Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014781

Physical Location & Seq

Genomic Coordinates Reverse (-)

711449 .. 716366

Gene Structure 4918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1010700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3360 bp

ATGGCCGTCCTTGGAGGTGGTTTCCTCATGTTTCCTCAGTATGCCTTTATTGTGCTTAGTTTGCTGTATCTACAAGATGCAGCCGAGTCCACGGTCCTCGTTCGTTTCGACAGAGCTCCGCCGGCACGGTCGAGGTATTCTTCCGCTGTTTTCCGCTACTCCGTCGTCACGCCTGACGGTTCCAATGCATGCAAGCACAATGTGTGTTCCATTTTCTGTCAGCTTGATGGCCAAATTTTGAGTCCATGTCCAGCTCGTGCCATTGTATTAAAAAACTTGACCGTTAACTGCCATCACGAATTTCGTCTCAACGTTACAACTCGGGATGGACGGAGAAACTCATCGGCTTATTCTTGGTTCATTGATACAATACCACCAACTGCAACAATTTTCAGTGAACGGAATTACACAAGTGCTGCAAAAATAGCCATTGATGTCACATTTAGTGAAGCTTGCACCGGAAGGGGCGGCTTCACGTGTTTGAACTCATCAAGCTGTGATGTCATAGTAAATGGTCCTGGCCATGTACAAGCATCTTCGTTACGCATGATTAAACCTAGTATCAGTTACAGCCTTGATGTAATTCTCTCCAAGAAAAGTTTATGCGGGCGTGTTGCCATCAGAATGGCAGATTGTTTTTGTACAGATCAGGCAGGAAACGGATTTACAAGGACAAATGGTTCCACAATCATCGTTCGCTTTGATAGAAGGCCAGTTCTCGCAGATTTGTGGACCTCCGTTCCAGCCTATGAGTTGGCGATTAATGGGGTTCCACGAACTGTCCGTGCTACTAACAAAATGGAGGACATGGAAATATTTTTGGACTTCAGCATTCCCGTTATGAACACAACAGAGCAGGTCCAGAATGCATTGGTTGTAAATTCAGGTATCTTAGTACCTAGTCATGGTAGAAATCAAGGAAACCGCGGGTTTAAATTCCAACTCAGAAATACATCTACAACTGAAATCATCACGGTTAAATTACGAGCTGGATTTATACTCGGGAGGACAGGCACTCCTGTCACATCGGTTCCCTCGGTTACTTTTCTTTATGATTCTGTGGAGACTGGTGTAGGGTTGAGTACTGGTTCTCAAAATTTTACAAAGGACCGCGTCATCAGTATGGTAGTTGAGTTTACAAAGCCGGTCTTTGGCTTTCAGGCCTCCATGGTAAATGTGTTCGGGGGTAGAATAACAAGGTTTAGGGAACTCTCGAGAGCTCTGTACTCGTTGAAAGTTTTGGCAGCCACGGAGAATGTAGTGTCAGTTGCGATTCCAGCAGGGAAAGTATATGATATATCAGGCAATCCAAACATGGCATCCAACCAACTCGAAGTGAAATACTACTCAACCCCTGCAATATCAATCGCATTGCACTCTTTTGTTACTGTGGGTATATTAGCGACATCATTAGCAGCTGCTATTTTCTCCGTTTCTTCTGCAAATCTTGGAGCAGTGGGAACTCTTGCTTCTGAGAGTTCCAACGCCGTTGCTTCTGACTCAATGAACCTTCATGGTATGGTCGGACACCTTCAAGTTTTTGTTCTCTCAGACTGGCTCCCAGTCAATCAGCCAATTGAATATTTGGAGACAACGAAAGGTCTTAGGTGGCTCATACCTCGCCAAAAGCTTCCATGGAAAAAGGACAACTCTTCAGATTGGCCACACCAAGAGAAGCTTGAGACAACGACTTCAACTGAAATTGACATATGTTTTACCAACTCATCTTATATGTGGTATGATATACCAGTGCCAATTGAGGTGTACCCCAAGTCGGGTTGGCTTCATGGACAGCATAGTATGCGTATGCCACCTTATGGACAACCTCTTAATTCGAATGAATACTTCACATATTTCTTGAGAGGAGAGCCGTTGTCTGCTAGCAATGTCATCAAGGGAATGGAGAATTACAGAGGGTGGGAAGACTTGCAGATGAACCTTTTTTGGCTTGGCATTGGAGGAGGTAGTTTAGTCGTAATCCACGTGTTGGTATTACTTTTCCTAAGGTGGAGACTAGGGACACCAGTTCACGGAATACTCTTGGTGCCCAGATTCGAGCTCTTTCTTTTGATTCTCATGCTGCCTTGTATCTCTCAGTCCTCTGCGTTTGTTATTAAAGGTGGTACGACAGGGGGAATAATTATTGGGGCTTTATTGCTAGCTATCCCCGCAGCCCTTATCTTATCGGTGTGTCTTTTTCAAATCATTGCAATCTTCTCCAGCAATTTTGTACAGTACAAGGAAGTCGAGCATGTAGCTAGAAAAGATCCGTGGTATGCAAGGCTCTGGTATTTATTCACAGGGAGGCCCAGAGCCGGAAAATGGTTTCATAAGGAAGGGCTTCCTTCATCTTTCCTTCCACGATTTGGGATTCTCTTCATAAGTTTGCAGGGTCCTCCATTGATCATCTCTGCTGATCAAAATGAACCAAACAGCGTATCCAAATGCACTGGAGGTGGCCATAGTGGTATTGGGAGAATGCGACCGGTCAGCTTGGATGAAAGCACAGCAGAAACAACAATTCCTATATCCAAAAGGCTCTTGGGTTGTGCTAGATCCTCCTATATTATTCTCGATCTTTTAAGACGGGTCTGTTTGGGCATCATATCCGGAGCTTACTCATCAACGAAATCAAGCCAAAGCATATTAGCATTGGCCATTACCCTGGTACAGTTCATCTATCTGTTTACCCTGAAACCCTACATCAAGAGGGCAGTCCATCTGGTGGAAAGTGTTTCTCTACTGTGTGAGGTGGGCATATTTTCGCTATTTATCGTTATTAATGGCTCAAATCCTGTTAAATCAAGAAGCTTCGGATTTATAATGCTAGCTCTCCTATTCGTTACCTTCGTTGCCCACATGATAAACGAATGGTATACTTTGGTAAAATCCACACTCAGACTCTCACAGCCTCAAAAAAATTCATTCAAGCTCGGATTGAAGTTTGTCGCTAAGGGTCTTATCCTCCCGTTCCTTCCAAGGAAACAATGGTCAAGACTCATGGCTGCATCCTCTCAGCCTAAAACAGGCCTAGCTCCACTCCTTACAAGAGCACCGCATGCTGACCCTATTAGCGCTATGACTGCAACCGTAGTCCCTGTGCTCAGTCCGGGATCACCTGGCCCTAATGTTGTTCAAATCACAGGTTCCACTAATGTGGAGACGGCCCTCAGCACGCAGACAGCAGCAGAAGCAAAACGGCAAAAGGGTCTTAAACTAGAGCCGAAAAGTGATCTGAAAAAACTGAGGGAGTTGGCAATGGCAAGCTTTTCGGGAGATTCAAATCTTGAGGAAGCCAGTACTCGCTACGGTACTAGGATGCAAACTGCTCGAGCCTCTACTTCTAGAACAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1120

Amino Acids

122.73

Weight (kDa)

9.55

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014781)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g53530 FvH4_6g53640
malus_domestica	MD09G1010700.v1.1
prunus_persica	Prupe.3G306400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0175571
rosa_laevigata	RLG00000022340
rosa_multiflora	Rmu_co8247963.1_g000001 Rmu_sc0000998.1_g000024 Rmu_sc0008219.1_g000005 Rmu_sc0013970.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077210
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665500 Rh2BG676300 Rh2CG639500 Rh2DG690300
rosa_wichuraiana	Rw2G054560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2822
Acc36I	ACCTGC	1 cut(s)	847
AccB1I	GGYRCC	1 cut(s)	2044
AccB7I	CCANNNNNTGG	4 cut(s)	1817, 1987, 2366, 2725
AccI	GTMKAC	1 cut(s)	2876
AccII	CGCG	2 cut(s)	927, 1113
AccIII	TCCGGA	1 cut(s)	2609
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	3 cut(s)	2261, 2550, 3121
AcoI	YGGCCR	6 cut(s)	3, 229, 520, 1661, 2458, 2655
AcsI	RAATTY	6 cut(s)	234, 299, 880, 935, 1096, 2920
AcuI	CTGAAG	2 cut(s)	811, 1638
AcvI	CACGTG	2 cut(s)	477, 1984
