cut(s)	259, 662, 730, 1013
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	890
BcoDI	GTCTC	3 cut(s)	102, 155, 489
BfaI	CTAG	1 cut(s)	941
BfmI	CTRYAG	4 cut(s)	168, 648, 744, 922
BfuAI	ACCTGC	3 cut(s)	655, 737, 1025
BfuI	GTATCC	1 cut(s)	890
BisI	GCNGC	6 cut(s)	248, 651, 744, 768, 826, 1002
BlsI	GCNGC	6 cut(s)	249, 652, 745, 769, 827, 1003
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	901
BmgT120I	GGNCC	2 cut(s)	232, 904
BmiI	GGNNCC	2 cut(s)	121, 919
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	10, 490, 1021
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	4 cut(s)	128, 253, 359, 517
BsaWI	WCCGGW	2 cut(s)	234, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 129, 689
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	115, 123
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	4 cut(s)	128, 253, 359, 517
BseGI	GGATG	3 cut(s)	88, 887, 1123
BseLI	CCNNNNNNNGG	3 cut(s)	110, 129, 689
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	115, 123
BseRI	GAGGAG	1 cut(s)	930
BseXI	GCAGC	4 cut(s)	259, 662, 730, 1013
BsgI	GTGCAG	1 cut(s)	1020
Bsh1285I	CGRYCG	2 cut(s)	511, 1117
BshFI	GGCC	4 cut(s)	155, 682, 770, 906
BshTI	ACCGGT	1 cut(s)	506
BsiEI	CGRYCG	2 cut(s)	511, 1117
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	235, 507
BslI	CCNNNNNNNGG	3 cut(s)	110, 129, 689
BsmAI	GTCTC	3 cut(s)	102, 155, 489
BsnI	GGCC	4 cut(s)	155, 682, 770, 906
Bso31I	GGTCTC	1 cut(s)	489
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	937
BspACI	CCGC	6 cut(s)	732, 767, 825, 846, 948, 1113
BspANI	GGCC	4 cut(s)	155, 682, 770, 906
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	121, 919
BspMAI	CTGCAG	2 cut(s)	652, 748
BspMI	ACCTGC	3 cut(s)	655, 737, 1025
BspTNI	GGTCTC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	2 cut(s)	115, 123
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	128, 253, 359, 517
BssMI	GATC	1 cut(s)	937
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	4 cut(s)	35, 203, 427, 462
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	378, 393, 603
BstDSI	CCRYGG	2 cut(s)	253, 517
BstF5I	GGATG	3 cut(s)	88, 887, 1123
BstHHI	GCGC	2 cut(s)	175, 351
BstKTI	GATC	1 cut(s)	940
BstMAI	GTCTC	3 cut(s)	102, 155, 489
BstMBI	GATC	1 cut(s)	937
BstMCI	CGRYCG	2 cut(s)	511, 1117
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 634, 998
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	4 cut(s)	168, 648, 744, 922
BstV1I	GCAGC	4 cut(s)	259, 662, 730, 1013
BsuI	GTATCC	1 cut(s)	890
BsuRI	GGCC	4 cut(s)	155, 682, 770, 906
BtgI	CCRYGG	2 cut(s)	253, 517
BtsCI	GGATG	3 cut(s)	88, 887, 1123
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	2 cut(s)	225, 796
BveI	ACCTGC	3 cut(s)	655, 737, 1025
Cac8I	GCNNGC	1 cut(s)	684
CfoI	GCGC	2 cut(s)	175, 351
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	232, 904
Csp6I	GTAC	2 cut(s)	700, 1104
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	2 cut(s)	700, 1104
DdeI	CTNAG	3 cut(s)	378, 393, 603
DpnI	GATC	1 cut(s)	939
DpnII	GATC	1 cut(s)	937
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	1121
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	901
EcoICRI	GAGCTC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	1121
EcoT38I	GRGCYC	1 cut(s)	604
FaeI	CATG	1 cut(s)	320
FatI	CATG	1 cut(s)	316
FauNDI	CATATG	3 cut(s)	688, 796, 1129
Fnu4HI	GCNGC	6 cut(s)	248, 651, 744, 768, 826, 1002
FokI	GGATG	3 cut(s)	95, 874, 1110
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	6 cut(s)	248, 651, 744, 768, 826, 1002
FspBI	CTAG	1 cut(s)	941
GlaI	GCGC	2 cut(s)	174, 350
GluI	GCNGC	6 cut(s)	248, 651, 744, 768, 826, 1002
