Rmu_co8247963.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8247963.1
OG0014781
Physical Location & Seq
Forward (+)
1 .. 470
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8247963.1_g000001.1.cds

Sequence Viewer

Length: 470 bp
tgaagttcatattaagattctctcagcctcaaaagaattcgttcaaacttggtttcaagtttgctgctaagggccttatcctcccattccttccaaagaagcaatggccaagagtcatacctgcatcatcccatccgaaaacaggtctacctccagtccttcctccaggtccagatacaaaatctggaaggagagatgtgagagcaccaggcggtaacactatgactgcaactgtagtccctgtactcagtcctggatcacctggccctaatgttctacaaatgacagcaggttcctctacttccgagactacactaggtacgcagagagcagtggaagcaaaacagcccaagggactgaaattagagcagaaaagtgatctgaagaaactgagggagttggcaagggcaagtttttcaggggattcaaatgtcgagaaagctagcaccagctatggtcctaaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.54

Weight (kDa)

10.64

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 129, 280
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 2 cut(s) 245, 321
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 3 cut(s) 45, 57, 428
AjnI CCWGG 4 cut(s) 165, 207, 252, 261
AluBI AGCT 2 cut(s) 442, 452
AluI AGCT 2 cut(s) 442, 452
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 264
AoxI GGCC 3 cut(s) 72, 106, 264
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 4 cut(s) 72, 169, 265, 457
AsuHPI GGTGA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 442
AvaII GGWCC 2 cut(s) 169, 457
BalI TGGCCA 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 4 cut(s) 167, 209, 254, 263
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 316, 443
BfmI CTRYAG 1 cut(s) 233
BfuAI ACCTGC 2 cut(s) 129, 280
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 4 cut(s) 167, 209, 254, 263
Bme18I GGWCC 2 cut(s) 169, 457
BmgT120I GGNCC 4 cut(s) 72, 169, 265, 457
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 4 cut(s) 167, 209, 254, 263
BmsI GCATC 1 cut(s) 133
BmtI GCTAGC 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 137, 149
Bpu10I CCTNAGC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 4 cut(s) 167, 209, 254, 263
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 127, 132
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 37, 261, 382
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 3 cut(s) 74, 108, 266
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 2 cut(s) 223, 368
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 2 cut(s) 223, 368
BsnI GGCC 3 cut(s) 74, 108, 266
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 256, 378
BspACI CCGC 1 cut(s) 212
BspANI GGCC 3 cut(s) 74, 108, 266
BspCNI CTCAG 3 cut(s) 36, 260, 383
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 2 cut(s) 129, 280
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 256, 378
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 4 cut(s) 167, 209, 254, 263
Bst4CI ACNGT 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 4 cut(s) 23, 68, 247, 391
BstF5I GGATG 2 cut(s) 127, 132
BstKTI GATC 2 cut(s) 259, 381
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 256, 378
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 4 cut(s) 167, 209, 254, 263
BstSCI CCNGG 4 cut(s) 165, 207, 252, 261
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 3 cut(s) 74, 108, 266
BtsCI GGATG 2 cut(s) 127, 132
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 2 cut(s) 129, 280
Cac8I GCNNGC 1 cut(s) 444
Cfr13I GGNCC 4 cut(s) 72, 169, 265, 457
Csp6I GTAC 2 cut(s) 244, 320
CviJI RGCY 7 cut(s) 27, 74, 108, 266, 348, 442, 452
CviKI_1 RGCY 7 cut(s) 27, 74, 108, 266, 348, 442, 452
CviQI GTAC 2 cut(s) 244, 320
DdeI CTNAG 4 cut(s) 23, 68, 247, 391
DpnI GATC 2 cut(s) 258, 380
DpnII GATC 2 cut(s) 256, 378
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 169, 457
Eco57I CTGAAG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 4 cut(s) 165, 207, 252, 261
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaiI YATR 4 cut(s) 10, 118, 223, 455
FaqI GGGAC 2 cut(s) 223, 368
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 2 cut(s) 114, 119
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 316, 443
GluI GCNGC 1 cut(s) 65
GsuI CTGGAG 2 cut(s) 137, 149
HaeIII GGCC 3 cut(s) 74, 108, 266
HinfI GANTC 3 cut(s) 17, 113, 424
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 137, 306, 383
Hpy188III TCNNGA 3 cut(s) 172, 185, 435
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 100, 169, 182
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 124, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 4 cut(s) 23, 68, 247, 391
Kzo9I GATC 2 cut(s) 256, 378
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 316, 443
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 258, 380
MboI GATC 2 cut(s) 256, 378
MboII GAAGA 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 2 cut(s) 36, 361
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 6 cut(s) 38, 91, 161, 173, 306, 386
Mox20I TGGCCA 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 108
MspR9I CCNGG 4 cut(s) 167, 209, 254, 263
MvaI CCWGG 4 cut(s) 167, 209, 254, 263
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 2 cut(s) 256, 378
NheI GCTAGC 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 17, 424
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 4 cut(s) 165, 207, 252, 261
PspGI CCWGG 4 cut(s) 165, 207, 252, 261
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 4 cut(s) 72, 169, 265, 457
RsaI GTAC 2 cut(s) 245, 321
RsaNI GTAC 2 cut(s) 244, 320
SaqAI TTAA 1 cut(s) 13
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 256, 378
Sau96I GGNCC 4 cut(s) 72, 169, 265, 457
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 4 cut(s) 167, 209, 254, 263
SduI GDGCHC 1 cut(s) 207
SetI ASST 9 cut(s) 123, 147, 153, 171, 264, 294, 321, 444, 454
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 2 cut(s) 169, 457
Sse9I AATT 2 cut(s) 36, 361
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 316, 443
StyD4I CCNGG 4 cut(s) 165, 207, 252, 261
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 36, 361
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 17, 424
Tru1I TTAA 1 cut(s) 13
Tru9I TTAA 1 cut(s) 13
TscAI CASTG 1 cut(s) 338
TseI GCWGC 1 cut(s) 64
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 169, 457
XapI RAATTY 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 2 cut(s) 316, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.