Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000258.1

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 5333

Gene Structure 5296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

atggattcgcatactaacgatgccaaccttgacggggaagctcacgacgttgaccggccagaccacagaggcggaggtgaggcggaggacgaagactacaagtcgtcgtctcagcctcacaccggcgacggagccagccccgggaaaatctttatagggggtttggcgagagagaccactacagctcaatttgtgaagcattttggtaaatatggggagattatagattcggtgataatgaaggatcggaaaacagggcagccaaggggctttgggtttgtgacctatgctaacccctctgtggttgatactgtcatagaagagactcatgttatcaatggcaagcaagtggaaatcaagaggacaatacccaggggagcaatggggtcgaaggatttcaagacgaagaagatttttgtgggtggaattcccacaacagtgaatgaagatgagtttagcgacttcttttcacagtttggagaggtcaaggaacatcagattatgcgggaccattccactggtcgctcgcggggatttggatttgttacctttgagacagagcaagcagttgatgatctcttggacaaggggaacaagcttgagttcgccggagctcaggtggagataaaaaaggcagagccaaagaagcaaaccctacccccacccccatcaaaacgttacaatgattctaggcctgcatatggtggtggatatggagatagttatggtggatttggaggtggaggctatggtagtgcaggtgcttataggacaaccgcagcagcctatgctggtagaggcagtgcttatggaggatatagtggaagtgagtttggtggatacggagtatatggcggcggcggcggcggcggcggtataggggcttataggggagaatcctcagttggaggctacgcaggccgttatgcaggagcctatagcagaggttatgatctaggaggtggtggtggttatggtggaacaggtggtgagagttatgggggatatggaagtgctggtggtggagctggcggtggttacgggagtgggagtggctatgacacaggttttggaggtggctatggaggtggcggtggagcttccttttatggtagtagagggggatatggtggtgctggtagtgtatcagccacagagggagaaccagagctcgagacaatggcaatggtctccttgaacctccgcactggcccaaatccaaagctgcttcaagtctgttgcagaaagaaggagaggagcagagataactatgacccctacaaagtcgtcgaaattacgcctccgcccaagaacctcggcgttcgttgctttccctctaacatgcaatgcggggagattgtgacaatagaaagccaaacttacacaatctcggctgtaactcataggtaccagcttcggaaggggaagtatgaaccgagcgagaagaggctcgatgtcttgtccacagcgagatacgttttgaatatatacttggataatttactagaacaatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009607 GO:0009719 GO:0009987 GO:0010467 GO:0010494 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071216 GO:0071495 GO:0071704 GO:0072396 GO:0072402 GO:0072423 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

505

Amino Acids

53.12

Weight (kDa)