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	4 cut(s)	155, 682, 770, 906
HapII	CCGG	2 cut(s)	235, 507
HhaI	GCGC	2 cut(s)	175, 351
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	173, 349
HinP1I	GCGC	2 cut(s)	173, 349
HincII	GTYRAC	2 cut(s)	559, 762
HindII	GTYRAC	2 cut(s)	559, 762
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	5, 215, 674, 884
HpaII	CCGG	2 cut(s)	235, 507
HphI	GGTGA	3 cut(s)	47, 215, 977
Hpy166II	GTNNAC	2 cut(s)	559, 762
Hpy188I	TCNGA	2 cut(s)	61, 486
Hpy188III	TCNNGA	2 cut(s)	44, 388
Hpy8I	GTNNAC	2 cut(s)	559, 762
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	4 cut(s)	35, 203, 427, 462
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	7 cut(s)	278, 650, 686, 746, 794, 1001, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 634, 998
HpyF3I	CTNAG	3 cut(s)	378, 393, 603
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	2 cut(s)	173, 349
Kzo9I	GATC	1 cut(s)	937
LmnI	GCTCC	8 cut(s)	119, 365, 478, 518, 599, 917, 959, 1067
Lsp1109I	GCAGC	4 cut(s)	259, 662, 730, 1013
LweI	GCATC	3 cut(s)	10, 490, 1021
MaeI	CTAG	1 cut(s)	941
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	4 cut(s)	268, 446, 665, 1013
MalI	GATC	1 cut(s)	939
MboI	GATC	1 cut(s)	937
MboII	GAAGA	3 cut(s)	98, 409, 446
MhlI	GDGCHC	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	4 cut(s)	176, 207, 414, 818
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	443
Mox20I	TGGCCA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	2 cut(s)	51, 615
MslI	CAYNNNNRTG	2 cut(s)	69, 1128
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	1004
MspI	CCGG	2 cut(s)	235, 507
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	519, 634, 998
NdeI	CATATG	3 cut(s)	688, 796, 1129
NdeII	GATC	1 cut(s)	937
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	2 cut(s)	121, 919
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	268, 446
PaqCI	CACCTGC	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	4 cut(s)	5, 215, 674, 884
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	6 cut(s)	249, 652, 745, 769, 827, 1003
PsiI	TTATAA	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	604
Psp1406I	AACGTT	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	121, 919
PspPI	GGNCC	2 cut(s)	232, 904
PstI	CTGCAG	2 cut(s)	652, 748
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	2 cut(s)	701, 1105
RsaNI	GTAC	2 cut(s)	700, 1104
RseI	CAYNNNNRTG	2 cut(s)	69, 1128
SacI	GAGCTC	1 cut(s)	604
SaqAI	TTAA	2 cut(s)	51, 615
SatI	GCNGC	6 cut(s)	248, 651, 744, 768, 826, 1002
Sau3AI	GATC	1 cut(s)	937
Sau96I	GGNCC	2 cut(s)	232, 904
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	3 cut(s)	10, 490, 1021
SfcI	CTRYAG	4 cut(s)	168, 648, 744, 922
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	69, 1128
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	176, 207, 414, 818
SsiI	CCGC	6 cut(s)	732, 767, 825, 846, 948, 1113
SspMI	CTAG	1 cut(s)	941
SstI	GAGCTC	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	35, 203, 427, 462
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	1117
TasI	AATT	4 cut(s)	176, 207, 414, 818
TauI	GCSGC	2 cut(s)	770, 828
TfiI	GAWTC	4 cut(s)	5, 215, 674, 884
Tru1I	TTAA	2 cut(s)	51, 615
Tru9I	TTAA	2 cut(s)	51, 615
TscAI	CASTG	2 cut(s)	225, 796
TseFI	GTSAC	2 cut(s)	268, 446
TseI	GCWGC	4 cut(s)	247, 650, 743, 1001
Tsp45I	GTSAC	2 cut(s)	268, 446
TspDTI	ATGAA	4 cut(s)	99, 242, 447, 831
TspGWI	ACGGA	3 cut(s)	132, 717, 1068
TspRI	CASTG	2 cut(s)	225, 796
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	414, 818
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.