Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007886.1

Orthogroup ID

OG0008022

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5264

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

aatctgcagacccaggttgatggcaatgttgctgttatggagatgcttactgttttaccggaagaagttttagattcccaaaatactgactcgaaaataagtttaaccgacagaagccagtatggtcaagagcttctctcgcacacacctacggttcttgagttcctattgcaacaatctgagaaaaggtttgatggtggtatacaacaacatgaaagcaacagaaaaattctgcgttgcttactaagttgggttcgagctgggtgcttctcggagattccccagggattactaccagcacatccacttcttaactttgtcttcagttctttgcaggtgccatcttcatttgatctggcaattgaagttctcattgagcttgtgagtcgacatgaggggctaccccaggttttgttatgtagggtgcatttcattaaagaagttctacttctaccagctctcagtaatggagacgaaaaaatagtaggtggtcttgcgtgcttattgtcagagattgggcaggctgctccatctctgatagtagaagcaagtgttgaagcccttgcactggcagatgcacttttaagctgtgtgacatttccaagtgaggactgggagatagcagactcaactttgcaattttggtctgggttagcaagctatattcttggccttgatgagaacagtacaaatcaaaggaagcaagtggaagacatgtttttccctgtattttcagcactacttgacgcagttttgttacgtgcccaggtagatgattctatgttcaatgacgaccaaggaacaccggagctgcctgatggacttgtctactttagaacgaatcttgttgaactgttggtggatatttgtcagcttttaagatctgctacatttgtacagaagcttttctttggtggttgggcctctgcaaatgcaccaatagcttggaaggatgtggaaaccaagttgtttgctcttaatgtggcaagtacaacttactgctcccacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

337

Amino Acids

37.2

Weight (kDa)

