Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008022

Physical Location & Seq

Genomic Coordinates Forward (+)

39779220 .. 39791401

Gene Structure 12182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54490.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2934 bp

ATGGAATTGCAAATGAAGGTGGCGCAGGCAGTTCACGTCCTGAATCACGATATAGAGTCGTGCAACCGCGTGGCAGCTAATCAGTGGCTGGTTCAGTTTCAGCAGACTGACGCCGCTTGGGCCGTCGCCACCTCCATCCTCACCTCCGATTTTCACCATTCTTTCGGCTCCAATTTCGAGGTCGAGTTCTTCGCTGCCCAGATTCTTAAACGAAAGATCCAAAATGAGGGCACTTACCTGCAGCCTGGAGCTAAAGATGCTTTGCTTAATGCCCTTCTTCTGGCTGCCAAAAGATTTAGTTCGGGCCCTCACCAGACCCAGGTTGATGGCAATGTTGCTGTTATGGAGATGCTTACTGTTCTACCAGAAGAAGTTTTGGATTCCCGAAATACTGACTCGAAAATAACTTCAGCCGACAGAAGCCAGTATGGTCAAGAGCTTCTCTCGCATACCACTATGGTTCTTGAGTTCCTATTGCAACAATCCGAGAAAAGGTTTGAAAGTGGTATACAACAACATGAAAGCAACAGAAAAATTCTGCGTTGCTTACTGAGTTGGGTTCGAGCTGGGTGCTTCTCAGAGATTCCCCAGGGATTACTACCAGCACATCCACTTCTTAACTTTGTCTTTAATTCTTTGCAGGTGCCGTCTTCATTTGATCTGGCAATTGAAGTTCTCATTGAGCTCGTGAGTCGACATGAGGGGCTACCCCAGGTTTTGTTATGTAGGGTGCATTTCATTAAAGAAATTCTTCTTCTACCAGCTCTCAGTAATGGAGACGAGAAAATAGTAGGTGGTCTTGCGTGCTTATTGTCAGAGATTGGGCAGGCTGCTCCATCTCTGATAGTAGAAGCAAGTGTTGAAGCCCTTGCGCTGACGAACACACTTTTAAGCTGTGTGACATTTCCAAGTGAGGACTGGGAGATAGCGGACTCAACTTTGCAATTTTGGTCTGGGTTAGCAAGCTATATCATTGGACTTGATGAGAACAGTGCAAATCAAAGGAAGCAAGTGGAAGACTTGTTTTTCCCTGTATTTTCAGCACTACTTGATGCACTTTTGTTACGTGCCCAGGTAGATGATTCTATGTTCAATGACGAACAAGGAACACCAGAGCTGCCTGATGGCCTTGCCTATTTTAGAACGAATCTTGTTGAACTATTGGTGGATATTTGTCAGCTTTTAAGATCTGCTACATTTGTACAGAAGCTTTTCTTTGGTGGTTGGGCCTCTGCAAATGCACCAATTGCTTGGAAGGTTGTGGAAACCAAGTTGTTTGCTCTTAATGTGGTCGCTGAGGTAATCCTACAGGAAGGCCAAATCTTTGATTTCTCAGTCATTATGCAGTTGGTGACAGTTTTGTCCACTAGGCCCTTGGATGAACTGAAGGGTATCATGTGCATTGTGCATAGATCTCTTGCAGACGTTGTTGGCTCCTTTTCTAAGTGGATCTCTGCTTTTCAAACAAATGCTAGACCCTTACTGTTATTTCTTGCTGCTGGAATATCAGAACCATTGTCCTCGAGTTCTTGTGCATCTGCATTGCGTAAAGTTTGTGAAGATGCTTCTGCAGTGATGTATGAACCTTCAAATTTGGAGATTTTGATGTGGATAGGAGAGGGTCTGGAGAAGAGTCATTTACCTTTCGAAGATGAGGAAGAAGTTGTTAGTGCAGTTAGTCTGATCCTTGGTTCTATTAACAATAAAGAATTGAAGAGTAACTTATTGGCTAGATTGCTTTCTTCTAGCTTTGAAGCTATTGGGAAACTTGTTGATAAAGATAGCCATTGCCTAAGACAAAGTCCTGCTACTTATACACAAATTTTAAACTCTGGTGCAAGAGGGCTCTACAGGATGGGAACTGTATTCAGCCATCTTGCAACATCCGTGCAGAGTGTATCTTCTGGAGATGGTTGTATGCTTGCTCTATTGCAAGTGTTTTGGCCAATGCTAGAGAAACTTTTCAGGTCTGAGCACATGGAGAACGGTAATCTATCAATCGCAGCTTGCCGAGCACTTACCCAAGCAATTCAATCATCAGGCGAACACTTCTTAAGCCTACTGCCTAATGTACTAGATTGCCTATCAACAAATTACGTGTCCTTTCAAAGTCATGAATGCTACATAAGAACTGCATCTGTTGTGATTGAAGAATTTGGTCACAAAGAAGAGTATGGACCTTTATTTGTTACTACTCTGGAGAGATTTACGCATGCCGCCTCGGTAATGGCTCTTAATTCTTCATATATATGTGACCAAGAGCCTGATCTAGTAGAGGCGTACACAAATTTTGCATCCACTTATGTTCGCGGAACTCGTAAGGAAGTAGTGGCTGCATCTGGTACCCTTCTTGAAGTTTCTTTTCAAAAGGCAGCTATATGCTGCACAGCTATGCATCGTGGAGCAGCACTTGCATCCATGTCATACATATCTTGTTTCTTGGAGGTGAGCCTGGCCTCCTTGTTGGACTCCATGTCTTGTATTCCTGAAGGTTCATTCAGTGCAATGGCCATTCAAGTCATATCCCACAGTGGCGAGGGACTTGTGTCAAATCTGGTTTATGCTTTACTTGGTGTTTCAGCAATGTCACGGGTTCACAAATGTGCCACTATTATGCAACAATTGGCAGCAATTTGCAGTTTAAGTGAGAGCACAACTGGCAAGGCTATTCTGTGTTGGGAATCTTTGCATGGATGGTTGCAGTCAGCGGTCCAGGCTCTTCCTGCTGAATACCTGAAGCAAGGGGAACTTGAAACTTTGGTACCGGTTTGGTCTAAGGCCCTCGCCGGTGCAGCCTCAGATTATGTCCAGAGCAGAAGTTGTGATGGAGGGAATAACAATTATGGTCACATGCAAGGGAAAGGTGGAAGAGTTCTGAAGCGTTTAATCCGTGAATTTGCTGATAGCCACCGGAATACACCAAACTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

978

Amino Acids

107.05

Weight (kDa)

5.17

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	104 - 260	4.1e-19	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	294 - 388	3.6e-07	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_4th	PF24139	665 - 761	4.2e-08	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12930
fragaria_vesca	FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490
malus_domestica	MD09G1000300.v1.1
prunus_persica	Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1
pyrus_communis	pycom111g00020
rosa_chinensis	RchiOBHm_Chr2g0176781
rosa_multiflora	Rmu_sc0007886.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076140
rosa_rugosa	Rorug02G0599400.1 Rorug02G0599500.1
rosa_samantha	Rh2AG676200 Rh2BG687200 Rh2CG650800 Rh2DG701500
rosa_wichuraiana	Rw2G055480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
AasI	GACNNNNNNGTC	1 cut(s)	1360
Acc36I	ACCTGC	2 cut(s)	246, 631
Acc65I	GGTACC	2 cut(s)	2342, 2761
AccB1I	GGYRCC	3 cut(s)	643, 2342, 2761
AccI	GTMKAC	2 cut(s)	508, 694
AccII	CGCG	2 cut(s)	69, 2310
AciI	CCGC	6 cut(s)	67, 114, 929, 2217, 2310, 2708
AclWI	GGATC	3 cut(s)	211, 1457, 1678
AcoI	YGGCCR	2 cut(s)	1943, 2508
AcsI	RAATTY	7 cut(s)	534, 747, 1591, 1821, 2153, 2287, 2894
AcuI	CTGAAG	5 cut(s)	393, 1406, 2508, 2756, 2897
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	5 cut(s)	1203, 2073, 2282, 2344, 2763
AfiI	CCNNNNNNNGG	4 cut(s)	226, 280, 319, 492
AflII	CTTAAG	1 cut(s)	2053
AflIII	ACRYGT	1 cut(s)	2097
AgeI	ACCGGT	1 cut(s)	2764
AhdI	GACNNNNNGTC	1 cut(s)	2473
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
AleI	CACNNNNGTG	1 cut(s)	2601
Alw21I	GWGCWC	4 cut(s)	687, 1977, 2017, 2654
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	3 cut(s)	211, 1457, 1678
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	1522
ApaI	GGGCCC	1 cut(s)	308
ApoI	RAATTY	7 cut(s)	534, 747, 1591, 1821, 2153, 2287, 2894
