pycom111g00020

Exportin 1-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
35655 .. 41764
6110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00020.1

Sequence Viewer

Length: 1497 bp
ATGGAATTGCAAATGAAGGTGGCGCAGGCGGTTCACGTACTAAATCACGATACAGAGTCGTGCAACCGCGTGGCGGCAAATCAATGGCTGGTTCAATTTCAGCAGACCGACGCCGCTTGGGAGGTCGCCACCTCAATCCTCACCACCGATTTTCACCACTCCGTCGTCTCCGATTACGAGGTCGAGTTCTTCGCTGCCCAGATTCTCAAACGGAAGATCCAAAACGAGGGCTGTTACCTGCAATCTAGAGCCAAAGATGCTTTGCTAAATGCCCTTCTTGTTGCTGCTAAAAGATTTAGTTCTGGCCCTCATCAGCTTTTGACACAAATTTGCCTTGCACTGTCTGCACTTATACTGCGAGCTGTTGAGCATGGAAAACCTGTTGAGCAACTATTTTATAGTCTTCAGAATCTACAGACTCAGGTTGATGGAAATGTTGCTGTTCTGGAGATGCTTACTGTTTTACCAGAGGAAGTTTTAGACAACCAAAATGCTGACTCAAAAATAAGTTCAGCTGACAGAAGCCAGTATGGCCAAGAGATTCTTTCGCATACACCTATGGTTCTTGAGTTCCTACTGCAGCAATCTGAGAAAGGGTTTGATAGTGGTGTACAACTACATGAACGGAACAGAAAGATTCTGCGTTGCTTATTAAGTTGGGTTCGAACTGGATGTTTTTCGGAGATTCCCCATGGGTTACTACCAGCGCATCCGCTTCTCAACTTTGTTTTTAATTCTTTGCAGATGTCATCTTCATTTGATTTGGCAATTGAAGTTCTTGTTGAGCTCGTGAGTCGACATGAGGGGCTGCCCCATGTTTTGTTATGCAGGGTGCATTTTCTTAAAGAAGTATTACTTCTGCCAGCTCTTAGTAATGGTGATGAGAAAGTAGTAGGTGGTCTTGCTTGCTTATTGTCAGAGATTGGCCAGGCTGCACCATCTCTTATCGTGGAAGCAAGTGCTGAGGCAGTTGCACTGGCTGATGCACTTTTGAGCTGCGTGACGTTTCCAAGTGAAGACTGGGAGATAGCAGACTCAACCTTGCAATTTTGGTCTGGTTTTGCAAGCTATATTCTTGGCCTTGATGAGGATGGTGCAAAACAGAGGAAGCAAGTGGAAGAAATGTTTTTCCCTGTATTTTCAGCATTACTTGATGCGCTGTTGTTGCGTGCTCAGGTAGATGGTTCTATGTTTGATGATGAACAAGGAACACCTGAGCTGCCTGATGGTCTTCTCCACTTTAGGGTGAACCTTGTTGAGCTTTTAGTGGATATATGTCATCTTTTAAGATCTGCTACATTTATTCAGAAGCTTTTCTTTGGTGGTTGGGCATCTGCAAATACACCAATACCCTGGAAGGAGGTGGAAACCAAGTTATTTGCTCTTAATGTGAATCTTTCACTTCAACAAGAACTCACAAGTTTTAGAACTTTGGGACCTCCTTTCCCAGCTACTGGATTAGTTGAATTGGGAATTGGAAATACTAAAAACACTTAA

Protein Analysis

499

Amino Acids

55.14

Weight (kDa)