AdeI	CACNNNGTG	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	3076
AflIII	ACRYGT	2 cut(s)	476, 1983
AgeI	ACCGGT	1 cut(s)	2485
AjnI	CCWGG	3 cut(s)	517, 2664, 3118
AleI	CACNNNNGTG	1 cut(s)	3155
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
Alw21I	GWGCWC	5 cut(s)	118, 1222, 2061, 3055, 3105
Alw26I	GTCTC	6 cut(s)	311, 1058, 1583, 1676, 2005, 3155
AlwI	GGATC	3 cut(s)	2261, 2550, 3121
Ama87I	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
Aor13HI	TCCGGA	1 cut(s)	2609
Aor51HI	AGCGCT	1 cut(s)	3076
ApeKI	GCWGC	9 cut(s)	80, 416, 1244, 1415, 1418, 2080, 2171, 3005, 3185
ApoI	RAATTY	6 cut(s)	234, 299, 880, 935, 1096, 2920
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AseI	ATTAAT	2 cut(s)	762, 2781
AsiGI	ACCGGT	1 cut(s)	2485
Asp700I	GAANNNNTTC	1 cut(s)	2340
AspLEI	GCGC	1 cut(s)	3077
AspS9I	GGNCC	9 cut(s)	94, 515, 732, 859, 1108, 2307, 2393, 3122, 3166
AsuC2I	CCSGG	1 cut(s)	3111
AsuHPI	GGTGA	1 cut(s)	3108
AsuII	TTCGAA	1 cut(s)	1835
AsuNHI	GCTAGC	3 cut(s)	1880, 2158, 2827
AvaI	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
AvaII	GGWCC	6 cut(s)	94, 515, 732, 859, 1108, 2393
AxyI	CCTNAGG	1 cut(s)	2003
BaeGI	GKGCMC	1 cut(s)	2049
BalI	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
BanI	GGYRCC	1 cut(s)	2044
BanII	GRGCYC	3 cut(s)	118, 1222, 2061
BauI	CACGAG	1 cut(s)	255
BbrPI	CACGTG	2 cut(s)	477, 1984
BbsI	GAAGAC	1 cut(s)	1929
Bbv12I	GWGCWC	5 cut(s)	118, 1222, 2061, 3055, 3105
BbvCI	CCTCAGC	1 cut(s)	3170
BbvI	GCAGC	9 cut(s)	92, 403, 1256, 1405, 1427, 2067, 2183, 2992, 3197
BccI	CCATC	5 cut(s)	221, 300, 320, 626, 2727
BceAI	ACGGC	4 cut(s)	1472, 1855, 3180, 3215
BcgI	CGANNNNNNTGC	4 cut(s)	3252, 3286, 3311, 3345
BciT130I	CCWGG	3 cut(s)	519, 2666, 3120
BciVI	GTATCC	1 cut(s)	2449
BclI	TGATCA	2 cut(s)	2403, 2416
BcnI	CCSGG	1 cut(s)	3111
BcoDI	GTCTC	6 cut(s)	311, 1058, 1583, 1676, 2005, 3155
BfoI	RGCGCY	1 cut(s)	3078
BfuAI	ACCTGC	1 cut(s)	847
BfuI	GTATCC	1 cut(s)	2449
BmcAI	AGTACT	2 cut(s)	1084, 3301
Bme1390I	CCNGG	4 cut(s)	519, 2666, 3111, 3120
Bme18I	GGWCC	6 cut(s)	94, 515, 732, 859, 1108, 2393
BmeT110I	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
BmgT120I	GGNCC	9 cut(s)	94, 515, 732, 859, 1108, 2307, 2393, 3122, 3166
BmiI	GGNNCC	8 cut(s)	181, 682, 771, 1032, 1559, 2046, 2394, 3148
BmrFI	CCNGG	4 cut(s)	519, 2666, 3111, 3120
BmrI	ACTGGG	1 cut(s)	1556
BmsI	GCATC	6 cut(s)	67, 542, 1328, 2610, 3017, 3309
BmtI	GCTAGC	3 cut(s)	1884, 2162, 2831