ArsI	GACNNNNNNTTYG	2 cut(s)	2084, 2116
AsiGI	ACCGGT	1 cut(s)	2764
Asp700I	GAANNNNTTC	3 cut(s)	750, 1211, 1961
Asp718I	GGTACC	2 cut(s)	2342, 2761
AspLEI	GCGC	2 cut(s)	25, 874
AspS9I	GGNCC	8 cut(s)	120, 304, 305, 1227, 1371, 2177, 2710, 2779
AsuHPI	GGTGA	5 cut(s)	133, 146, 302, 1363, 2458
AsuII	TTCGAA	1 cut(s)	1647
AvaI	CYCGRG	1 cut(s)	1522
AvaII	GGWCC	2 cut(s)	2177, 2710
BaeGI	GKGCMC	3 cut(s)	233, 308, 1072
BaeI	ACNNNNGTAYC	2 cut(s)	2745, 2778
BalI	TGGCCA	2 cut(s)	1945, 2510
BanI	GGYRCC	3 cut(s)	643, 2342, 2761
BanII	GRGCYC	3 cut(s)	308, 687, 1848
BauI	CACGAG	1 cut(s)	686
BbsI	GAAGAC	2 cut(s)	642, 1023
Bbv12I	GWGCWC	4 cut(s)	687, 1977, 2017, 2654
BbvCI	CCTCAGC	1 cut(s)	1296
BccI	CCATC	9 cut(s)	143, 320, 844, 1118, 1849, 1881, 1904, 2688, 2819
BceAI	ACGGC	2 cut(s)	107, 631
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BciT130I	CCWGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	7 cut(s)	1368, 1473, 1731, 1746, 1952, 2075, 2270
BfmI	CTRYAG	4 cut(s)	239, 1307, 1569, 1849
BfrI	CTTAAG	1 cut(s)	2053
BfuAI	ACCTGC	2 cut(s)	246, 631
BglI	GCCNNNNNGGC	1 cut(s)	119
BglII	AGATCT	2 cut(s)	1187, 1412
Bme1390I	CCNGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
Bme18I	GGWCC	2 cut(s)	2177, 2710
BmeRI	GACNNNNNGTC	1 cut(s)	2473
BmeT110I	CYCGRG	1 cut(s)	1522
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	8 cut(s)	120, 304, 305, 1227, 1371, 2177, 2710, 2779
BmiI	GGNNCC	6 cut(s)	169, 306, 645, 1435, 2344, 2763
BmrFI	CCNGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
BmrI	ACTGGG	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	928
BoxI	GACNNNNGTC	1 cut(s)	2545
BpiI	GAAGAC	2 cut(s)	642, 1023
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	4 cut(s)	267, 1646, 1926, 2219
Bpu10I	CCTNAGC	1 cut(s)	1296
Bpu14I	TTCGAA	1 cut(s)	1647
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	2 cut(s)	1067, 2098
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	8 cut(s)	318, 588, 589, 711, 1071, 1374, 1687, 2220
BsaWI	WCCGGW	2 cut(s)	2764, 2910
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 280, 319, 492
Bse118I	RCCGGY	2 cut(s)	2764, 2786
Bse1I	ACTGG	3 cut(s)	424, 923, 2662
Bse3DI	GCAATG	5 cut(s)	337, 1541, 1786, 2511, 2589
BseBI	CCWGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
BseDI	CCNNGG	8 cut(s)	318, 588, 589, 711, 1071, 1374, 1687, 2220
BseGI	GGATG	8 cut(s)	135, 607, 1384, 1860, 1883, 2294, 2414, 2699
BseLI	CCNNNNNNNGG	4 cut(s)	226, 280, 319, 492
BseMI	GCAATG	5 cut(s)	337, 1541, 1786, 2511, 2589
BseMII	CTCAG	7 cut(s)	542, 591, 781, 1287, 1347, 1962, 2811
BseNI	ACTGG	3 cut(s)	424, 923, 2662
