Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009709

Physical Location & Seq

Genomic Coordinates Reverse (-)

1671096 .. 1673966

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1026800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTCGTCGCCTATTTTTTTTGTGTCGTCCGATTCTAGGTCTTCCTCTTCGCTCTCTGTACTTCCTCCTCTCAGAATTCGAAACCCTCATGGATTCGCATACCAACGACCCCAACCTCGACGGCGAAGCTCACGACATAAACGGGCCAGACCACCGACACGAGGCGGCGGAGGATGACGACTACAGCAGGTCCCAGCCTCACACTGGCGACGGCGCCAGTTCCGGGAAAATCTTTATAGGGGGTTTGGCAAGAAGGACTACTACAGCGGAATTTATTAAGCATTTTGGTGCGTACGGTGAGATTATAGATTCGGTGATAATGAAGGACCGGAAGATGGGGCAACCCCGTGGTTTCGGGTTTGTGACGTATGCAGACCCCTCTGTGGTTGATAAAGTCATTGAGGATGTTCATGTTATCAATGACAGACAAGTCGAAATCAAGCGAACAATACCCCGGGGAGCAATGGTTTCTAAGGATTTCAAGACTAAGAAGATTTTTGTGGGTGGAATTCCAACAACCGTAAATGAAGAGGAGTTTAGCGACTTCTTTTCACAGTACGGAGAGGTCAAGGAACACCAGATTATGCGGGACCACTCCACCGGGCGCTCACGTGGATTTGGATTTGTTACCTTCGACACAGAGCAAGCAGTGGATGAACTCTTGGACAAAGGGAACAAGCTTGAGTTTGCTGGAGCTCAGGTGGAGATAAAAAAGGCAGAACCAAAGAAGCCAAACCAACCTGCACCACCATCAAAACGTTATAATGATTCTAGACCTGCATATGGTGGTGGGTATGGAGAAAGCTATGGTGGATTTGGAGGTGGCAGTTATGGTGGTGCTGGTGGCTATAGGTCAGCTGATGCCTATGGTGGTAGAGGCAGTGCTTATGGAGGATATGGTGGCAGTGAATTTGGCGGATATGGAGTATATGGTGGCGGTGGTGGCGGCGGTATAGGGGCTTATAGGGGAGAATCTTCCATAGGATATTCAAGCCGTTATGGAGGAGCCTATAGCAGGGGTTATGATATGGGAGGTGGTTATGGTGGAGCTGGTGAGAGTTATGGGGGATATGGAGGTGCTGGCGGGGCAGCTGGTGGTGGTGGTGGCTATGGGAGTGGCTATGATGCAGGTTTTGGAGGTGGATACGGAGGTGGCTACGGAGGTGGTAGTGGAGCTTCCTTTTACGGTAGTAGAGGAGGGGGATATGGCGGTGCAGGTAGTGGCCGTTATCATCCATATGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009607 GO:0009719 GO:0009987 GO:0010467 GO:0010494 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071216 GO:0071495 GO:0071704 GO:0072396 GO:0072402 GO:0072423 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

417

Amino Acids

43.57

Weight (kDa)

