Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008022

Physical Location & Seq

Genomic Coordinates Reverse (-)

62919 .. 83211

Gene Structure 20293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1000300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGGAATTGCAAATGAAGGTGGCGCAGGCGGTTCACGTACTAAATCACGATACAGAGTCGTGCAACCGCGTGGCGGCAAATCAATGGCTGGTTCAATTTCAGCAGACCGACGCCGCTTGGGAGGTCGCCACCTCAATACTCACCACCGATTTTCACCACTCCGTCGTCTCTGATTACGAGGTCGAGTTCTTCGCTGCCCAGATTCTCAAACGGAAGATCCAAAACGAGGGCTGTTACCTGCAATCTAGAGCCAAAGATGCTTTGCTAAATGCCCTTCTTGTTGCTGCTAAAAGATTTAGTTCTGGCCCTCATCAGCTTTTGACACAAATTTGCCTTGCACTGTCTGCACTTATACTGCGAGCTGTTGAGCATGGAAAACCTGTTGAGCAACTATTTTATAGTCTTCAGAATCTACAGACTCAGGTTGATGGAAATGTTGCTGTGCTGGAGATGCTTACTGTTTTACCAGAGGAAATTTTAGACAACCAAAATGCTGACTCTAAAATAAGTTCAGCTGACAGAAGCCAGTATGGCCAAGAGCTTCTTTCGCATACACCTATGGTTCTTGAGTTCCTACTGCAGCAATCTGAGAAAGGGTTTGATAGTGGTGTACAACTACCTGAACGGAACAGAAAGATTCTGCGTTGCTTATTAAGTTGGGTTCGAGCTGGATGTTTTTCGGAGATTCCCCATGGGTTACTACCAGCGCATCCACTCCTCAACTTTGTTTTTAATTCTTTGCAGATGTCATCTTCATTTGATTTGGCAATTGAAGTTCTTGTTGAGCTTGTGAGTCGACATGAGGGGCTGCCCCATGTTTTGTTATGCAGGGTGCATTTTCTTAAAGAAGTATTACTTCTGCCAGCTCTTAGTAACGGTGATGAGAAAGTAGTAGGTGGTCTTGCTTGCTTATTGTCAGAGATTGGCCAGGCTGCACCATCTCTTATCGTGGAAGCAAGTGCTGAGGCAGTTGCACTGGCTGATGCACTTTTGAGCTGCGTGACGTTTCCAAGTGAAGACTGGGAGATAGCAGACTCAACCGTGCAATTTTGGTCTGGTTTTGCAAGCTATATTCTTGGCCTTGATGAGGATGGTGCAAAACAGAGGAAGCAAGTGGAAGACATGTTTTTCCCTGTATTTTCAGCATTACTTGATGCGCTGTTGTTGCGTGCTCAGGTAGATGGTTCTATGTTTGATGATGAACAAGGAACACCTGAGCTGCCTGATGGTCTTCTCCACTTTAGGATGAACCTTGTTGAGCTTTTAGTGGATATATGTCATCTTTTAAGATCTGCTACATTTATTCAGAAGATTTTCTTTGGTGGGTGGGCATCTGCAAATACACCAATACCCTGGAAGGAGGTGGAAACCAAGTTATTTGCTCTTAATGTGGTTGCCGAGGTAGTCCTACAGGAGGTCCAAAACTTTGATTTTTCGGTCATCATGCAGTTGGTCACAGCGTTGGCCACTAGGCCTTTAGATGAGCTGAAGGGCATCATGTGCATTGTGTATAGATCTCTTGCAGATGTTGTTGGTTCCTATTCCAAGTGGATATCTGCTTTTCAAACAAATACTAGACCCTTACTATTATTCCTAGCAGCTGGAATATCAGAACCCCTGTCCTCGAGTTCATGTGCTTCTGCTTTGCGCAAAGTTTGTGAAGATGCTTCTGCAGTGATGTATGAACCTTTGAATTTGGAGATTCTGATGTGGATAGGAGAGGGTTTGGAGAAGAGATATTTACCTTTGGAAGATGAGGAAGAAGTTATCAGTGCTGTTAGTCTGATCCTTGGTTCTATTACTAATAAAGAAATAAAGAGCAGCTTGTTGGCTAGATTGCTTTCATCTAGCTTTGAAGCCATTGGGAAACTTGTAGATGCAGATAATAGCCACCGTCTTAGACTGAATCCTGCTACGTATACACAAATTTTGAACTCTGGTGCAAGAGGGCTTTACAGGGTGGGAACTGTATTCAGTCATCTAGCAACATCTGTCCAGAGTGGGCCTTCTGCAGATGATTGTATGCTGGCACTGTTGCAAGTTTTTTGGCCTATTCTTGAAAAACTTTTCAGGTCTGAGCACATGGAGAATGGTAATTTATCTGCAGCAGCTTGCCGTGCTCTTACACAAGCAATTCAATCATCAGGTCAACATTTCTTAAGATTACTGCCCAAAGTACTAGATTGCTTATCAACAAATTATGTCACATTCCAAAGTCATGAATGCTACATAAGAACTGCATCTGTTGTCATTGAAGAATTTGGCCATAAAGAGGAGTATGGGCCCTTGTTTGTCACCACTTTGGAGAGATTTACATACGCAGCATCGGTAATGGCTCTTAATTCTTCATACATATGTGACCAAGAGCCTGATCTAGTGGAGGCGTACACAAATTTTGCATCCACATATGTGCGCGGAACTCGTAAGGAAGTAGTGGCTGCATCTGGTACCCTTCTTGAAATTTCCTTTCAAAAGGCAGCTATATGCTGCACAGCCATGCATCGTGGTGCAGCACTTGCGTCCATGTCATACTTATCTTGTTTCTTGGAGGTGGGCCTGGCCTCTTTGTTAGATTCTTCTATGACTTGTATCTCTGAAGGATCATTCAGTGCAATGGCCATTCAAGTCATATCCCATAGTGGCGAGGGACTTGTATCAAACCTAATTTATGCTTTACTTGGTGTTTCTGCAATGTCACGGGTTCACAAATGTGCAACAATCTTGCAACAGTTGGCAGCAATATGCAGTTTAAGCGAGAGAACAACCTTGAAGGCTATTCTTTGTTGGGAATCTTTACGTGGATGGTTACGCACAGCGGCTCTTCCTGCTGAATACCTAAAGCAAGGGGAAGTTGAAACCTTAGTGCCAGTTTGGTCTAAGGCCCTTGCTGGTGCAGCTTCAGATTATATAGAGAGCAGGAGCTGTGATGGAGGACACAATAGTTACGGGCACATGCAAGGAAAAGGGGGGAGGGTTCTAAAGCGTTTAGTTCGTGAGTTTGCTGATAGCCACCGCAATGTTCCAAATTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1012

Amino Acids

111.18

Weight (kDa)

5.25

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	104 - 260	3.8e-19	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	294 - 388	7e-07	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_4th	PF24139	677 - 773	1.8e-08	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12930
fragaria_vesca	FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490
malus_domestica	MD09G1000300.v1.1
prunus_persica	Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1
pyrus_communis	pycom111g00020
rosa_chinensis	RchiOBHm_Chr2g0176781
rosa_multiflora	Rmu_sc0007886.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076140
rosa_rugosa	Rorug02G0599400.1 Rorug02G0599500.1
rosa_samantha	Rh2AG676200 Rh2BG687200 Rh2CG650800 Rh2DG701500
rosa_wichuraiana	Rw2G055480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1649
Acc36I	ACCTGC	1 cut(s)	246
Acc65I	GGTACC	1 cut(s)	2447
AccB1I	GGYRCC	1 cut(s)	2447
AccI	GTMKAC	2 cut(s)	796, 1919
AccII	CGCG	2 cut(s)	69, 2415
AciI	CCGC	7 cut(s)	29, 67, 74, 114, 2415, 2816, 3013
AclWI	GGATC	3 cut(s)	211, 1780, 2608
AcoI	YGGCCR	5 cut(s)	532, 925, 1464, 2263, 2616
AcsI	RAATTY	8 cut(s)	327, 474, 1693, 1926, 2258, 2392, 2460, 3025
AcuI	CTGAAG	4 cut(s)	389, 1508, 2616, 2883
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	5 cut(s)	39, 612, 2178, 2387, 2449
AfiI	CCNNNNNNNGG	5 cut(s)	73, 226, 1087, 1414, 2272
AflII	CTTAAG	1 cut(s)	2158
AflIII	ACRYGT	1 cut(s)	1122
AjnI	CCWGG	3 cut(s)	927, 1352, 2556