BmuI	ACTGGG	1 cut(s)	1556
BpiI	GAAGAC	1 cut(s)	1929
BpmI	CTGGAG	2 cut(s)	2203, 2472
Bpu10I	CCTNAGC	2 cut(s)	2952, 3170
Bpu14I	TTCGAA	1 cut(s)	1835
BpuEI	CTTGAG	3 cut(s)	1700, 1879, 3308
BpuMI	CCSGG	1 cut(s)	3111
BsaAI	YACGTR	2 cut(s)	477, 1984
BsaBI	GATNNNNATC	1 cut(s)	3282
BsaWI	WCCGGW	3 cut(s)	458, 2485, 2609
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bse118I	RCCGGY	3 cut(s)	121, 1144, 2485
Bse1I	ACTGG	9 cut(s)	713, 1072, 1090, 1559, 1562, 1748, 2024, 2455, 3297
Bse21I	CCTNAGG	1 cut(s)	2003
Bse3DI	GCAATG	4 cut(s)	1370, 1891, 2205, 3264
Bse8I	GATNNNNATC	1 cut(s)	3282
BseAI	TCCGGA	1 cut(s)	2609
BseBI	CCWGG	3 cut(s)	519, 2666, 3120
BseGI	GGATG	5 cut(s)	331, 1319, 2503, 3008, 3324
BseJI	GATNNNNATC	1 cut(s)	3282
BseMI	GCAATG	4 cut(s)	1370, 1891, 2205, 3264
BseNI	ACTGG	9 cut(s)	713, 1072, 1090, 1559, 1562, 1748, 2024, 2455, 3297
BseRI	GAGGAG	2 cut(s)	1878, 1974
BseSI	GKGCMC	1 cut(s)	2049
BseXI	GCAGC	9 cut(s)	92, 403, 1256, 1405, 1427, 2067, 2183, 2992, 3197
Bsh1236I	CGCG	2 cut(s)	927, 1113
Bsh1285I	CGRYCG	2 cut(s)	131, 2486
BshNI	GGYRCC	1 cut(s)	2044
BshTI	ACCGGT	1 cut(s)	2485
BsiEI	CGRYCG	2 cut(s)	131, 2486
BsiHKAI	GWGCWC	5 cut(s)	118, 1222, 2061, 3055, 3105
BsiHKCI	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
BsiSI	CCGG	7 cut(s)	122, 459, 1145, 2316, 2486, 2610, 3110
BslFI	GGGAC	2 cut(s)	2032, 3080
BsmAI	GTCTC	6 cut(s)	311, 1058, 1583, 1676, 2005, 3155
BsmBI	CGTCTC	2 cut(s)	311, 3155
BsmFI	GGGAC	2 cut(s)	2032, 3080
BsmI	GAATGC	3 cut(s)	831, 871, 2484
BsoBI	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
Bsp119I	TTCGAA	1 cut(s)	1835
Bsp1286I	GDGCHC	6 cut(s)	118, 1222, 2049, 2061, 3055, 3105
Bsp13I	TCCGGA	1 cut(s)	2609
Bsp1407I	TGTACA	3 cut(s)	526, 641, 2230
Bsp143I	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
Bsp19I	CCATGG	2 cut(s)	1167, 1634
BspEI	TCCGGA	1 cut(s)	2609
BspFNI	CGCG	2 cut(s)	927, 1113
BspLI	GGNNCC	8 cut(s)	181, 682, 771, 1032, 1559, 2046, 2394, 3148
BspMI	ACCTGC	1 cut(s)	847
BspOI	GCTAGC	3 cut(s)	1884, 2162, 2831
BspPI	GGATC	3 cut(s)	2261, 2550, 3121
BspT104I	TTCGAA	1 cut(s)	1835
BspT107I	GGYRCC	1 cut(s)	2044
BsrDI	GCAATG	4 cut(s)	1370, 1891, 2205, 3264
BsrFI	RCCGGY	3 cut(s)	121, 1144, 2485
BsrGI	TGTACA	3 cut(s)	526, 641, 2230
BsrI	ACTGG	9 cut(s)	713, 1072, 1090, 1559, 1562, 1748, 2024, 2455, 3297
BssAI	RCCGGY	3 cut(s)	121, 1144, 2485
BssMI	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
BssNAI	GTATAC	1 cut(s)	2877