BseSI	GKGCMC	3 cut(s)	233, 308, 1072
BseYI	CCCAGC	1 cut(s)	566
BsgI	GTGCAG	4 cut(s)	1692, 1910, 2368, 2811
Bsh1236I	CGCG	2 cut(s)	69, 2310
BshNI	GGYRCC	3 cut(s)	643, 2342, 2761
BshTI	ACCGGT	1 cut(s)	2764
BsiHKAI	GWGCWC	4 cut(s)	687, 1977, 2017, 2654
BsiHKCI	CYCGRG	1 cut(s)	1522
BsiSI	CCGG	3 cut(s)	2765, 2787, 2911
BslFI	GGGAC	1 cut(s)	2553
BslI	CCNNNNNNNGG	4 cut(s)	226, 280, 319, 492
BsmAI	GTCTC	1 cut(s)	771
BsmBI	CGTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	2553
BsmI	GAATGC	1 cut(s)	2123
BsoBI	CYCGRG	1 cut(s)	1522
Bsp119I	TTCGAA	1 cut(s)	1647
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	8 cut(s)	233, 308, 687, 1072, 1848, 1977, 2017, 2654
Bsp1407I	TGTACA	1 cut(s)	1201
Bsp143I	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
BspACI	CCGC	6 cut(s)	67, 114, 929, 2217, 2310, 2708
BspCNI	CTCAG	7 cut(s)	543, 590, 780, 1288, 1346, 1963, 2810
BspFNI	CGCG	2 cut(s)	69, 2310
BspHI	TCATGA	1 cut(s)	2113
BspLI	GGNNCC	6 cut(s)	169, 306, 645, 1435, 2344, 2763
BspMAI	CTGCAG	2 cut(s)	243, 1573
BspMI	ACCTGC	2 cut(s)	246, 631
BspPI	GGATC	3 cut(s)	211, 1457, 1678
BspQI	GCTCTTC	1 cut(s)	2724
BspT104I	TTCGAA	1 cut(s)	1647
BspT107I	GGYRCC	3 cut(s)	643, 2342, 2761
BspTI	CTTAAG	1 cut(s)	2053
BsrDI	GCAATG	5 cut(s)	337, 1541, 1786, 2511, 2589
BsrFI	RCCGGY	2 cut(s)	2764, 2786
BsrGI	TGTACA	1 cut(s)	1201
BsrI	ACTGG	3 cut(s)	424, 923, 2662
BssAI	RCCGGY	2 cut(s)	2764, 2786
BssECI	CCNNGG	8 cut(s)	318, 588, 589, 711, 1071, 1374, 1687, 2220
BssMI	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
BssNAI	GTATAC	1 cut(s)	509
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	2 cut(s)	1374, 1687
Bst1107I	GTATAC	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
Bst4CI	ACNGT	7 cut(s)	358, 992, 1357, 1485, 1864, 1988, 2531
Bst6I	CTCTTC	5 cut(s)	1625, 1709, 2163, 2724, 2863
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	2053
BstAPI	GCANNNNNTGC	2 cut(s)	1247, 2411
BstAUI	TGTACA	1 cut(s)	1201
BstBAI	YACGTR	2 cut(s)	1067, 2098
BstBI	TTCGAA	1 cut(s)	1647
BstC8I	GCNNGC	7 cut(s)	27, 805, 828, 964, 1923, 2008, 2214
BstF5I	GGATG	8 cut(s)	135, 607, 1384, 1860, 1883, 2294, 2414, 2699
BstFNI	CGCG	2 cut(s)	69, 2310
BstHHI	GCGC	2 cut(s)	25, 874
BstKTI	GATC	7 cut(s)	219, 661, 1190, 1415, 1452, 1686, 2269
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
BstNI	CCWGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
BstNSI	RCATGY	2 cut(s)	2216, 2854
BstPAI	GACNNNNGTC	1 cut(s)	2545
BstSCI	CCNGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
BstSFI	CTRYAG	4 cut(s)	239, 1307, 1569, 1849
BstSLI	GKGCMC	3 cut(s)	233, 308, 1072