AleI	CACNNNNGTG	2 cut(s)	2408, 2709
Alw21I	GWGCWC	3 cut(s)	1174, 2082, 2122
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	3 cut(s)	211, 1780, 2608
AlwNI	CAGNNNCTG	1 cut(s)	2922
Ama87I	CYCGRG	1 cut(s)	1624
ApaI	GGGCCC	1 cut(s)	2286
ApoI	RAATTY	8 cut(s)	327, 474, 1693, 1926, 2258, 2392, 2460, 3025
Asp700I	GAANNNNTTC	1 cut(s)	1313
Asp718I	GGTACC	1 cut(s)	2447
AspLEI	GCGC	5 cut(s)	25, 709, 1159, 1650, 2415
AspS9I	GGNCC	7 cut(s)	305, 1417, 2003, 2282, 2283, 2554, 2881
AsuHPI	GGTGA	4 cut(s)	133, 146, 890, 2287
AvaI	CYCGRG	1 cut(s)	1624
AvaII	GGWCC	1 cut(s)	1417
BaeGI	GKGCMC	2 cut(s)	2286, 2952
BalI	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
BanI	GGYRCC	1 cut(s)	2447
BanII	GRGCYC	1 cut(s)	2286
BbsI	GAAGAC	4 cut(s)	395, 1023, 1125, 1223
Bbv12I	GWGCWC	3 cut(s)	1174, 2082, 2122
BbvCI	CCTCAGC	1 cut(s)	963
BccI	CCATC	7 cut(s)	422, 946, 1085, 1175, 1220, 2796, 2921
BceAI	ACGGC	1 cut(s)	2100
BciT130I	CCWGG	3 cut(s)	929, 1354, 2558
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	9 cut(s)	246, 1470, 1575, 1595, 1833, 1848, 1982, 2180, 2375
BfmI	CTRYAG	6 cut(s)	413, 578, 1409, 1671, 2010, 2103
BfrI	CTTAAG	1 cut(s)	2158
BfuAI	ACCTGC	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	531
BglII	AGATCT	2 cut(s)	1289, 1514
BmcAI	AGTACT	1 cut(s)	2178
Bme1390I	CCNGG	3 cut(s)	929, 1354, 2558
Bme18I	GGWCC	1 cut(s)	1417
BmeT110I	CYCGRG	1 cut(s)	1624
BmgT120I	GGNCC	7 cut(s)	305, 1417, 2003, 2282, 2283, 2554, 2881
BmiI	GGNNCC	3 cut(s)	1537, 2284, 2449
BmrFI	CCNGG	3 cut(s)	929, 1354, 2558
BmrI	ACTGGG	1 cut(s)	1030
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	4 cut(s)	395, 1023, 1125, 1223
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	3 cut(s)	963, 1173, 1215
BpuEI	CTTGAG	1 cut(s)	587
BsaAI	YACGTR	3 cut(s)	37, 1917, 2798
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	691, 1352, 1398, 1789
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 226, 1087, 1414, 2272
Bse1I	ACTGG	4 cut(s)	526, 981, 1025, 2867
Bse3DI	GCAATG	3 cut(s)	2619, 2697, 3022
BseBI	CCWGG	3 cut(s)	929, 1354, 2558
BseDI	CCNNGG	4 cut(s)	691, 1352, 1398, 1789
BseGI	GGATG	6 cut(s)	677, 709, 1096, 1251, 2399, 2807
BseLI	CCNNNNNNNGG	5 cut(s)	73, 226, 1087, 1414, 2272
BseMI	GCAATG	3 cut(s)	2619, 2697, 3022
BseMII	CTCAG	6 cut(s)	434, 579, 954, 1187, 1206, 2067
BseNI	ACTGG	4 cut(s)	526, 981, 1025, 2867
BseRI	GAGGAG	2 cut(s)	707, 2288
BseSI	GKGCMC	2 cut(s)	2286, 2952
BsgI	GTGCAG	5 cut(s)	330, 918, 2473, 2529, 2913