4.95

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xpo1 PF08389 104 - 260 3e-19 Exportin 1-like protein
TPR_TNPO3_IPO13_2nd PF24138 294 - 388 6.5e-08 Transportin-3/Importin-13 second TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 69
AciI CCGC 5 cut(s) 29, 67, 74, 114, 713
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 2 cut(s) 532, 925
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 39, 612
AfiI CCNNNNNNNGG 5 cut(s) 73, 226, 1087, 1243, 1454
AgsI TTSAA 4 cut(s) 95, 773, 1406, 1466
AjnI CCWGG 2 cut(s) 927, 1352
AjuI GAANNNNNNNTTGG 2 cut(s) 1458, 1490
Alw21I GWGCWC 2 cut(s) 789, 1174
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 1454
AoxI GGCC 4 cut(s) 304, 532, 925, 1078
ApeKI GCWGC 7 cut(s) 194, 284, 580, 808, 932, 996, 1219
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 1313
AspLEI GCGC 3 cut(s) 25, 709, 1159
AspS9I GGNCC 2 cut(s) 305, 1436
AsuHPI GGTGA 4 cut(s) 133, 146, 890, 1258
AsuII TTCGAA 1 cut(s) 664
AvaII GGWCC 1 cut(s) 1436
BalI TGGCCA 2 cut(s) 534, 927
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 1 cut(s) 788
BbsI GAAGAC 3 cut(s) 395, 1023, 1223
Bbv12I GWGCWC 2 cut(s) 789, 1174
BbvCI CCTCAGC 1 cut(s) 963
BbvI GCAGC 7 cut(s) 181, 271, 592, 795, 919, 983, 1206
BccI CCATC 5 cut(s) 422, 946, 1085, 1175, 1220
BciT130I CCWGG 2 cut(s) 929, 1354
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 2 cut(s) 413, 578
BfuAI ACCTGC 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 531
BglII AGATCT 1 cut(s) 1289
BisI GCNGC 9 cut(s) 75, 114, 195, 285, 581, 809, 933, 997, 1220
BlsI GCNGC 9 cut(s) 76, 115, 196, 286, 582, 810, 934, 998, 1221
Bme1390I CCNGG 2 cut(s) 929, 1354
Bme18I GGWCC 1 cut(s) 1436
BmgT120I GGNCC 2 cut(s) 305, 1436
BmiI GGNNCC 1 cut(s) 1437
BmrFI CCNGG 2 cut(s) 929, 1354
BmrI ACTGGG 1 cut(s) 1030
BmsI GCATC 6 cut(s) 247, 441, 718, 973, 1144, 1340
BmuI ACTGGG 1 cut(s) 1030
BpiI GAAGAC 3 cut(s) 395, 1023, 1223
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 3 cut(s) 963, 1173, 1215
Bpu14I TTCGAA 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 691, 1352
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 226, 1087, 1243, 1454
Bse1I ACTGG 5 cut(s) 526, 673, 981, 1025, 1459
BseBI CCWGG 2 cut(s) 929, 1354
BseDI CCNNGG 2 cut(s) 691, 1352
BseGI GGATG 3 cut(s) 677, 709, 1096
BseLI CCNNNNNNNGG 5 cut(s) 73, 226, 1087, 1243, 1454
BseMII CTCAG 5 cut(s) 434, 579, 954, 1187, 1206
BseNI ACTGG 5 cut(s) 526, 673, 981, 1025, 1459
BseXI GCAGC 7 cut(s) 181, 271, 592, 795, 919, 983, 1206
BseYI CCCAGC 1 cut(s) 1447
BsgI GTGCAG 2 cut(s) 330, 918
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 306, 534, 927, 1080
BsiHKAI GWGCWC 2 cut(s) 789, 1174
BslFI GGGAC 1 cut(s) 1449
BslI CCNNNNNNNGG 5 cut(s) 73, 226, 1087, 1243, 1454
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 1449
BsnI GGCC 4 cut(s) 306, 534, 927, 1080
Bsp119I TTCGAA 1 cut(s) 664
Bsp1286I GDGCHC 2 cut(s) 789, 1174
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 2 cut(s) 216, 1289
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 5 cut(s) 29, 67, 74, 114, 713
BspANI GGCC 4 cut(s) 306, 534, 927, 1080
BspCNI CTCAG 5 cut(s) 433, 580, 955, 1186, 1207
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 1437
BspMAI CTGCAG 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 610
BsrI ACTGG 5 cut(s) 526, 673, 981, 1025, 1459
BssECI CCNNGG 2 cut(s) 691, 1352
BssMI GATC 2 cut(s) 216, 1289
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 691
Bst2BI CACGAG 1 cut(s) 788