BstUI	CGCG	2 cut(s)	69, 2310
BstV2I	GAAGAC	2 cut(s)	642, 1023
BstX2I	RGATCY	4 cut(s)	216, 1187, 1412, 1449
BstXI	CCANNNNNNTGG	2 cut(s)	326, 1251
BstYI	RGATCY	4 cut(s)	216, 1187, 1412, 1449
BstZ17I	GTATAC	1 cut(s)	509
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	8 cut(s)	135, 607, 1384, 1860, 1883, 2294, 2414, 2699
BtsI	GCAGTG	1 cut(s)	1578
BtsIMutI	CAGTG	5 cut(s)	89, 997, 1578, 2506, 2536
BveI	ACCTGC	2 cut(s)	246, 631
Cac8I	GCNNGC	7 cut(s)	27, 805, 828, 964, 1923, 2008, 2214
CaiI	CAGNNNCTG	1 cut(s)	88
CciI	TCATGA	1 cut(s)	2113
CfoI	GCGC	2 cut(s)	25, 874
Cfr10I	RCCGGY	2 cut(s)	2764, 2786
Cfr13I	GGNCC	8 cut(s)	120, 304, 305, 1227, 1371, 2177, 2710, 2779
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	5 cut(s)	1202, 2072, 2281, 2343, 2762
CspAI	ACCGGT	1 cut(s)	2764
CviQI	GTAC	5 cut(s)	1202, 2072, 2281, 2343, 2762
DpnI	GATC	7 cut(s)	218, 660, 1189, 1414, 1451, 1685, 2268
DpnII	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
DraI	TTTAAA	1 cut(s)	1827
DrdI	GACNNNNNNGTC	1 cut(s)	1360
DriI	GACNNNNNGTC	1 cut(s)	2473
DseDI	GACNNNNNNGTC	1 cut(s)	1360
EaeI	YGGCCR	2 cut(s)	1943, 2508
Eam1104I	CTCTTC	5 cut(s)	1625, 1709, 2163, 2724, 2863
Eam1105I	GACNNNNNGTC	1 cut(s)	2473
EarI	CTCTTC	5 cut(s)	1625, 1709, 2163, 2724, 2863
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	2 cut(s)	1374, 1687
Eco24I	GRGCYC	3 cut(s)	308, 687, 1848
Eco47I	GGWCC	2 cut(s)	2177, 2710
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	5 cut(s)	393, 1406, 2508, 2756, 2897
Eco88I	CYCGRG	1 cut(s)	1522
EcoICRI	GAGCTC	1 cut(s)	685
EcoO109I	RGGNCCY	3 cut(s)	305, 1371, 2779
EcoRII	CCWGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
EcoT14I	CCWWGG	2 cut(s)	1374, 1687
EcoT22I	ATGCAT	1 cut(s)	2397
EcoT38I	GRGCYC	3 cut(s)	308, 687, 1848
ErhI	CCWWGG	2 cut(s)	1374, 1687
Esp3I	CGTCTC	1 cut(s)	771
FalI	AAGNNNNNCTT	8 cut(s)	735, 767, 1199, 1231, 1706, 1738, 2733, 2765
FaqI	GGGAC	1 cut(s)	2553
FblI	GTMKAC	2 cut(s)	508, 694
FokI	GGATG	8 cut(s)	122, 594, 1391, 1867, 1870, 2281, 2401, 2706
FriOI	GRGCYC	3 cut(s)	308, 687, 1848
FspBI	CTAG	7 cut(s)	1368, 1473, 1731, 1746, 1952, 2075, 2270
GlaI	GCGC	2 cut(s)	24, 873
GsaI	CCCAGC	1 cut(s)	570
GsuI	CTGGAG	4 cut(s)	267, 1646, 1926, 2219
HapII	CCGG	3 cut(s)	2765, 2787, 2911
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	25, 874
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	2 cut(s)	23, 872
HinP1I	GCGC	2 cut(s)	23, 872
HincII	GTYRAC	1 cut(s)	695
HindII	GTYRAC	1 cut(s)	695
HindIII	AAGCTT	1 cut(s)	1208
HpaII	CCGG	3 cut(s)	2765, 2787, 2911
HphI	GGTGA	5 cut(s)	133, 146, 302, 1363, 2458
