Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Reverse (-)

1257785 .. 1259951

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATTCGCATACCGGCGACCCCAACCTCGACGGCGAAGCTCACGACATTAACGGGCCAGACCACCGACACGAGCCGGCGGAGGATGACGACTACAGCAGGTCCCAGCCTCACACTGGCGACGGCGCCAGTCCCGGGAAAATCTTTATAGGGGGTCTGGCAAGAGAGACTACCACAGCGCAATTTATAAAGCATTTTGGTGCGTACGGTGAGATTATAGATTCGGTGATAATGAAGGACCGGAAGACGGGGCAACCCCGTGGTTTCGGGTTTGTGACGTACGCAGACCCTTCTGTGGTTGATAAAGTCATTGAGGATGCTCATGTTATCAATGGCAAACAAGTCGAAATCAAGCGAACAATACCCCGGGGAGCAATGGGTTCTAAGGATTTCAAGACCAAGAAGATTTTTGTGGGTGGAATTCCAACAACTGTAAATGAAGAGGAGTTTAGCGACTTCTTTTCACAGTACGGAGAGGTCAAGGAACATCAGATTATGCGGGACCACTCCACCGGTCGCTCCCGTGGATTTGGATTTGTTACCTTTGACACAGAGCAAGCAGTGGATGAACTCTTGGACAAGGGGAACAAGCTTGAGTTTGCTGGAGCTCAGGTGGAGATAAAAAAGGCGGAGCCAAAGAAGCCAAACCAACCTGCACCACCATCGAAACGTTATAATGATTCTAGACCTGCATATGGTGGTGGGTATGGAGAAAGCTATGGTGGATTTGGAGGTAGCAGTTATGGTGGTGCTGGTGGTTATAGGTCAGCTGCTGCTTATGGTGGTAGAGGCAGTGCTTATGGAGGATATGGTGGCGGTGAATTTGGCGGATATGGAGTATATGGTGGCGGCGGCGGTATAGGGGCTTATAGGGGAGAATCTTCCATAGGATATTCAGGCCGTTATGGAGGAGCCTATAGCAGGGGTTACGATATGGGAGGTGGTTATGTTGGAGCTGGTGAGAGTTATGGGGGATATGGAGGTGCTGGCGGGGCAGCAGCTGGTGGTGGTGGTTATGGGAGTGGCTACGATGCAGGTTTTGGAGGTGGTTACGGGGGTGGCTATGGAGGTGGTAGTGGAGCTTCCTTTTACGGTAGTAGAGGAGGGGGATATGGCGGTGCAGGTAGTGGCCGATATCATCCATATGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009607 GO:0009719 GO:0009987 GO:0010467 GO:0010494 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071216 GO:0071495 GO:0071704 GO:0072396 GO:0072402 GO:0072423 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

385

Amino Acids

39.62

Weight (kDa)