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	4 cut(s)	10, 1167, 1634, 2978
Bst1107I	GTATAC	1 cut(s)	2877
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	519, 2666, 3120
Bst6I	CTCTTC	2 cut(s)	1657, 2381
BstAPI	GCANNNNNTGC	2 cut(s)	1801, 3059
BstAUI	TGTACA	3 cut(s)	526, 641, 2230
BstBAI	YACGTR	2 cut(s)	477, 1984
BstBI	TTCGAA	1 cut(s)	1835
BstDSI	CCRYGG	6 cut(s)	90, 925, 1167, 1248, 1634, 2270
BstENI	CCTNNNNNAGG	1 cut(s)	3024
BstF5I	GGATG	5 cut(s)	331, 1319, 2503, 3008, 3324
BstFNI	CGCG	2 cut(s)	927, 1113
BstH2I	RGCGCY	1 cut(s)	3078
BstHHI	GCGC	1 cut(s)	3077
BstKTI	GATC	8 cut(s)	649, 2269, 2406, 2419, 2558, 2578, 3116, 3235
BstMAI	GTCTC	6 cut(s)	311, 1058, 1583, 1676, 2005, 3155
BstMBI	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
BstMCI	CGRYCG	2 cut(s)	131, 2486
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 122, 425, 1277, 1801, 2168, 3059, 3083, 3191
BstNI	CCWGG	3 cut(s)	519, 2666, 3120
BstNSI	RCATGY	3 cut(s)	192, 2255, 3062
BstSCI	CCNGG	4 cut(s)	517, 2664, 3109, 3118
BstSLI	GKGCMC	1 cut(s)	2049
BstUI	CGCG	2 cut(s)	927, 1113
BstV1I	GCAGC	9 cut(s)	92, 403, 1256, 1405, 1427, 2067, 2183, 2992, 3197
BstV2I	GAAGAC	1 cut(s)	1929
BstX2I	RGATCY	2 cut(s)	2266, 2555
BstXI	CCANNNNNNTGG	3 cut(s)	625, 2665, 3157
BstYI	RGATCY	2 cut(s)	2266, 2555
BstZ17I	GTATAC	1 cut(s)	2877
Bsu36I	CCTNAGG	1 cut(s)	2003
BsuI	GTATCC	1 cut(s)	2449
BtgI	CCRYGG	6 cut(s)	90, 925, 1167, 1248, 1634, 2270
BtsCI	GGATG	5 cut(s)	331, 1319, 2503, 3008, 3324
BtsI	GCAGTG	1 cut(s)	1461
BtsIMutI	CAGTG	4 cut(s)	400, 1461, 1755, 2448
BveI	ACCTGC	1 cut(s)	847
CfoI	GCGC	1 cut(s)	3077
Cfr10I	RCCGGY	3 cut(s)	121, 1144, 2485
Cfr13I	GGNCC	9 cut(s)	94, 515, 732, 859, 1108, 2307, 2393, 3122, 3166
Cfr42I	CCGCGG	1 cut(s)	928
CseI	GACGC	1 cut(s)	1102
CspAI	ACCGGT	1 cut(s)	2485
DpnI	GATC	8 cut(s)	648, 2268, 2405, 2418, 2557, 2577, 3115, 3234
DpnII	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
DraI	TTTAAA	1 cut(s)	934
DraIII	CACNNNGTG	1 cut(s)	202
EaeI	YGGCCR	6 cut(s)	3, 229, 520, 1661, 2458, 2655
Eam1104I	CTCTTC	2 cut(s)	1657, 2381
EarI	CTCTTC	2 cut(s)	1657, 2381
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	3 cut(s)	116, 1220, 2059
Eco130I	CCWWGG	4 cut(s)	10, 1167, 1634, 2978
Eco147I	AGGCCT	2 cut(s)	1163, 3030
Eco24I	GRGCYC	3 cut(s)	118, 1222, 2061
Eco47I	GGWCC	6 cut(s)	94, 515, 732, 859, 1108, 2393
Eco47III	AGCGCT	1 cut(s)	3076
Eco53kI	GAGCTC	3 cut(s)	116, 1220, 2059