Bsh1236I	CGCG	2 cut(s)	69, 2415
BshNI	GGYRCC	1 cut(s)	2447
BsiHKAI	GWGCWC	3 cut(s)	1174, 2082, 2122
BsiHKCI	CYCGRG	1 cut(s)	1624
BslFI	GGGAC	1 cut(s)	2661
BslI	CCNNNNNNNGG	5 cut(s)	73, 226, 1087, 1414, 2272
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	2661
BsmI	GAATGC	1 cut(s)	2228
BsoBI	CYCGRG	1 cut(s)	1624
Bsp120I	GGGCCC	1 cut(s)	2282
Bsp1286I	GDGCHC	5 cut(s)	1174, 2082, 2122, 2286, 2952
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	7 cut(s)	29, 67, 74, 114, 2415, 2816, 3013
BspCNI	CTCAG	6 cut(s)	433, 580, 955, 1186, 1207, 2068
BspFNI	CGCG	2 cut(s)	69, 2415
BspHI	TCATGA	1 cut(s)	2218
BspLI	GGNNCC	3 cut(s)	1537, 2284, 2449
BspMAI	CTGCAG	4 cut(s)	582, 1675, 2014, 2107
BspMI	ACCTGC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	211, 1780, 2608
BspQI	GCTCTTC	1 cut(s)	2826
BspT107I	GGYRCC	1 cut(s)	2447
BspTI	CTTAAG	1 cut(s)	2158
BsrDI	GCAATG	3 cut(s)	2619, 2697, 3022
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	4 cut(s)	526, 981, 1025, 2867
BssECI	CCNNGG	4 cut(s)	691, 1352, 1398, 1789
BssMI	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
BssNAI	GTATAC	1 cut(s)	1920
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	691, 1789
Bst1107I	GTATAC	1 cut(s)	1920
Bst2UI	CCWGG	3 cut(s)	929, 1354, 2558
Bst4CI	ACNGT	8 cut(s)	342, 460, 878, 1042, 1895, 1969, 2034, 2730
Bst6I	CTCTTC	2 cut(s)	1727, 2826
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	2158
BstAPI	GCANNNNNTGC	3 cut(s)	344, 1500, 2516
BstAUI	TGTACA	1 cut(s)	610
BstBAI	YACGTR	3 cut(s)	37, 1917, 2798
BstC8I	GCNNGC	8 cut(s)	27, 360, 864, 907, 1066, 1170, 2028, 2113
BstDSI	CCRYGG	1 cut(s)	691
BstENI	CCTNNNNNAGG	2 cut(s)	1085, 1412
BstF5I	GGATG	6 cut(s)	677, 709, 1096, 1251, 2399, 2807
BstFNI	CGCG	2 cut(s)	69, 2415
BstHHI	GCGC	5 cut(s)	25, 709, 1159, 1650, 2415
BstKTI	GATC	6 cut(s)	219, 1292, 1517, 1788, 2374, 2603
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
BstNI	CCWGG	3 cut(s)	929, 1354, 2558
BstNSI	RCATGY	2 cut(s)	1126, 2956
BstSCI	CCNGG	3 cut(s)	927, 1352, 2556
BstSFI	CTRYAG	6 cut(s)	413, 578, 1409, 1671, 2010, 2103
BstSLI	GKGCMC	2 cut(s)	2286, 2952
BstSNI	TACGTA	1 cut(s)	1917
BstUI	CGCG	2 cut(s)	69, 2415
BstV2I	GAAGAC	4 cut(s)	395, 1023, 1125, 1223
BstX2I	RGATCY	3 cut(s)	216, 1289, 1514
BstXI	CCANNNNNNTGG	1 cut(s)	1353
BstYI	RGATCY	3 cut(s)	216, 1289, 1514
BstZ17I	GTATAC	1 cut(s)	1920
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	6 cut(s)	677, 709, 1096, 1251, 2399, 2807