6.23

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	78 - 138	2e-11	RNA recognition motif
RRM_7	PF16367	164 - 227	4e-08	RNA recognition motif
RRM_1	PF00076	166 - 234	2.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431 FvH4_6g51431
malus_domestica	MD09G1026800.v1.1 MD17G1026600.v1.1
prunus_persica	Prupe.3G292100_v2.0.a1 Prupe.3G292100_v2.0.a1
pyrus_communis	pycom111g02090 pycom17g02170
rosa_chinensis	RchiOBHm_Chr2g0173111
rosa_laevigata	RLG00000022159
rosa_multiflora	Rmu_ssc0000258.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079230
rosa_rugosa	Rorug02G0565300 Rorug02G0565400 Rorug02G0565400
rosa_samantha	Rh2AG645400 Rh2BG656100 Rh2CG621200 Rh2DG669500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AasI	GACNNNNNNGTC	1 cut(s)	431
Acc36I	ACCTGC	5 cut(s)	180, 751, 787, 1121, 1208
AccB1I	GGYRCC	1 cut(s)	215
AclI	AACGTT	1 cut(s)	760
AcoI	YGGCCR	1 cut(s)	1225
AcsI	RAATTY	4 cut(s)	77, 272, 510, 911
AcvI	CACGTG	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	3 cut(s)	62, 296, 560
AfiI	CCNNNNNNNGG	8 cut(s)	38, 163, 206, 225, 337, 385, 785, 1017
AgsI	TTSAA	2 cut(s)	484, 993
AluBI	AGCT	8 cut(s)	131, 682, 698, 807, 860, 1052, 1094, 1178
AluI	AGCT	8 cut(s)	131, 682, 698, 807, 860, 1052, 1094, 1178
Alw21I	GWGCWC	1 cut(s)	700
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	2 cut(s)	146, 1225
ApeKI	GCWGC	1 cut(s)	1091
ApoI	RAATTY	4 cut(s)	77, 272, 510, 911
AspLEI	GCGC	2 cut(s)	218, 609
AspS9I	GGNCC	4 cut(s)	146, 192, 328, 592
AsuC2I	CCSGG	4 cut(s)	226, 457, 458, 604
AsuHPI	GGTGA	3 cut(s)	311, 328, 1067
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	3 cut(s)	192, 328, 592
BaeI	ACNNNNGTAYC	2 cut(s)	1138, 1171
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	700
BarI	GAAGNNNNNNTAC	4 cut(s)	247, 279, 1162, 1194
BauI	CACGAG	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	1103
BccI	CCATC	2 cut(s)	331, 760
BceAI	ACGGC	4 cut(s)	139, 229, 981, 1212
BciVI	GTATCC	1 cut(s)	1139
BcnI	CCSGG	4 cut(s)	226, 457, 458, 604
BfaI	CTAG	2 cut(s)	38, 774
BfmI	CTRYAG	4 cut(s)	184, 264, 850, 1012
BfoI	RGCGCY	2 cut(s)	219, 610
BfuAI	ACCTGC	5 cut(s)	180, 751, 787, 1121, 1208
BfuI	GTATCC	1 cut(s)	1139
BisI	GCNGC	3 cut(s)	168, 949, 1092
BlsI	GCNGC	3 cut(s)	169, 950, 1093
Bme1390I	CCNGG	4 cut(s)	226, 457, 458, 604
Bme18I	GGWCC	3 cut(s)	192, 328, 592
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	4 cut(s)	146, 192, 328, 592
BmiI	GGNNCC	4 cut(s)	194, 217, 593, 1009
BmrFI	CCNGG	4 cut(s)	226, 457, 458, 604
BmsI	GCATC	2 cut(s)	853, 1117
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	4 cut(s)	226, 457, 458, 604
BsaAI	YACGTR	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	349, 455, 456, 457
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 687, 717
Bsc4I	CCNNNNNNNGG	8 cut(s)	38, 163, 206, 225, 337, 385, 785, 1017
Bse1I	ACTGG	2 cut(s)	211, 219
Bse3DI	GCAATG	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	349, 455, 456, 457
BseGI	GGATG	4 cut(s)	181, 412, 661, 1234
BseLI	CCNNNNNNNGG	8 cut(s)	38, 163, 206, 225, 337, 385, 785, 1017
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	87, 713
BseNI	ACTGG	2 cut(s)	211, 219
BseRI	GAGGAG	4 cut(s)	59, 548, 1020, 1212
BseXI	GCAGC	1 cut(s)	1103
BseYI	CCCAGC	1 cut(s)	195
BsgI	GTGCAG	2 cut(s)	729, 1236
BshFI	GGCC	2 cut(s)	148, 1227
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	700