Eco57I	CTGAAG	2 cut(s)	811, 1638
Eco72I	CACGTG	2 cut(s)	477, 1984
Eco81I	CCTNAGG	1 cut(s)	2003
Eco88I	CYCGRG	4 cut(s)	321, 1001, 1213, 3330
EcoICRI	GAGCTC	3 cut(s)	116, 1220, 2059
EcoNI	CCTNNNNNAGG	1 cut(s)	3024
EcoO109I	RGGNCCY	1 cut(s)	2393
EcoRII	CCWGG	3 cut(s)	517, 2664, 3118
EcoT14I	CCWWGG	4 cut(s)	10, 1167, 1634, 2978
EcoT22I	ATGCAT	2 cut(s)	190, 871
EcoT38I	GRGCYC	3 cut(s)	118, 1222, 2061
ErhI	CCWWGG	4 cut(s)	10, 1167, 1634, 2978
Esp3I	CGTCTC	2 cut(s)	311, 3155
FalI	AAGNNNNNCTT	4 cut(s)	1133, 1165, 1662, 1694
FaqI	GGGAC	2 cut(s)	2032, 3080
FauI	CCCGC	3 cut(s)	599, 920, 2176
FauNDI	CATATG	1 cut(s)	1709
FbaI	TGATCA	2 cut(s)	2403, 2416
FblI	GTMKAC	1 cut(s)	2876
FokI	GGATG	5 cut(s)	338, 1306, 2510, 2995, 3331
FriOI	GRGCYC	3 cut(s)	118, 1222, 2061
GlaI	GCGC	1 cut(s)	3076
GsuI	CTGGAG	2 cut(s)	2203, 2472
HaeII	RGCGCY	1 cut(s)	3078
HapII	CCGG	7 cut(s)	122, 459, 1145, 2316, 2486, 2610, 3110
HgaI	GACGC	1 cut(s)	1102
HhaI	GCGC	1 cut(s)	3077
Hin6I	GCGC	1 cut(s)	3075
HinP1I	GCGC	1 cut(s)	3075
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	5 cut(s)	450, 1628, 1676, 2809, 3265
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	7 cut(s)	122, 459, 1145, 2316, 2486, 2610, 3110
HphI	GGTGA	1 cut(s)	3108
Hpy166II	GTNNAC	9 cut(s)	90, 286, 398, 732, 1137, 1765, 2029, 2688, 2877
Hpy8I	GTNNAC	9 cut(s)	90, 286, 398, 732, 1137, 1765, 2029, 2688, 2877
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	9 cut(s)	456, 702, 1520, 1541, 2330, 2355, 2366, 2857, 2984
HpyCH4IV	ACGT	3 cut(s)	312, 476, 1983
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 122, 425, 1277, 1801, 2168, 3059, 3083, 3191
HpySE526I	ACGT	3 cut(s)	312, 476, 1983
HspAI	GCGC	1 cut(s)	3075
Kpn2I	TCCGGA	1 cut(s)	2609
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	2 cut(s)	2403, 2416
KspAI	GTTAAC	1 cut(s)	286
KspI	CCGCGG	1 cut(s)	928
Kzo9I	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
LmnI	GCTCC	5 cut(s)	121, 1451, 1563, 2612, 3040
Lsp1109I	GCAGC	9 cut(s)	92, 403, 1256, 1405, 1427, 2067, 2183, 2992, 3197
LweI	GCATC	6 cut(s)	67, 542, 1328, 2610, 3017, 3309
MaeII	ACGT	3 cut(s)	312, 476, 1983
MaeIII	GTNAC	9 cut(s)	166, 313, 436, 540, 566, 1021, 1039, 1384, 2842
MalI	GATC	8 cut(s)	648, 2268, 2405, 2418, 2557, 2577, 3115, 3234
MboI	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
MboII	GAAGA	7 cut(s)	132, 528, 1428, 1644, 1934, 2206, 2368
MfeI	CAATTG	2 cut(s)	1575, 1755
MflI	RGATCY	2 cut(s)	2266, 2555