BtsI	GCAGTG	1 cut(s)	1680
BtsIMutI	CAGTG	6 cut(s)	338, 974, 1680, 1777, 2030, 2614
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	8 cut(s)	27, 360, 864, 907, 1066, 1170, 2028, 2113
CaiI	CAGNNNCTG	1 cut(s)	2922
CciI	TCATGA	1 cut(s)	2218
CfoI	GCGC	5 cut(s)	25, 709, 1159, 1650, 2415
Cfr13I	GGNCC	7 cut(s)	305, 1417, 2003, 2282, 2283, 2554, 2881
CseI	GACGC	2 cut(s)	119, 2508
Csp6I	GTAC	5 cut(s)	38, 611, 2177, 2386, 2448
CviQI	GTAC	5 cut(s)	38, 611, 2177, 2386, 2448
DpnI	GATC	6 cut(s)	218, 1291, 1516, 1787, 2373, 2602
DpnII	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
EaeI	YGGCCR	5 cut(s)	532, 925, 1464, 2263, 2616
Eam1104I	CTCTTC	2 cut(s)	1727, 2826
EarI	CTCTTC	2 cut(s)	1727, 2826
Eco105I	TACGTA	1 cut(s)	1917
Eco130I	CCWWGG	2 cut(s)	691, 1789
Eco147I	AGGCCT	1 cut(s)	1474
Eco24I	GRGCYC	1 cut(s)	2286
Eco32I	GATATC	1 cut(s)	1554
Eco47I	GGWCC	1 cut(s)	1417
Eco57I	CTGAAG	4 cut(s)	389, 1508, 2616, 2883
Eco88I	CYCGRG	1 cut(s)	1624
EcoNI	CCTNNNNNAGG	2 cut(s)	1085, 1412
EcoO109I	RGGNCCY	2 cut(s)	2283, 2881
EcoRII	CCWGG	3 cut(s)	927, 1352, 2556
EcoRV	GATATC	1 cut(s)	1554
EcoT14I	CCWWGG	2 cut(s)	691, 1789
EcoT22I	ATGCAT	1 cut(s)	2502
EcoT38I	GRGCYC	1 cut(s)	2286
ErhI	CCWWGG	2 cut(s)	691, 1789
Esp3I	CGTCTC	1 cut(s)	172
FalI	AAGNNNNNCTT	8 cut(s)	528, 560, 840, 872, 1301, 1333, 1808, 1840
FaqI	GGGAC	1 cut(s)	2661
FauNDI	CATATG	2 cut(s)	2354, 2407
FblI	GTMKAC	2 cut(s)	796, 1919
FokI	GGATG	6 cut(s)	684, 696, 1103, 1258, 2386, 2814
FriOI	GRGCYC	1 cut(s)	2286
FspBI	CTAG	9 cut(s)	246, 1470, 1575, 1595, 1833, 1848, 1982, 2180, 2375
FspI	TGCGCA	1 cut(s)	1649
GlaI	GCGC	5 cut(s)	24, 708, 1158, 1649, 2414
GsuI	CTGGAG	1 cut(s)	467
HgaI	GACGC	2 cut(s)	119, 2508
HhaI	GCGC	5 cut(s)	25, 709, 1159, 1650, 2415
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	5 cut(s)	23, 707, 1157, 1648, 2413
HinP1I	GCGC	5 cut(s)	23, 707, 1157, 1648, 2413
HincII	GTYRAC	2 cut(s)	797, 2150
HindII	GTYRAC	2 cut(s)	797, 2150
HphI	GGTGA	4 cut(s)	133, 146, 890, 2287
Hpy166II	GTNNAC	7 cut(s)	34, 611, 797, 1920, 2150, 2388, 2704
Hpy188III	TCNNGA	8 cut(s)	47, 246, 566, 1996, 2057, 2219, 2456, 2993
Hpy8I	GTNNAC	7 cut(s)	34, 611, 797, 1920, 2150, 2388, 2704
Hpy99I	CGWCG	2 cut(s)	113, 167
HpyAV	CCTTC	8 cut(s)	10, 284, 1351, 1483, 2016, 2462, 2591, 2764
HpyCH4III	ACNGT	8 cut(s)	342, 460, 878, 1042, 1895, 1969, 2034, 2730
HpyCH4IV	ACGT	4 cut(s)	36, 1004, 1916, 2797