Bst2UI CCWGG 2 cut(s) 929, 1354
Bst4CI ACNGT 2 cut(s) 342, 460
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 664
BstC8I GCNNGC 6 cut(s) 27, 360, 864, 907, 1066, 1170
BstDEI CTNAG 6 cut(s) 420, 588, 869, 963, 1173, 1215
BstDSI CCRYGG 1 cut(s) 691
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 677, 709, 1096
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 3 cut(s) 25, 709, 1159
BstKTI GATC 2 cut(s) 219, 1292
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 216, 1289
BstMWI GCNNNNNNNGC 4 cut(s) 257, 344, 531, 1165
BstNI CCWGG 2 cut(s) 929, 1354
BstSCI CCNGG 2 cut(s) 927, 1352
BstSFI CTRYAG 2 cut(s) 413, 578
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 7 cut(s) 181, 271, 592, 795, 919, 983, 1206
BstV2I GAAGAC 3 cut(s) 395, 1023, 1223
BstX2I RGATCY 2 cut(s) 216, 1289
BstXI CCANNNNNNTGG 1 cut(s) 1353
BstYI RGATCY 2 cut(s) 216, 1289
BsuRI GGCC 4 cut(s) 306, 534, 927, 1080
BtgI CCRYGG 1 cut(s) 691
BtsCI GGATG 3 cut(s) 677, 709, 1096
BtsIMutI CAGTG 2 cut(s) 338, 974
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 6 cut(s) 27, 360, 864, 907, 1066, 1170
CaiI CAGNNNCTG 1 cut(s) 1454
CfoI GCGC 3 cut(s) 25, 709, 1159
Cfr13I GGNCC 2 cut(s) 305, 1436
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 38, 611
CviAII CATG 5 cut(s) 371, 620, 692, 800, 815
CviQI GTAC 2 cut(s) 38, 611
DdeI CTNAG 6 cut(s) 420, 588, 869, 963, 1173, 1215
DpnI GATC 2 cut(s) 218, 1291
DpnII GATC 2 cut(s) 216, 1289
EaeI YGGCCR 2 cut(s) 532, 925
Ecl136II GAGCTC 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 1436
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 787
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 1436
EcoRII CCWGG 2 cut(s) 927, 1352
EcoT14I CCWWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 5 cut(s) 374, 623, 695, 803, 818
FalI AAGNNNNNCTT 6 cut(s) 528, 560, 840, 872, 1301, 1333
FaqI GGGAC 1 cut(s) 1449
FatI CATG 5 cut(s) 370, 619, 691, 799, 814
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 9 cut(s) 75, 114, 195, 285, 581, 809, 933, 997, 1220
FokI GGATG 3 cut(s) 684, 696, 1103
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 9 cut(s) 75, 114, 195, 285, 581, 809, 933, 997, 1220
FspBI CTAG 1 cut(s) 246
GlaI GCGC 3 cut(s) 24, 708, 1158
GluI GCNGC 9 cut(s) 75, 114, 195, 285, 581, 809, 933, 997, 1220
GsaI CCCAGC 1 cut(s) 1451
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 4 cut(s) 306, 534, 927, 1080
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 25, 709, 1159
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 5 cut(s) 374, 623, 695, 803, 818
Hin6I GCGC 3 cut(s) 23, 707, 1157
HinP1I GCGC 3 cut(s) 23, 707, 1157
HincII GTYRAC 1 cut(s) 797
HindII GTYRAC 1 cut(s) 797
HindIII AAGCTT 1 cut(s) 1310
HphI GGTGA 4 cut(s) 133, 146, 890, 1258
Hpy166II GTNNAC 4 cut(s) 34, 611, 797, 1249
Hpy188I TCNGA 6 cut(s) 172, 408, 589, 682, 919, 1308
Hpy188III TCNNGA 5 cut(s) 47, 246, 446, 566, 790
Hpy8I GTNNAC 4 cut(s) 34, 611, 797, 1249
Hpy99I CGWCG 2 cut(s) 113, 167
HpyAV CCTTC 3 cut(s) 10, 284, 1351
HpyCH4III ACNGT 2 cut(s) 342, 460
HpyCH4IV ACGT 2 cut(s) 36, 1004
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 344, 531, 1165
HpyF3I CTNAG 6 cut(s) 420, 588, 869, 963, 1173, 1215
HpySE526I ACGT 2 cut(s) 36, 1004
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 5 cut(s) 374, 623, 695, 803, 818
HspAI GCGC 3 cut(s) 23, 707, 1157
Kzo9I GATC 2 cut(s) 216, 1289
Lsp1109I GCAGC 7 cut(s) 181, 271, 592, 795, 919, 983, 1206
LweI GCATC 6 cut(s) 247, 441, 718, 973, 1144, 1340