MhlI	GDGCHC	6 cut(s)	118, 1222, 2049, 2061, 3055, 3105
MlsI	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
MluNI	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
MlyI	GAGTC	5 cut(s)	95, 250, 1493, 2895, 2991
MmeI	TCCRAC	4 cut(s)	964, 1347, 1504, 1506
Mox20I	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
Mph1103I	ATGCAT	2 cut(s)	190, 871
MroI	TCCGGA	1 cut(s)	2609
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	2340
MscI	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
MslI	CAYNNNNRTG	3 cut(s)	623, 1121, 3155
Msp20I	TGGCCA	5 cut(s)	231, 522, 1663, 2460, 2657
MspA1I	CMGCKG	3 cut(s)	146, 927, 1418
MspI	CCGG	7 cut(s)	122, 459, 1145, 2316, 2486, 2610, 3110
MspR9I	CCNGG	4 cut(s)	519, 2666, 3111, 3120
MunI	CAATTG	2 cut(s)	1575, 1755
Mva1269I	GAATGC	3 cut(s)	831, 871, 2484
MvaI	CCWGG	3 cut(s)	519, 2666, 3120
MvnI	CGCG	2 cut(s)	927, 1113
MwoI	GCNNNNNNNGC	9 cut(s)	61, 122, 425, 1277, 1801, 2168, 3059, 3083, 3191
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	3111
NcoI	CCATGG	2 cut(s)	1167, 1634
NdeI	CATATG	1 cut(s)	1709
NdeII	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
NgoMIV	GCCGGC	1 cut(s)	121
NheI	GCTAGC	3 cut(s)	1880, 2158, 2827
NlaIV	GGNNCC	8 cut(s)	181, 682, 771, 1032, 1559, 2046, 2394, 3148
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	166, 436, 1021
NsiI	ATGCAT	2 cut(s)	190, 871
NspI	RCATGY	3 cut(s)	192, 2255, 3062
NspV	TTCGAA	1 cut(s)	1835
OliI	CACNNNNGTG	1 cut(s)	3155
PaeI	GCATGC	2 cut(s)	192, 3062
PaeR7I	CTCGAG	2 cut(s)	1213, 3330
PceI	AGGCCT	2 cut(s)	1163, 3030
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 781, 1980, 2847
PctI	GAATGC	3 cut(s)	831, 871, 2484
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	2340
PfeI	GAWTC	6 cut(s)	1055, 1273, 2052, 2071, 2371, 3278
PflFI	GACNNNGTC	1 cut(s)	1112
PflMI	CCANNNNNTGG	4 cut(s)	1817, 1987, 2366, 2725
PfoI	TCCNGGA	1 cut(s)	3109
PinAI	ACCGGT	1 cut(s)	2485
PleI	GAGTC	5 cut(s)	94, 249, 1493, 2895, 2991
PmaCI	CACGTG	2 cut(s)	477, 1984
PmlI	CACGTG	2 cut(s)	477, 1984
PpsI	GAGTC	5 cut(s)	94, 249, 1493, 2895, 2991
Ppu21I	YACGTR	2 cut(s)	477, 1984
PpuMI	RGGWCCY	1 cut(s)	2393
PshBI	ATTAAT	2 cut(s)	762, 2781
PsiI	TTATAA	1 cut(s)	2822
Psp124BI	GAGCTC	3 cut(s)	118, 1222, 2061
Psp1406I	AACGTT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	2393
Psp6I	CCWGG	3 cut(s)	517, 2664, 3118
PspCI	CACGTG	2 cut(s)	477, 1984
PspGI	CCWGG	3 cut(s)	517, 2664, 3118