6.2

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	749
Acc65I	GGTACC	1 cut(s)	1407
AccB1I	GGYRCC	1 cut(s)	1407
AccII	CGCG	1 cut(s)	529
AclI	AACGTT	1 cut(s)	676
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	1409
AfiI	CCNNNNNNNGG	5 cut(s)	34, 122, 141, 301, 701
AgsI	TTSAA	4 cut(s)	400, 1198, 1232, 1483
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	4 cut(s)	888, 920, 1475, 1507
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	9 cut(s)	41, 185, 598, 614, 1028, 1100, 1171, 1225, 1414
AluI	AGCT	9 cut(s)	41, 185, 598, 614, 1028, 1100, 1171, 1225, 1414
Alw21I	GWGCWC	2 cut(s)	616, 1173
Alw26I	GTCTC	6 cut(s)	114, 167, 317, 548, 1169, 1195
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	2 cut(s)	140, 1172
AoxI	GGCC	4 cut(s)	56, 692, 919, 1210
ApeKI	GCWGC	4 cut(s)	259, 779, 782, 1225
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
Asp700I	GAANNNNTTC	1 cut(s)	395
Asp718I	GGTACC	1 cut(s)	1407
AspS9I	GGNCC	2 cut(s)	508, 1211
AsuC2I	CCSGG	2 cut(s)	141, 142
AsuHPI	GGTGA	3 cut(s)	89, 244, 1001
AvaI	CYCGRG	2 cut(s)	140, 1172
AvaII	GGWCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	1407
BanII	GRGCYC	2 cut(s)	616, 1173
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	616, 1173
BbvI	GCAGC	4 cut(s)	271, 791, 794, 1212
BccI	CCATC	1 cut(s)	676
BceAI	ACGGC	1 cut(s)	906
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	833
BcnI	CCSGG	2 cut(s)	141, 142
BcoDI	GTCTC	6 cut(s)	114, 167, 317, 548, 1169, 1195
BfaI	CTAG	3 cut(s)	690, 956, 1505
BfmI	CTRYAG	2 cut(s)	180, 937
BfuAI	ACCTGC	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	833
Bme1390I	CCNGG	3 cut(s)	141, 142, 373
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	140, 1172
BmgT120I	GGNCC	2 cut(s)	508, 1211
BmiI	GGNNCC	4 cut(s)	133, 509, 934, 1409
BmrFI	CCNGG	3 cut(s)	141, 142, 373
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	141, 142
BsaI	GGTCTC	2 cut(s)	167, 1195
BsaJI	CCNNGG	6 cut(s)	139, 140, 263, 371, 372, 1315
BsaXI	ACNNNNNCTCC	4 cut(s)	603, 633, 1036, 1066
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 122, 141, 301, 701
Bse118I	RCCGGY	2 cut(s)	54, 122
Bse1I	ACTGG	2 cut(s)	523, 1213
Bse3DI	GCAATG	3 cut(s)	387, 1191, 1352
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	6 cut(s)	139, 140, 263, 371, 372, 1315
BseLI	CCNNNNNNNGG	5 cut(s)	34, 122, 141, 301, 701
BseMI	GCAATG	3 cut(s)	387, 1191, 1352
BseMII	CTCAG	3 cut(s)	125, 629, 915
BseNI	ACTGG	2 cut(s)	523, 1213
BseRI	GAGGAG	1 cut(s)	1270
BseXI	GCAGC	4 cut(s)	271, 791, 794, 1212
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	4 cut(s)	58, 694, 921, 1212
BshNI	GGYRCC	1 cut(s)	1407
BsiHKAI	GWGCWC	2 cut(s)	616, 1173
BsiHKCI	CYCGRG	2 cut(s)	140, 1172
BsiSI	CCGG	4 cut(s)	55, 123, 141, 609
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	5 cut(s)	34, 122, 141, 301, 701
BsmAI	GTCTC	6 cut(s)	114, 167, 317, 548, 1169, 1195
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	4 cut(s)	58, 694, 921, 1212
Bso31I	GGTCTC	2 cut(s)	167, 1195
BsoBI	CYCGRG	2 cut(s)	140, 1172
Bsp1286I	GDGCHC	2 cut(s)	616, 1173
Bsp143I	GATC	3 cut(s)	244, 574, 952
BspANI	GGCC	4 cut(s)	58, 694, 921, 1212
BspCNI	CTCAG	3 cut(s)	124, 628, 914
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	4 cut(s)	133, 509, 934, 1409
