Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014781

Physical Location & Seq

Genomic Coordinates Forward (+)

39279077 .. 39280213

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGGAGAAGCATATGACTACCTTAAAAGAGATATGGATACACATACCCAGATACAGTATACAGTGTGCATTTTAAAGAACTTGAATTACGATAAAGGCAGAGGGTGTCTAAAAGTCAGTATAGAACATGGACGAAAGGGACGATCTAATGAAGGTGGTGAAGTTCCTATTATCAACGAGTGGTATGCCTTGATGAAGTTCCTATTAAGATTCTCACAGCCTCTAAAGAATGCATTCAAACTTGGTTTGAAGTTTCCTGCTATTAAGGGCCTTCTCATCCCATTCCTTCCAAAGAAGCAACTTCCAAGAGTCATACCAACAGGTCTGCCTCCAGGTCCAGATGCAAAATCAGAAAGGAGGGATATGAGAGCACCAGGCAGTAACACTATTAGCGCTATGACTGCAACTGTAGTCCCTACACTCAGTCCTGGATCACCTGGCCCTAATGTTCTACAGATGACAGCAGTTCCTCTACTCCCGAGACTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.19

Weight (kDa)

9.82

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014781)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g53530 FvH4_6g53640
malus_domestica	MD09G1010700.v1.1
prunus_persica	Prupe.3G306400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0175571
rosa_laevigata	RLG00000022340
rosa_multiflora	Rmu_co8247963.1_g000001 Rmu_sc0000998.1_g000024 Rmu_sc0008219.1_g000005 Rmu_sc0013970.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077210
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665500 Rh2BG676300 Rh2CG639500 Rh2DG690300
rosa_wichuraiana	Rw2G054560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	442
AfeI	AGCGCT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	88, 241, 253
AjnI	CCWGG	4 cut(s)	334, 376, 430, 439
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	397
AoxI	GGCC	2 cut(s)	271, 442
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	271, 338, 443
AsuHPI	GGTGA	2 cut(s)	173, 429
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	4 cut(s)	336, 378, 432, 441
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	493
BfmI	CTRYAG	2 cut(s)	411, 455
BfoI	RGCGCY	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	34
Bme1390I	CCNGG	4 cut(s)	336, 378, 432, 441
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	271, 338, 443
BmrFI	CCNGG	4 cut(s)	336, 378, 432, 441
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	318
BseBI	CCWGG	4 cut(s)	336, 378, 432, 441
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	273, 444
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	481
BslFI	GGGAC	2 cut(s)	156, 401
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	2 cut(s)	156, 401
BsmI	GAATGC	2 cut(s)	236, 238
BsnI	GGCC	2 cut(s)	273, 444
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	146, 434
BspANI	GGCC	2 cut(s)	273, 444
BspCNI	CTCAG	1 cut(s)	438
BspPI	GGATC	1 cut(s)	442
BssMI	GATC	2 cut(s)	146, 434
BssNAI	GTATAC	1 cut(s)	63
Bst1107I	GTATAC	1 cut(s)	63
Bst2UI	CCWGG	4 cut(s)	336, 378, 432, 441
Bst4CI	ACNGT	3 cut(s)	60, 67, 412
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	149, 437
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	2 cut(s)	146, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	4 cut(s)	336, 378, 432, 441
BstSCI	CCNGG	4 cut(s)	334, 376, 430, 439
BstSFI	CTRYAG	2 cut(s)	411, 455
BstZ17I	GTATAC	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	273, 444
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	271, 338, 443
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	3 cut(s)	223, 273, 444
CviKI_1	RGCY	3 cut(s)	223, 273, 444
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	2 cut(s)	148, 436
DpnII	GATC	2 cut(s)	146, 434
DraI	TTTAAA	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	4 cut(s)	334, 376, 430, 439
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	1 cut(s)	134
FaqI	GGGAC	2 cut(s)	156, 401
FatI	CATG	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	62
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	493
GlaI	GCGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	273, 444
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	213, 312
HphI	GGTGA	2 cut(s)	173, 429
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	341, 481
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	3 cut(s)	149, 284, 299
HpyCH4III	ACNGT	3 cut(s)	60, 67, 412
HpyCH4V	TGCA	4 cut(s)	72, 236, 347, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	146, 434
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	148, 436
MboI	GATC	2 cut(s)	146, 434
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	98, 234, 342, 354, 483
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	4 cut(s)	27, 77, 209, 267
MspR9I	CCNGG	4 cut(s)	336, 378, 432, 441
Mva1269I	GAATGC	2 cut(s)	236, 238
MvaI	CCWGG	4 cut(s)	336, 378, 432, 441
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	2 cut(s)	146, 434
NlaIII	CATG	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	2 cut(s)	236, 238
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	430
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	4 cut(s)	334, 376, 430, 439
PspGI	CCWGG	4 cut(s)	334, 376, 430, 439
PspPI	GGNCC	3 cut(s)	271, 338, 443
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
SaqAI	TTAA	4 cut(s)	27, 77, 209, 267
Sau3AI	GATC	2 cut(s)	146, 434
Sau96I	GGNCC	3 cut(s)	271, 338, 443
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	4 cut(s)	336, 378, 432, 441
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	5 cut(s)	27, 160, 328, 340, 442
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	411, 455
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	493
StyD4I	CCNGG	4 cut(s)	334, 376, 430, 439
TaaI	ACNGT	3 cut(s)	60, 67, 412
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	4 cut(s)	27, 77, 209, 267
Tru9I	TTAA	4 cut(s)	27, 77, 209, 267
TscAI	CASTG	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	168, 212
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.