6.08

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	188, 675
Acc36I	ACCTGC	5 cut(s)	90, 661, 697, 1025, 1112
AccB1I	GGYRCC	1 cut(s)	125
AclI	AACGTT	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	1129
AcsI	RAATTY	2 cut(s)	420, 821
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	206, 281, 470
AfiI	CCNNNNNNNGG	6 cut(s)	116, 135, 247, 295, 695, 921
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	8 cut(s)	41, 592, 608, 717, 770, 956, 1001, 1082
AluI	AGCT	8 cut(s)	41, 592, 608, 717, 770, 956, 1001, 1082
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	161
AlwNI	CAGNNNCTG	2 cut(s)	773, 1001
Ama87I	CYCGRG	2 cut(s)	134, 366
AoxI	GGCC	3 cut(s)	56, 898, 1129
ApeKI	GCWGC	4 cut(s)	770, 773, 995, 998
ApoI	RAATTY	2 cut(s)	420, 821
AsiGI	ACCGGT	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	128, 181
AspS9I	GGNCC	4 cut(s)	56, 102, 238, 502
AsuC2I	CCSGG	4 cut(s)	135, 136, 367, 368
AsuHPI	GGTGA	4 cut(s)	221, 238, 830, 971
AvaI	CYCGRG	2 cut(s)	134, 366
AvaII	GGWCC	3 cut(s)	102, 238, 502
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	1066, 1098
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	757, 760, 1007, 1010
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	3 cut(s)	49, 139, 885
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 645, 679
BcnI	CCSGG	4 cut(s)	135, 136, 367, 368
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	2 cut(s)	94, 916
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	5 cut(s)	90, 661, 697, 1025, 1112
BisI	GCNGC	6 cut(s)	771, 774, 850, 853, 996, 999
BlsI	GCNGC	6 cut(s)	772, 775, 851, 854, 997, 1000
Bme1390I	CCNGG	4 cut(s)	135, 136, 367, 368
Bme18I	GGWCC	3 cut(s)	102, 238, 502
BmeT110I	CYCGRG	2 cut(s)	134, 366
BmgT120I	GGNCC	4 cut(s)	56, 102, 238, 502
BmiI	GGNNCC	5 cut(s)	104, 127, 503, 633, 913
BmrFI	CCNGG	4 cut(s)	135, 136, 367, 368
BmsI	GCATC	2 cut(s)	307, 1021
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	4 cut(s)	135, 136, 367, 368
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	6 cut(s)	134, 259, 365, 366, 367, 523
BsaWI	WCCGGW	2 cut(s)	240, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 135, 247, 295, 695, 921
Bse118I	RCCGGY	3 cut(s)	14, 76, 512
Bse1I	ACTGG	2 cut(s)	121, 129
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	6 cut(s)	134, 259, 365, 366, 367, 523
BseGI	GGATG	4 cut(s)	91, 322, 571, 1138
BseLI	CCNNNNNNNGG	6 cut(s)	116, 135, 247, 295, 695, 921
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	2 cut(s)	121, 129
BseRI	GAGGAG	3 cut(s)	458, 924, 1116
BseXI	GCAGC	4 cut(s)	757, 760, 1007, 1010
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	2 cut(s)	639, 1140
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	3 cut(s)	58, 900, 1131
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	134, 366
BsiSI	CCGG	6 cut(s)	15, 77, 135, 241, 367, 513
BsiWI	CGTACG	2 cut(s)	204, 279
BslFI	GGGAC	3 cut(s)	88, 117, 515
BslI	CCNNNNNNNGG	6 cut(s)	116, 135, 247, 295, 695, 921
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	88, 117, 515
BsnI	GGCC	3 cut(s)	58, 900, 1131
BsoBI	CYCGRG	2 cut(s)	134, 366
Bsp1286I	GDGCHC	1 cut(s)	610
BspANI	GGCC	3 cut(s)	58, 900, 1131
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	5 cut(s)	104, 127, 503, 633, 913
BspMI	ACCTGC	5 cut(s)	90, 661, 697, 1025, 1112
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	3 cut(s)	14, 76, 512
BsrI	ACTGG	2 cut(s)	121, 129
BssAI	RCCGGY	3 cut(s)	14, 76, 512
BssECI	CCNNGG	6 cut(s)	134, 259, 365, 366, 367, 523
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	4 cut(s)	209, 433, 468, 1094
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	78, 558, 988
BstDEI	CTNAG	2 cut(s)	384, 609
BstDSI	CCRYGG	2 cut(s)	259, 523
BstENI	CCTNNNNNAGG	1 cut(s)	919
BstF5I	GGATG	4 cut(s)	91, 322, 571, 1138
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 181
BstMAI	GTCTC	1 cut(s)	161
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 992
BstSCI	CCNGG	4 cut(s)	133, 134, 365, 366
BstSFI	CTRYAG	2 cut(s)	94, 916
BstV1I	GCAGC	4 cut(s)	757, 760, 1007, 1010
BstV2I	GAAGAC	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	58, 900, 1131
BtgI	CCRYGG	2 cut(s)	259, 523
BtsCI	GGATG	4 cut(s)	91, 322, 571, 1138
BtsI	GCAGTG	2 cut(s)	567, 799
BtsIMutI	CAGTG	3 cut(s)	114, 567, 799
BveI	ACCTGC	5 cut(s)	90, 661, 697, 1025, 1112
Cac8I	GCNNGC	3 cut(s)	78, 558, 988
CaiI	CAGNNNCTG	2 cut(s)	773, 1001
CfoI	GCGC	2 cut(s)	128, 181
Cfr10I	RCCGGY	3 cut(s)	14, 76, 512
Cfr13I	GGNCC	4 cut(s)	56, 102, 238, 502
Cfr9I	CCCGGG	2 cut(s)	134, 366
Csp6I	GTAC	3 cut(s)	205, 280, 469
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	3 cut(s)	205, 280, 469
DdeI	CTNAG	2 cut(s)	384, 609
DinI	GGCGCC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	1129
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	3 cut(s)	95, 644, 843