Hpy166II	GTNNAC	6 cut(s)	34, 509, 695, 1365, 2283, 2596
Hpy8I	GTNNAC	6 cut(s)	34, 509, 695, 1365, 2283, 2596
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	8 cut(s)	10, 284, 1249, 1307, 1381, 1596, 2357, 2483
HpyCH4III	ACNGT	7 cut(s)	358, 992, 1357, 1485, 1864, 1988, 2531
HpyCH4IV	ACGT	4 cut(s)	36, 1066, 1425, 2097
HpySE526I	ACGT	4 cut(s)	36, 1066, 1425, 2097
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	2 cut(s)	23, 872
KpnI	GGTACC	2 cut(s)	2346, 2765
Kzo9I	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
LguI	GCTCTTC	1 cut(s)	2724
LmnI	GCTCC	5 cut(s)	173, 248, 838, 1439, 2402
MaeI	CTAG	7 cut(s)	1368, 1473, 1731, 1746, 1952, 2075, 2270
MaeII	ACGT	4 cut(s)	36, 1066, 1425, 2097
MaeIII	GTNAC	9 cut(s)	898, 1062, 1351, 1718, 2159, 2188, 2252, 2586, 2846
MalI	GATC	7 cut(s)	218, 660, 1189, 1414, 1451, 1685, 2268
MboI	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
MfeI	CAATTG	3 cut(s)	666, 1245, 2621
MflI	RGATCY	4 cut(s)	216, 1187, 1412, 1449
MhlI	GDGCHC	8 cut(s)	233, 308, 687, 1072, 1848, 1977, 2017, 2654
MlsI	TGGCCA	2 cut(s)	1945, 2510
MluNI	TGGCCA	2 cut(s)	1945, 2510
MlyI	GAGTC	6 cut(s)	65, 389, 700, 926, 1642, 2462
MmeI	TCCRAC	1 cut(s)	2445
Mox20I	TGGCCA	2 cut(s)	1945, 2510
Mph1103I	ATGCAT	1 cut(s)	2397
MroXI	GAANNNNTTC	3 cut(s)	750, 1211, 1961
MscI	TGGCCA	2 cut(s)	1945, 2510
MslI	CAYNNNNRTG	4 cut(s)	2248, 2390, 2601, 2612
Msp20I	TGGCCA	2 cut(s)	1945, 2510
MspA1I	CMGCKG	1 cut(s)	2708
MspCI	CTTAAG	1 cut(s)	2053
MspI	CCGG	3 cut(s)	2765, 2787, 2911
MspR9I	CCNGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
MunI	CAATTG	3 cut(s)	666, 1245, 2621
Mva1269I	GAATGC	1 cut(s)	2123
MvaI	CCWGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
MvnI	CGCG	2 cut(s)	69, 2310
NdeII	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
NlaIV	GGNNCC	6 cut(s)	169, 306, 645, 1435, 2344, 2763
NmeAIII	GCCGAG	1 cut(s)	2036
NmuCI	GTSAC	6 cut(s)	898, 1351, 2159, 2252, 2586, 2846
NsiI	ATGCAT	1 cut(s)	2397
NspI	RCATGY	2 cut(s)	2216, 2854
NspV	TTCGAA	1 cut(s)	1647
OliI	CACNNNNGTG	1 cut(s)	2601
PaeI	GCATGC	1 cut(s)	2216
PaeR7I	CTCGAG	1 cut(s)	1522
PagI	TCATGA	1 cut(s)	2113
PaqCI	CACCTGC	1 cut(s)	631
PasI	CCCWGGG	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	2724
PcsI	WCGNNNNNNNCGW	1 cut(s)	2314
PctI	GAATGC	1 cut(s)	2123
PdmI	GAANNNNTTC	3 cut(s)	750, 1211, 1961
PfeI	GAWTC	7 cut(s)	43, 202, 380, 583, 1082, 1147, 2681
PflFI	GACNNNGTC	1 cut(s)	1800
PinAI	ACCGGT	1 cut(s)	2764
PleI	GAGTC	6 cut(s)	64, 389, 699, 926, 1641, 2462
PpsI	GAGTC	6 cut(s)	64, 389, 699, 926, 1641, 2462
Ppu21I	YACGTR	2 cut(s)	1067, 2098