HpySE526I	ACGT	4 cut(s)	36, 1004, 1916, 2797
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	5 cut(s)	23, 707, 1157, 1648, 2413
KpnI	GGTACC	1 cut(s)	2451
Kzo9I	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
LguI	GCTCTTC	1 cut(s)	2826
LmnI	GCTCC	1 cut(s)	2919
MaeI	CTAG	9 cut(s)	246, 1470, 1575, 1595, 1833, 1848, 1982, 2180, 2375
MaeII	ACGT	4 cut(s)	36, 1004, 1916, 2797
MalI	GATC	6 cut(s)	218, 1291, 1516, 1787, 2373, 2602
MboI	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	3 cut(s)	216, 1289, 1514
MhlI	GDGCHC	5 cut(s)	1174, 2082, 2122, 2286, 2952
MlsI	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
MluNI	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
MlyI	GAGTC	5 cut(s)	65, 412, 491, 802, 1028
Mox20I	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
Mph1103I	ATGCAT	1 cut(s)	2502
MroXI	GAANNNNTTC	1 cut(s)	1313
MscI	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
MseI	TTAA	8 cut(s)	653, 732, 843, 1286, 1386, 2159, 2340, 2750
MslI	CAYNNNNRTG	6 cut(s)	2353, 2408, 2495, 2505, 2709, 3015
Msp20I	TGGCCA	5 cut(s)	534, 927, 1466, 2265, 2618
MspA1I	CMGCKG	3 cut(s)	515, 1601, 2816
MspCI	CTTAAG	1 cut(s)	2158
MspR9I	CCNGG	3 cut(s)	929, 1354, 2558
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	2228
MvaI	CCWGG	3 cut(s)	929, 1354, 2558
MvnI	CGCG	2 cut(s)	69, 2415
NcoI	CCATGG	1 cut(s)	691
NdeI	CATATG	2 cut(s)	2354, 2407
NdeII	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
NlaIV	GGNNCC	3 cut(s)	1537, 2284, 2449
NmeAIII	GCCGAG	1 cut(s)	1423
NmuCI	GTSAC	6 cut(s)	1000, 1453, 2203, 2293, 2357, 2694
NsbI	TGCGCA	1 cut(s)	1649
NsiI	ATGCAT	1 cut(s)	2502
NspI	RCATGY	2 cut(s)	1126, 2956
OliI	CACNNNNGTG	2 cut(s)	2408, 2709
PaeR7I	CTCGAG	1 cut(s)	1624
PagI	TCATGA	1 cut(s)	2218
PceI	AGGCCT	1 cut(s)	1474
PciI	ACATGT	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	2826
PctI	GAATGC	1 cut(s)	2228
PdmI	GAANNNNTTC	1 cut(s)	1313
PfeI	GAWTC	8 cut(s)	202, 409, 637, 685, 1702, 1906, 2573, 2789
PleI	GAGTC	5 cut(s)	64, 412, 491, 801, 1028
PpsI	GAGTC	5 cut(s)	64, 412, 491, 801, 1028
Ppu21I	YACGTR	3 cut(s)	37, 1917, 2798
PscI	ACATGT	1 cut(s)	1122
Psp6I	CCWGG	3 cut(s)	927, 1352, 2556
PspGI	CCWGG	3 cut(s)	927, 1352, 2556
PspN4I	GGNNCC	3 cut(s)	1537, 2284, 2449
PspOMI	GGGCCC	1 cut(s)	2282
PspPI	GGNCC	7 cut(s)	305, 1417, 2003, 2282, 2283, 2554, 2881
PspXI	VCTCGAGB	1 cut(s)	1624
PstI	CTGCAG	4 cut(s)	582, 1675, 2014, 2107
PstNI	CAGNNNCTG	1 cut(s)	2922
PsuI	RGATCY	3 cut(s)	216, 1289, 1514