BspMI	ACCTGC	1 cut(s)	749
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	1407
BspTNI	GGTCTC	2 cut(s)	167, 1195
BsrDI	GCAATG	3 cut(s)	387, 1191, 1352
BsrFI	RCCGGY	2 cut(s)	54, 122
BsrI	ACTGG	2 cut(s)	523, 1213
BssAI	RCCGGY	2 cut(s)	54, 122
BssECI	CCNNGG	6 cut(s)	139, 140, 263, 371, 372, 1315
BssMI	GATC	3 cut(s)	244, 574, 952
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	3 cut(s)	313, 439, 474
Bst6I	CTCTTC	2 cut(s)	315, 1439
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	7 cut(s)	136, 344, 527, 564, 696, 919, 1030
BstDEI	CTNAG	3 cut(s)	111, 615, 901
BstFNI	CGCG	1 cut(s)	529
BstKTI	GATC	3 cut(s)	247, 577, 955
BstMAI	GTCTC	6 cut(s)	114, 167, 317, 548, 1169, 1195
BstMBI	GATC	3 cut(s)	244, 574, 952
BstMWI	GCNNNNNNNGC	8 cut(s)	646, 788, 861, 864, 867, 870, 918, 1326
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	1345
BstSCI	CCNGG	3 cut(s)	139, 140, 371
BstSFI	CTRYAG	2 cut(s)	180, 937
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	271, 791, 794, 1212
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	518
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	58, 694, 921, 1212
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	4 cut(s)	444, 516, 808, 1206
BveI	ACCTGC	1 cut(s)	749
Cac8I	GCNNGC	7 cut(s)	136, 344, 527, 564, 696, 919, 1030
Cfr10I	RCCGGY	2 cut(s)	54, 122
Cfr13I	GGNCC	2 cut(s)	508, 1211
Cfr9I	CCCGGG	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	1408
CviAII	CATG	2 cut(s)	329, 1342
CviQI	GTAC	1 cut(s)	1408
DdeI	CTNAG	3 cut(s)	111, 615, 901
DpnI	GATC	3 cut(s)	246, 576, 954
DpnII	GATC	3 cut(s)	244, 574, 952
DriI	GACNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	315, 1439
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	2 cut(s)	315, 1439
EciI	GGCGGA	3 cut(s)	87, 98, 1293
Ecl136II	GAGCTC	2 cut(s)	614, 1171
Eco130I	CCWWGG	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	694
Eco24I	GRGCYC	2 cut(s)	616, 1173
Eco31I	GGTCTC	2 cut(s)	167, 1195
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	2 cut(s)	614, 1171
Eco88I	CYCGRG	2 cut(s)	140, 1172
EcoICRI	GAGCTC	2 cut(s)	614, 1171
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	2 cut(s)	616, 1173
ErhI	CCWWGG	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	332, 1345
FalI	AAGNNNNNCTT	2 cut(s)	1363, 1395
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	328, 1341
FauI	CCCGC	3 cut(s)	498, 522, 1343
FauNDI	CATATG	1 cut(s)	700
FriOI	GRGCYC	2 cut(s)	616, 1173
FspBI	CTAG	3 cut(s)	690, 956, 1505
HaeIII	GGCC	4 cut(s)	58, 694, 921, 1212
HapII	CCGG	4 cut(s)	55, 123, 141, 609
Hin1II	CATG	2 cut(s)	332, 1345
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	5 cut(s)	5, 227, 325, 686, 896
HpaII	CCGG	4 cut(s)	55, 123, 141, 609
HphI	GGTGA	3 cut(s)	89, 244, 1001
Hpy166II	GTNNAC	2 cut(s)	52, 1464
Hpy188I	TCNGA	3 cut(s)	249, 498, 1419
Hpy188III	TCNNGA	4 cut(s)	44, 358, 400, 1174
Hpy8I	GTNNAC	2 cut(s)	52, 1464
Hpy99I	CGWCG	4 cut(s)	50, 109, 131, 1292
HpyAV	CCTTC	4 cut(s)	235, 385, 1243, 1414
HpyCH4III	ACNGT	3 cut(s)	313, 439, 474
HpyCH4IV	ACGT	3 cut(s)	48, 676, 1476
HpyCH4V	TGCA	5 cut(s)	698, 758, 929, 1242, 1345
HpyF10VI	GCNNNNNNNGC	8 cut(s)	646, 788, 861, 864, 867, 870, 918, 1326
HpyF3I	CTNAG	3 cut(s)	111, 615, 901