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 36, 1004
MaeIII GTNAC 3 cut(s) 233, 696, 1000
MalI GATC 2 cut(s) 218, 1291
MboI GATC 2 cut(s) 216, 1289
MboII GAAGA 7 cut(s) 181, 226, 395, 744, 1028, 1130, 1223
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 2 cut(s) 216, 1289
MhlI GDGCHC 2 cut(s) 789, 1174
MlsI TGGCCA 2 cut(s) 534, 927
MluCI AATT 8 cut(s) 5, 95, 327, 733, 768, 1046, 1466, 1473
MluNI TGGCCA 2 cut(s) 534, 927
MlyI GAGTC 5 cut(s) 65, 412, 491, 802, 1028
Mox20I TGGCCA 2 cut(s) 534, 927
MroXI GAANNNNTTC 1 cut(s) 1313
MscI TGGCCA 2 cut(s) 534, 927
MseI TTAA 6 cut(s) 653, 732, 843, 1286, 1386, 1495
Msp20I TGGCCA 2 cut(s) 534, 927
MspA1I CMGCKG 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 929, 1354
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 2 cut(s) 929, 1354
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 257, 344, 531, 1165
NcoI CCATGG 1 cut(s) 691
NdeII GATC 2 cut(s) 216, 1289
NlaIII CATG 5 cut(s) 374, 623, 695, 803, 818
NlaIV GGNNCC 1 cut(s) 1437
NmuCI GTSAC 1 cut(s) 1000
NspV TTCGAA 1 cut(s) 664
PdmI GAANNNNTTC 1 cut(s) 1313
PfeI GAWTC 6 cut(s) 202, 409, 541, 637, 685, 1393
PflMI CCANNNNNTGG 1 cut(s) 1454
PkrI GCNGC 9 cut(s) 76, 115, 196, 286, 582, 810, 934, 998, 1221
PleI GAGTC 5 cut(s) 64, 412, 491, 801, 1028
PpsI GAGTC 5 cut(s) 64, 412, 491, 801, 1028
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 1436
Psp124BI GAGCTC 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 1436
Psp6I CCWGG 2 cut(s) 927, 1352
PspFI CCCAGC 1 cut(s) 1447
PspGI CCWGG 2 cut(s) 927, 1352
PspN4I GGNNCC 1 cut(s) 1437
PspPI GGNCC 2 cut(s) 305, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PstI CTGCAG 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 1454
PsuI RGATCY 2 cut(s) 216, 1289
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 39, 612
RsaNI GTAC 2 cut(s) 38, 611
SacI GAGCTC 1 cut(s) 789
SalI GTCGAC 1 cut(s) 795
SaqAI TTAA 6 cut(s) 653, 732, 843, 1286, 1386, 1495
SatI GCNGC 9 cut(s) 75, 114, 195, 285, 581, 809, 933, 997, 1220
Sau3AI GATC 2 cut(s) 216, 1289
Sau96I GGNCC 2 cut(s) 305, 1436
SchI GAGTC 5 cut(s) 65, 412, 491, 802, 1028
ScrFI CCNGG 2 cut(s) 929, 1354
SduI GDGCHC 2 cut(s) 789, 1174
SfaNI GCATC 6 cut(s) 247, 441, 718, 973, 1144, 1340
SfcI CTRYAG 2 cut(s) 413, 578
SfuI TTCGAA 1 cut(s) 664
SinI GGWCC 1 cut(s) 1436
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 8 cut(s) 5, 95, 327, 733, 768, 1046, 1466, 1473
SsiI CCGC 5 cut(s) 29, 67, 74, 114, 713
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 2 cut(s) 927, 1352
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 2 cut(s) 342, 460
TaiI ACGT 2 cut(s) 39, 1007
TaqI TCGA 3 cut(s) 183, 664, 796
TaqII GACCGA 1 cut(s) 122
TasI AATT 8 cut(s) 5, 95, 327, 733, 768, 1046, 1466, 1473
TatI WGTACW 1 cut(s) 610
TauI GCSGC 2 cut(s) 77, 116
TfiI GAWTC 6 cut(s) 202, 409, 541, 637, 685, 1393
Tru1I TTAA 6 cut(s) 653, 732, 843, 1286, 1386, 1495
Tru9I TTAA 6 cut(s) 653, 732, 843, 1286, 1386, 1495
TscAI CASTG 2 cut(s) 345, 981
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 7 cut(s) 194, 284, 580, 808, 932, 996, 1219
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 4 cut(s) 29, 636, 744, 1215
TspGWI ACGGA 3 cut(s) 151, 226, 640
TspRI CASTG 2 cut(s) 345, 981
Van91I CCANNNNNTGG 1 cut(s) 1454
VpaK11BI GGWCC 1 cut(s) 1436
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 1017
XmiI GTMKAC 1 cut(s) 796
XmnI GAANNNNTTC 1 cut(s) 1313
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.