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	4 cut(s)	225, 331, 457, 603
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	2 cut(s)	178, 605
BslI	CCNNNNNNNGG	8 cut(s)	38, 163, 206, 225, 337, 385, 785, 1017
BsmFI	GGGAC	2 cut(s)	178, 605
BsnI	GGCC	2 cut(s)	148, 1227
BsoBI	CYCGRG	1 cut(s)	456
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	700
BspANI	GGCC	2 cut(s)	148, 1227
BspCNI	CTCAG	2 cut(s)	86, 712
BspLI	GGNNCC	4 cut(s)	194, 217, 593, 1009
BspMI	ACCTGC	5 cut(s)	180, 751, 787, 1121, 1208
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	211, 219
BssECI	CCNNGG	4 cut(s)	349, 455, 456, 457
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst4CI	ACNGT	4 cut(s)	299, 523, 558, 1190
Bst6I	CTCTTC	2 cut(s)	54, 525
BstACI	GRCGYC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	648, 1084
BstDEI	CTNAG	4 cut(s)	73, 474, 489, 699
BstDSI	CCRYGG	1 cut(s)	349
BstENI	CCTNNNNNAGG	1 cut(s)	1015
BstF5I	GGATG	4 cut(s)	181, 412, 661, 1234
BstH2I	RGCGCY	2 cut(s)	219, 610
BstHHI	GCGC	2 cut(s)	218, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	945, 1088
BstSCI	CCNGG	4 cut(s)	224, 455, 456, 602
BstSFI	CTRYAG	4 cut(s)	184, 264, 850, 1012
BstV1I	GCAGC	1 cut(s)	1103
BstV2I	GAAGAC	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	1139
BsuRI	GGCC	2 cut(s)	148, 1227
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	4 cut(s)	181, 412, 661, 1234
BtsI	GCAGTG	3 cut(s)	657, 889, 913
BtsIMutI	CAGTG	4 cut(s)	204, 657, 889, 913
BveI	ACCTGC	5 cut(s)	180, 751, 787, 1121, 1208
Cac8I	GCNNGC	2 cut(s)	648, 1084
CfoI	GCGC	2 cut(s)	218, 609
Cfr13I	GGNCC	4 cut(s)	146, 192, 328, 592
Cfr9I	CCCGGG	1 cut(s)	456
Csp6I	GTAC	3 cut(s)	61, 295, 559
CviAII	CATG	2 cut(s)	91, 413
CviQI	GTAC	3 cut(s)	61, 295, 559
DdeI	CTNAG	4 cut(s)	73, 474, 489, 699
DinI	GGCGCC	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	1225
Eam1104I	CTCTTC	2 cut(s)	54, 525
EarI	CTCTTC	2 cut(s)	54, 525
EciI	GGCGGA	2 cut(s)	185, 933
Ecl136II	GAGCTC	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	3 cut(s)	192, 328, 592
Eco53kI	GAGCTC	1 cut(s)	698
Eco72I	CACGTG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	1015
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	2 cut(s)	77, 510
EcoT38I	GRGCYC	1 cut(s)	700
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
FaeI	CATG	2 cut(s)	94, 416
FaqI	GGGAC	2 cut(s)	178, 605
FatI	CATG	2 cut(s)	90, 412
FauI	CCCGC	2 cut(s)	582, 1079
FauNDI	CATATG	2 cut(s)	784, 1240
Fnu4HI	GCNGC	3 cut(s)	168, 949, 1092
FokI	GGATG	4 cut(s)	188, 419, 668, 1221
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	3 cut(s)	168, 949, 1092
FspBI	CTAG	2 cut(s)	38, 774
GlaI	GCGC	2 cut(s)	217, 608
GluI	GCNGC	3 cut(s)	168, 949, 1092
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	714
HaeII	RGCGCY	2 cut(s)	219, 610
HaeIII	GGCC	2 cut(s)	148, 1227
HapII	CCGG	4 cut(s)	225, 331, 457, 603
HhaI	GCGC	2 cut(s)	218, 609
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	94, 416
Hin6I	GCGC	2 cut(s)	216, 607
HinP1I	GCGC	2 cut(s)	216, 607
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	5 cut(s)	34, 95, 311, 770, 974
HpaII	CCGG	4 cut(s)	225, 331, 457, 603
HphI	GGTGA	3 cut(s)	311, 328, 1067
Hpy188I	TCNGA	2 cut(s)	33, 76
Hpy188III	TCNNGA	3 cut(s)	134, 484, 774
Hpy99I	CGWCG	3 cut(s)	12, 125, 215
HpyAV	CCTTC	3 cut(s)	249, 319, 643
HpyCH4III	ACNGT	4 cut(s)	299, 523, 558, 1190