PspN4I	GGNNCC	8 cut(s)	181, 682, 771, 1032, 1559, 2046, 2394, 3148
PspPI	GGNCC	9 cut(s)	94, 515, 732, 859, 1108, 2307, 2393, 3122, 3166
PspPPI	RGGWCCY	1 cut(s)	2393
PspXI	VCTCGAGB	1 cut(s)	3330
PsuI	RGATCY	2 cut(s)	2266, 2555
PsyI	GACNNNGTC	1 cut(s)	1112
PvuII	CAGCTG	1 cut(s)	1418
RseI	CAYNNNNRTG	3 cut(s)	623, 1121, 3155
SacI	GAGCTC	3 cut(s)	118, 1222, 2061
SacII	CCGCGG	1 cut(s)	928
Sau3AI	GATC	8 cut(s)	646, 2266, 2403, 2416, 2555, 2575, 3113, 3232
Sau96I	GGNCC	9 cut(s)	94, 515, 732, 859, 1108, 2307, 2393, 3122, 3166
ScaI	AGTACT	2 cut(s)	1084, 3301
SchI	GAGTC	5 cut(s)	95, 250, 1493, 2895, 2991
ScrFI	CCNGG	4 cut(s)	519, 2666, 3111, 3120
SduI	GDGCHC	6 cut(s)	118, 1222, 2049, 2061, 3055, 3105
SfaNI	GCATC	6 cut(s)	67, 542, 1328, 2610, 3017, 3309
Sfr274I	CTCGAG	2 cut(s)	1213, 3330
Sfr303I	CCGCGG	1 cut(s)	928
SfuI	TTCGAA	1 cut(s)	1835
SgrBI	CCGCGG	1 cut(s)	928
SinI	GGWCC	6 cut(s)	94, 515, 732, 859, 1108, 2393
SlaI	CTCGAG	2 cut(s)	1213, 3330
SmiMI	CAYNNNNRTG	3 cut(s)	623, 1121, 3155
SmlI	CTYRAG	5 cut(s)	1213, 1679, 1858, 3287, 3330
SmoI	CTYRAG	5 cut(s)	1213, 1679, 1858, 3287, 3330
SphI	GCATGC	2 cut(s)	192, 3062
SseBI	AGGCCT	2 cut(s)	1163, 3030
SspI	AATATT	2 cut(s)	816, 1583
SstI	GAGCTC	3 cut(s)	118, 1222, 2061
StuI	AGGCCT	2 cut(s)	1163, 3030
StyD4I	CCNGG	4 cut(s)	517, 2664, 3109, 3118
StyI	CCWWGG	4 cut(s)	10, 1167, 1634, 2978
TaiI	ACGT	3 cut(s)	315, 479, 1986
TaqI	TCGA	9 cut(s)	108, 131, 1214, 1332, 1835, 2055, 2247, 2574, 3331
TatI	WGTACW	7 cut(s)	526, 641, 1082, 1224, 2230, 2235, 3299
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	6 cut(s)	1055, 1273, 2052, 2071, 2371, 3278
TscAI	CASTG	4 cut(s)	400, 1461, 1755, 2455
TseFI	GTSAC	3 cut(s)	166, 436, 1021
TseI	GCWGC	9 cut(s)	80, 416, 1244, 1415, 1418, 2080, 2171, 3005, 3185
Tsp45I	GTSAC	3 cut(s)	166, 436, 1021
TspRI	CASTG	4 cut(s)	400, 1461, 1755, 2455
Tth111I	GACNNNGTC	1 cut(s)	1112
Van91I	CCANNNNNTGG	4 cut(s)	1817, 1987, 2366, 2725
VpaK11BI	GGWCC	6 cut(s)	94, 515, 732, 859, 1108, 2393
VspI	ATTAAT	2 cut(s)	762, 2781
XagI	CCTNNNNNAGG	1 cut(s)	3024
XapI	RAATTY	6 cut(s)	234, 299, 880, 935, 1096, 2920
XbaI	TCTAGA	1 cut(s)	3344
XceI	RCATGY	3 cut(s)	192, 2255, 3062
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2468, 2539, 2985
XhoI	CTCGAG	2 cut(s)	1213, 3330
XmiI	GTMKAC	1 cut(s)	2876
XmnI	GAANNNNTTC	1 cut(s)	2340
ZrmI	AGTACT	2 cut(s)	1084, 3301
Zsp2I	ATGCAT	2 cut(s)	190, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.