PvuII	CAGCTG	2 cut(s)	515, 1601
RsaI	GTAC	5 cut(s)	39, 612, 2178, 2387, 2449
RsaNI	GTAC	5 cut(s)	38, 611, 2177, 2386, 2448
RseI	CAYNNNNRTG	6 cut(s)	2353, 2408, 2495, 2505, 2709, 3015
SalI	GTCGAC	1 cut(s)	795
SapI	GCTCTTC	1 cut(s)	2826
SaqAI	TTAA	8 cut(s)	653, 732, 843, 1286, 1386, 2159, 2340, 2750
Sau3AI	GATC	6 cut(s)	216, 1289, 1514, 1785, 2371, 2600
Sau96I	GGNCC	7 cut(s)	305, 1417, 2003, 2282, 2283, 2554, 2881
ScaI	AGTACT	1 cut(s)	2178
SchI	GAGTC	5 cut(s)	65, 412, 491, 802, 1028
ScrFI	CCNGG	3 cut(s)	929, 1354, 2558
SduI	GDGCHC	5 cut(s)	1174, 2082, 2122, 2286, 2952
SfcI	CTRYAG	6 cut(s)	413, 578, 1409, 1671, 2010, 2103
Sfr274I	CTCGAG	1 cut(s)	1624
SinI	GGWCC	1 cut(s)	1417
SlaI	CTCGAG	1 cut(s)	1624
SmiMI	CAYNNNNRTG	6 cut(s)	2353, 2408, 2495, 2505, 2709, 3015
SmlI	CTYRAG	3 cut(s)	566, 1624, 2158
SmoI	CTYRAG	3 cut(s)	566, 1624, 2158
SnaBI	TACGTA	1 cut(s)	1917
SseBI	AGGCCT	1 cut(s)	1474
SsiI	CCGC	7 cut(s)	29, 67, 74, 114, 2415, 2816, 3013
SspMI	CTAG	9 cut(s)	246, 1470, 1575, 1595, 1833, 1848, 1982, 2180, 2375
StuI	AGGCCT	1 cut(s)	1474
StyD4I	CCNGG	3 cut(s)	927, 1352, 2556
StyI	CCWWGG	2 cut(s)	691, 1789
TaaI	ACNGT	8 cut(s)	342, 460, 878, 1042, 1895, 1969, 2034, 2730
TaiI	ACGT	4 cut(s)	39, 1007, 1919, 2800
TaqI	TCGA	4 cut(s)	183, 664, 796, 1625
TaqII	GACCGA	2 cut(s)	122, 1426
TatI	WGTACW	2 cut(s)	610, 2176
TauI	GCSGC	3 cut(s)	77, 116, 2819
TfiI	GAWTC	8 cut(s)	202, 409, 637, 685, 1702, 1906, 2573, 2789
Tru1I	TTAA	8 cut(s)	653, 732, 843, 1286, 1386, 2159, 2340, 2750
Tru9I	TTAA	8 cut(s)	653, 732, 843, 1286, 1386, 2159, 2340, 2750
TscAI	CASTG	6 cut(s)	345, 981, 1680, 1777, 2037, 2614
TseFI	GTSAC	6 cut(s)	1000, 1453, 2203, 2293, 2357, 2694
Tsp45I	GTSAC	6 cut(s)	1000, 1453, 2203, 2293, 2357, 2694
TspDTI	ATGAA	9 cut(s)	29, 744, 1215, 1262, 1620, 1698, 1833, 2235, 2337
TspGWI	ACGGA	3 cut(s)	151, 226, 640
TspRI	CASTG	6 cut(s)	345, 981, 1680, 1777, 2037, 2614
Vha464I	CTTAAG	1 cut(s)	2158
VpaK11BI	GGWCC	1 cut(s)	1417
XagI	CCTNNNNNAGG	2 cut(s)	1085, 1412
XapI	RAATTY	8 cut(s)	327, 474, 1693, 1926, 2258, 2392, 2460, 3025
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	2 cut(s)	1126, 2956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	1624
XmiI	GTMKAC	2 cut(s)	796, 1919
XmnI	GAANNNNTTC	1 cut(s)	1313
XspI	CTAG	9 cut(s)	246, 1470, 1575, 1595, 1833, 1848, 1982, 2180, 2375
ZrmI	AGTACT	1 cut(s)	2178
Zsp2I	ATGCAT	1 cut(s)	2502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.