Ecl136II	GAGCTC	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	1136
Eco47I	GGWCC	3 cut(s)	102, 238, 502
Eco53kI	GAGCTC	1 cut(s)	608
Eco88I	CYCGRG	2 cut(s)	134, 366
EcoICRI	GAGCTC	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	919
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	1136
EcoT38I	GRGCYC	1 cut(s)	610
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	1 cut(s)	326
FaqI	GGGAC	3 cut(s)	88, 117, 515
FatI	CATG	1 cut(s)	322
FauI	CCCGC	2 cut(s)	492, 983
FauNDI	CATATG	2 cut(s)	694, 1144
Fnu4HI	GCNGC	6 cut(s)	771, 774, 850, 853, 996, 999
FokI	GGATG	4 cut(s)	98, 329, 578, 1125
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	6 cut(s)	771, 774, 850, 853, 996, 999
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	2 cut(s)	127, 180
GluI	GCNGC	6 cut(s)	771, 774, 850, 853, 996, 999
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	58, 900, 1131
HapII	CCGG	6 cut(s)	15, 77, 135, 241, 367, 513
HhaI	GCGC	2 cut(s)	128, 181
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	2 cut(s)	126, 179
HinP1I	GCGC	2 cut(s)	126, 179
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	5, 221, 680, 878
HpaII	CCGG	6 cut(s)	15, 77, 135, 241, 367, 513
HphI	GGTGA	4 cut(s)	221, 238, 830, 971
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	3 cut(s)	44, 394, 684
Hpy99I	CGWCG	2 cut(s)	35, 125
HpyAV	CCTTC	2 cut(s)	229, 300
HpyCH4III	ACNGT	4 cut(s)	209, 433, 468, 1094
HpyCH4IV	ACGT	2 cut(s)	278, 670
HpyCH4V	TGCA	4 cut(s)	656, 692, 1034, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 992
HpyF3I	CTNAG	2 cut(s)	384, 609
HpySE526I	ACGT	2 cut(s)	278, 670
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	2 cut(s)	126, 179
KasI	GGCGCC	1 cut(s)	125
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LmnI	GCTCC	7 cut(s)	371, 524, 605, 631, 911, 953, 1079
Lsp1109I	GCAGC	4 cut(s)	757, 760, 1007, 1010
LweI	GCATC	2 cut(s)	307, 1021
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	2 cut(s)	278, 670
MaeIII	GTNAC	4 cut(s)	274, 538, 926, 1049
MboII	GAAGA	4 cut(s)	256, 415, 452, 873
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	3 cut(s)	182, 420, 821
Mly113I	GGCGCC	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	449, 931
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	198, 1143
MspA1I	CMGCKG	2 cut(s)	770, 1001
MspI	CCGG	6 cut(s)	15, 77, 135, 241, 367, 513
MspR9I	CCNGG	4 cut(s)	135, 136, 367, 368
MwoI	GCNNNNNNNGC	2 cut(s)	640, 992
NaeI	GCCGGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	4 cut(s)	135, 136, 367, 368
NdeI	CATATG	2 cut(s)	694, 1144
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	5 cut(s)	104, 127, 503, 633, 913
NmuCI	GTSAC	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	5, 221, 680, 878
Pfl23II	CGTACG	2 cut(s)	204, 279
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	772, 775, 851, 854, 997, 1000
PluTI	GGCGCC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	102
PsiI	TTATAA	2 cut(s)	188, 675
Psp124BI	GAGCTC	1 cut(s)	610
Psp1406I	AACGTT	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	105
PspLI	CGTACG	2 cut(s)	204, 279
PspN4I	GGNNCC	5 cut(s)	104, 127, 503, 633, 913
PspPI	GGNCC	4 cut(s)	56, 102, 238, 502
PspPPI	RGGWCCY	1 cut(s)	102
PstNI	CAGNNNCTG	2 cut(s)	773, 1001
PvuII	CAGCTG	2 cut(s)	770, 1001
RsaI	GTAC	3 cut(s)	206, 281, 470
RsaNI	GTAC	3 cut(s)	205, 280, 469
RseI	CAYNNNNRTG	2 cut(s)	198, 1143
SacI	GAGCTC	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	6 cut(s)	771, 774, 850, 853, 996, 999
Sau96I	GGNCC	4 cut(s)	56, 102, 238, 502
ScrFI	CCNGG	4 cut(s)	135, 136, 367, 368
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	2 cut(s)	307, 1021
SfcI	CTRYAG	2 cut(s)	94, 916
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	3 cut(s)	102, 238, 502
SmaI	CCCGGG	2 cut(s)	136, 368
SmiMI	CAYNNNNRTG	2 cut(s)	198, 1143
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	182, 420, 821
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	4 cut(s)	133, 134, 365, 366
TaaI	ACNGT	4 cut(s)	209, 433, 468, 1094
TaiI	ACGT	2 cut(s)	281, 673
TaqI	TCGA	3 cut(s)	30, 345, 665
TasI	AATT	3 cut(s)	182, 420, 821
TauI	GCSGC	2 cut(s)	852, 855
TfiI	GAWTC	4 cut(s)	5, 221, 680, 878
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	3 cut(s)	121, 567, 799
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	770, 773, 995, 998
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	248, 453, 582
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	2 cut(s)	134, 366
TspRI	CASTG	3 cut(s)	121, 567, 799
VpaK11BI	GGWCC	3 cut(s)	102, 238, 502
XagI	CCTNNNNNAGG	1 cut(s)	919
XapI	RAATTY	2 cut(s)	420, 821
XbaI	TCTAGA	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaI	CCCGGG	2 cut(s)	134, 366
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.