HpySE526I	ACGT	3 cut(s)	48, 676, 1476
Hsp92II	CATG	2 cut(s)	332, 1345
KpnI	GGTACC	1 cut(s)	1411
Kzo9I	GATC	3 cut(s)	244, 574, 952
LmnI	GCTCC	7 cut(s)	131, 377, 611, 932, 1025, 1097, 1257
Lsp1109I	GCAGC	4 cut(s)	271, 791, 794, 1212
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	690, 956, 1505
MaeII	ACGT	3 cut(s)	48, 676, 1476
MaeIII	GTNAC	6 cut(s)	280, 544, 677, 1037, 1360, 1396
MalI	GATC	3 cut(s)	246, 576, 954
MboI	GATC	3 cut(s)	244, 574, 952
MboII	GAAGA	6 cut(s)	104, 332, 418, 421, 458, 1456
MhlI	GDGCHC	2 cut(s)	616, 1173
MluCI	AATT	4 cut(s)	188, 426, 1293, 1498
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	1 cut(s)	1516
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	4 cut(s)	55, 123, 141, 609
MspR9I	CCNGG	3 cut(s)	141, 142, 373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	8 cut(s)	646, 788, 861, 864, 867, 870, 918, 1326
NciI	CCSGG	2 cut(s)	141, 142
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	244, 574, 952
NlaIII	CATG	2 cut(s)	332, 1345
NlaIV	GGNNCC	4 cut(s)	133, 509, 934, 1409
NmeAIII	GCCGAG	2 cut(s)	1296, 1370
NmuCI	GTSAC	2 cut(s)	280, 1360
NspI	RCATGY	1 cut(s)	1345
OliI	CACNNNNGTG	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	1172
PaqCI	CACCTGC	1 cut(s)	749
PasI	CCCWGGG	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	5, 227, 686, 896
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	2 cut(s)	616, 1173
Psp1406I	AACGTT	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	133, 509, 934, 1409
PspPI	GGNCC	2 cut(s)	508, 1211
RsaI	GTAC	1 cut(s)	1409
RsaNI	GTAC	1 cut(s)	1408
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	2 cut(s)	616, 1173
SaqAI	TTAA	1 cut(s)	1516
Sau3AI	GATC	3 cut(s)	244, 574, 952
Sau96I	GGNCC	2 cut(s)	508, 1211
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	141, 142, 373
SduI	GDGCHC	2 cut(s)	616, 1173
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	2 cut(s)	180, 937
Sfr274I	CTCGAG	1 cut(s)	1172
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	1172
SmaI	CCCGGG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	599, 1172
SmoI	CTYRAG	2 cut(s)	599, 1172
Sse9I	AATT	4 cut(s)	188, 426, 1293, 1498
SseBI	AGGCCT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	690, 956, 1505
SstI	GAGCTC	2 cut(s)	616, 1173
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	3 cut(s)	139, 140, 371
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	3 cut(s)	313, 439, 474
TaiI	ACGT	3 cut(s)	51, 679, 1479
TaqI	TCGA	4 cut(s)	389, 1173, 1290, 1452
TasI	AATT	4 cut(s)	188, 426, 1293, 1498
TauI	GCSGC	6 cut(s)	858, 861, 864, 867, 870, 873
TfiI	GAWTC	4 cut(s)	5, 227, 686, 896
Tru1I	TTAA	1 cut(s)	1516
Tru9I	TTAA	1 cut(s)	1516
TscAI	CASTG	4 cut(s)	444, 523, 808, 1213
TseFI	GTSAC	2 cut(s)	280, 1360
TseI	GCWGC	4 cut(s)	259, 779, 782, 1225
Tsp45I	GTSAC	2 cut(s)	280, 1360
TspDTI	ATGAA	3 cut(s)	254, 459, 1446
TspGWI	ACGGA	2 cut(s)	144, 858
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	4 cut(s)	444, 523, 808, 1213
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	1345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	1172
XmaI	CCCGGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	3 cut(s)	690, 956, 1505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.