PshAI	GACNNNNGTC	1 cut(s)	2545
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
PspN4I	GGNNCC	6 cut(s)	169, 306, 645, 1435, 2344, 2763
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	8 cut(s)	120, 304, 305, 1227, 1371, 2177, 2710, 2779
PspXI	VCTCGAGB	1 cut(s)	1522
PstI	CTGCAG	2 cut(s)	243, 1573
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	4 cut(s)	216, 1187, 1412, 1449
PsyI	GACNNNGTC	1 cut(s)	1800
RsaI	GTAC	5 cut(s)	1203, 2073, 2282, 2344, 2763
RsaNI	GTAC	5 cut(s)	1202, 2072, 2281, 2343, 2762
RseI	CAYNNNNRTG	4 cut(s)	2248, 2390, 2601, 2612
SacI	GAGCTC	1 cut(s)	687
SalI	GTCGAC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	2724
Sau3AI	GATC	7 cut(s)	216, 658, 1187, 1412, 1449, 1683, 2266
Sau96I	GGNCC	8 cut(s)	120, 304, 305, 1227, 1371, 2177, 2710, 2779
SchI	GAGTC	6 cut(s)	65, 389, 700, 926, 1642, 2462
ScrFI	CCNGG	7 cut(s)	246, 320, 590, 713, 1073, 2453, 2714
SduI	GDGCHC	8 cut(s)	233, 308, 687, 1072, 1848, 1977, 2017, 2654
SfcI	CTRYAG	4 cut(s)	239, 1307, 1569, 1849
Sfr274I	CTCGAG	1 cut(s)	1522
SfuI	TTCGAA	1 cut(s)	1647
SgrAI	CRCCGGYG	1 cut(s)	2786
SinI	GGWCC	2 cut(s)	2177, 2710
SlaI	CTCGAG	1 cut(s)	1522
SmiMI	CAYNNNNRTG	4 cut(s)	2248, 2390, 2601, 2612
SmlI	CTYRAG	3 cut(s)	464, 1522, 2053
SmoI	CTYRAG	3 cut(s)	464, 1522, 2053
SphI	GCATGC	1 cut(s)	2216
SsiI	CCGC	6 cut(s)	67, 114, 929, 2217, 2310, 2708
SspMI	CTAG	7 cut(s)	1368, 1473, 1731, 1746, 1952, 2075, 2270
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	7 cut(s)	244, 318, 588, 711, 1071, 2451, 2712
StyI	CCWWGG	2 cut(s)	1374, 1687
TaaI	ACNGT	7 cut(s)	358, 992, 1357, 1485, 1864, 1988, 2531
TaiI	ACGT	4 cut(s)	39, 1069, 1428, 2100
TaqI	TCGA	7 cut(s)	177, 183, 398, 562, 694, 1523, 1647
TatI	WGTACW	2 cut(s)	1201, 2071
TauI	GCSGC	2 cut(s)	116, 2219
TfiI	GAWTC	7 cut(s)	43, 202, 380, 583, 1082, 1147, 2681
TscAI	CASTG	5 cut(s)	89, 997, 1578, 2506, 2536
TseFI	GTSAC	6 cut(s)	898, 1351, 2159, 2252, 2586, 2846
Tsp45I	GTSAC	6 cut(s)	898, 1351, 2159, 2252, 2586, 2846
TspDTI	ATGAA	9 cut(s)	29, 534, 642, 727, 1395, 1596, 2130, 2232, 2484
TspGWI	ACGGA	2 cut(s)	1876, 2879
TspRI	CASTG	5 cut(s)	89, 997, 1578, 2506, 2536
Tth111I	GACNNNGTC	1 cut(s)	1800
Vha464I	CTTAAG	1 cut(s)	2053
VpaK11BI	GGWCC	2 cut(s)	2177, 2710
XapI	RAATTY	7 cut(s)	534, 747, 1591, 1821, 2153, 2287, 2894
XceI	RCATGY	2 cut(s)	2216, 2854
XcmI	CCANNNNNNNNNTGG	2 cut(s)	915, 1372
XhoI	CTCGAG	1 cut(s)	1522
XmiI	GTMKAC	2 cut(s)	508, 694
XmnI	GAANNNNTTC	3 cut(s)	750, 1211, 1961
XspI	CTAG	7 cut(s)	1368, 1473, 1731, 1746, 1952, 2075, 2270
Zsp2I	ATGCAT	1 cut(s)	2397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.