HpyCH4IV	ACGT	3 cut(s)	368, 613, 760
HpyCH4V	TGCA	5 cut(s)	374, 746, 782, 1130, 1217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	945, 1088
HpyF3I	CTNAG	4 cut(s)	73, 474, 489, 699
HpySE526I	ACGT	3 cut(s)	368, 613, 760
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	94, 416
HspAI	GCGC	2 cut(s)	216, 607
KasI	GGCGCC	1 cut(s)	215
LmnI	GCTCC	5 cut(s)	461, 695, 1007, 1049, 1175
Lsp1109I	GCAGC	1 cut(s)	1103
LweI	GCATC	2 cut(s)	853, 1117
MaeI	CTAG	2 cut(s)	38, 774
MaeII	ACGT	3 cut(s)	368, 613, 760
MaeIII	GTNAC	2 cut(s)	364, 628
MboII	GAAGA	6 cut(s)	35, 41, 346, 505, 542, 969
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	4 cut(s)	77, 272, 510, 911
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	539
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	288, 1239
MspA1I	CMGCKG	3 cut(s)	269, 860, 1094
MspI	CCGG	4 cut(s)	225, 331, 457, 603
MspR9I	CCNGG	4 cut(s)	226, 457, 458, 604
MwoI	GCNNNNNNNGC	2 cut(s)	945, 1088
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	4 cut(s)	226, 457, 458, 604
NdeI	CATATG	2 cut(s)	784, 1240
NlaIII	CATG	2 cut(s)	94, 416
NlaIV	GGNNCC	4 cut(s)	194, 217, 593, 1009
NmuCI	GTSAC	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	81
PfeI	GAWTC	5 cut(s)	34, 95, 311, 770, 974
Pfl23II	CGTACG	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	169, 950, 1093
PluTI	GGCGCC	1 cut(s)	219
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
Ppu21I	YACGTR	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	760
Psp5II	RGGWCCY	1 cut(s)	192
PspCI	CACGTG	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	195
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	4 cut(s)	194, 217, 593, 1009
PspPI	GGNCC	4 cut(s)	146, 192, 328, 592
PspPPI	RGGWCCY	1 cut(s)	192
PvuII	CAGCTG	2 cut(s)	860, 1094
RsaI	GTAC	3 cut(s)	62, 296, 560
RsaNI	GTAC	3 cut(s)	61, 295, 559
RseI	CAYNNNNRTG	2 cut(s)	288, 1239
SacI	GAGCTC	1 cut(s)	700
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	168, 949, 1092
Sau96I	GGNCC	4 cut(s)	146, 192, 328, 592
ScrFI	CCNGG	4 cut(s)	226, 457, 458, 604
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	853, 1117
SfcI	CTRYAG	4 cut(s)	184, 264, 850, 1012
SfoI	GGCGCC	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	3 cut(s)	192, 328, 592
SmaI	CCCGGG	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	288, 1239
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	77, 272, 510, 911
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	38, 774
SstI	GAGCTC	1 cut(s)	700
StyD4I	CCNGG	4 cut(s)	224, 455, 456, 602
TaaI	ACNGT	4 cut(s)	299, 523, 558, 1190
TaiI	ACGT	3 cut(s)	371, 616, 763
TaqI	TCGA	4 cut(s)	81, 120, 435, 636
TasI	AATT	4 cut(s)	77, 272, 510, 911
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	170, 951
TfiI	GAWTC	5 cut(s)	34, 95, 311, 770, 974
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	4 cut(s)	211, 657, 889, 913
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	338, 401, 543, 672
TspGWI	ACGGA	3 cut(s)	576, 1164, 1176
TspMI	CCCGGG	1 cut(s)	456
TspRI	CASTG	4 cut(s)	211, 657, 889, 913
VpaK11BI	GGWCC	3 cut(s)	192, 328, 592
XagI	CCTNNNNNAGG	1 cut(s)	1015
XapI	RAATTY	4 cut(s)	77, 272, 510, 911
XbaI	TCTAGA	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmaI	CCCGGG	1 cut(s)	456
XspI	CTAG	2 cut(s)	38, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.