4.46

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12930
fragaria_vesca	FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490
malus_domestica	MD09G1000300.v1.1
prunus_persica	Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1
pyrus_communis	pycom111g00020
rosa_chinensis	RchiOBHm_Chr2g0176781
rosa_multiflora	Rmu_sc0007886.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076140
rosa_rugosa	Rorug02G0599400.1 Rorug02G0599500.1
rosa_samantha	Rh2AG676200 Rh2BG687200 Rh2CG650800 Rh2DG701500
rosa_wichuraiana	Rw2G055480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	3 cut(s)	202, 388, 828
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	3 cut(s)	688, 897, 991
AfiI	CCNNNNNNNGG	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	4 cut(s)	365, 557, 787, 851
AjnI	CCWGG	4 cut(s)	12, 282, 405, 765
Alw26I	GTCTC	1 cut(s)	465
AoxI	GGCC	2 cut(s)	670, 921
ApeKI	GCWGC	2 cut(s)	524, 811
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	921
BaeGI	GKGCMC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	2 cut(s)	313, 717
BbvI	GCAGC	2 cut(s)	511, 798
BccI	CCATC	5 cut(s)	14, 188, 349, 538, 812
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BciT130I	CCWGG	4 cut(s)	14, 284, 407, 767
BcoDI	GTCTC	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	881
BisI	GCNGC	2 cut(s)	525, 812
BlsI	GCNGC	2 cut(s)	526, 813
Bme1390I	CCNGG	4 cut(s)	14, 284, 407, 767
BmgT120I	GGNCC	1 cut(s)	921
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	4 cut(s)	14, 284, 407, 767
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	33, 565
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	2 cut(s)	313, 717
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	761
BsaJI	CCNNGG	6 cut(s)	12, 282, 283, 405, 765, 796
BsaWI	WCCGGW	2 cut(s)	58, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	3 cut(s)	118, 573, 617
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	4 cut(s)	14, 284, 407, 767
BseDI	CCNNGG	6 cut(s)	12, 282, 283, 405, 765, 796
BseGI	GGATG	2 cut(s)	301, 958
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	171, 475
BseNI	ACTGG	3 cut(s)	118, 573, 617
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	2 cut(s)	511, 798
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	2 cut(s)	672, 923
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	59, 806
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	465
BsmBI	CGTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	672, 923
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	895
Bsp143I	GATC	2 cut(s)	352, 881
BspANI	GGCC	2 cut(s)	672, 923
BspCNI	CTCAG	2 cut(s)	172, 474
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	3 cut(s)	118, 573, 617
BssECI	CCNNGG	6 cut(s)	12, 282, 283, 405, 765, 796
BssMI	GATC	2 cut(s)	352, 881
BssNAI	GTATAC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	796
Bst1107I	GTATAC	1 cut(s)	203
Bst2UI	CCWGG	4 cut(s)	14, 284, 407, 767
Bst4CI	ACNGT	4 cut(s)	52, 154, 686, 855
BstAUI	TGTACA	1 cut(s)	895
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	499, 522, 658
BstDEI	CTNAG	3 cut(s)	180, 245, 461
BstF5I	GGATG	2 cut(s)	301, 958
BstKTI	GATC	2 cut(s)	355, 884
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	2 cut(s)	352, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 941
BstNI	CCWGG	4 cut(s)	14, 284, 407, 767
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	4 cut(s)	12, 282, 405, 765
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	511, 798
BstV2I	GAAGAC	2 cut(s)	313, 717
BstX2I	RGATCY	1 cut(s)	881
BstXI	CCANNNNNNTGG	2 cut(s)	20, 945
BstYI	RGATCY	1 cut(s)	881
BstZ17I	GTATAC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	672, 923
BtsCI	GGATG	2 cut(s)	301, 958
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	499, 522, 658
Cfr13I	GGNCC	1 cut(s)	921
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	687, 896, 990
CviAII	CATG	3 cut(s)	212, 392, 715
CviQI	GTAC	3 cut(s)	687, 896, 990
DdeI	CTNAG	3 cut(s)	180, 245, 461
DpnI	GATC	2 cut(s)	354, 883
DpnII	GATC	2 cut(s)	352, 881
Eco130I	CCWWGG	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	12, 282, 405, 765
EcoT14I	CCWWGG	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	3 cut(s)	215, 395, 718
FaiI	YATR	9 cut(s)	38, 123, 203, 213, 393, 418, 663, 716, 782
FalI	AAGNNNNNCTT	6 cut(s)	432, 464, 893, 925, 979, 1011
FatI	CATG	3 cut(s)	211, 391, 714
FblI	GTMKAC	3 cut(s)	202, 388, 828
Fnu4HI	GCNGC	2 cut(s)	525, 812
FokI	GGATG	2 cut(s)	288, 965
Fsp4HI	GCNGC	2 cut(s)	525, 812
GluI	GCNGC	2 cut(s)	525, 812
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	672, 923
HapII	CCGG	2 cut(s)	59, 806
HgaI	GACGC	1 cut(s)	755
Hin1II	CATG	3 cut(s)	215, 395, 718
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	7 cut(s)	74, 89, 277, 385, 626, 776, 841
HpaII	CCGG	2 cut(s)	59, 806
Hpy166II	GTNNAC	3 cut(s)	203, 389, 829
Hpy188I	TCNGA	4 cut(s)	181, 274, 511, 537
Hpy188III	TCNNGA	2 cut(s)	128, 158
Hpy8I	GTNNAC	3 cut(s)	203, 389, 829
HpyAV	CCTTC	1 cut(s)	943
HpyCH4III	ACNGT	4 cut(s)	52, 154, 686, 855
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	9 cut(s)	7, 172, 334, 427, 566, 578, 637, 929, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 941
HpyF3I	CTNAG	3 cut(s)	180, 245, 461
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	3 cut(s)	215, 395, 718
Kzo9I	GATC	2 cut(s)	352, 881
LmnI	GCTCC	3 cut(s)	532, 808, 1007
Lsp1109I	GCAGC	2 cut(s)	511, 798
LweI	GCATC	2 cut(s)	33, 565
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	2 cut(s)	592, 756
MalI	GATC	2 cut(s)	354, 883
MboI	GATC	2 cut(s)	352, 881
MboII	GAAGA	4 cut(s)	74, 313, 336, 722
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	3 cut(s)	228, 360, 638
MlyI	GAGTC	3 cut(s)	83, 394, 620
MnlI	CCTC	3 cut(s)	388, 601, 934
MroXI	GAANNNNTTC	1 cut(s)	905
MseI	TTAA	7 cut(s)	104, 312, 435, 584, 878, 978, 1012
MspI	CCGG	2 cut(s)	59, 806
MspR9I	CCNGG	4 cut(s)	14, 284, 407, 767
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	4 cut(s)	14, 284, 407, 767
MwoI	GCNNNNNNNGC	2 cut(s)	139, 941
NdeII	GATC	2 cut(s)	352, 881
NlaIII	CATG	3 cut(s)	215, 395, 718
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	283
PciI	ACATGT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	4 cut(s)	74, 277, 776, 841
PkrI	GCNGC	2 cut(s)	526, 813
PleI	GAGTC	3 cut(s)	83, 393, 620
PpsI	GAGTC	3 cut(s)	83, 393, 620
Ppu21I	YACGTR	1 cut(s)	761
PscI	ACATGT	1 cut(s)	714
Psp6I	CCWGG	4 cut(s)	12, 282, 405, 765
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	4 cut(s)	12, 282, 405, 765
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	921
PstI	CTGCAG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	881
RsaI	GTAC	3 cut(s)	688, 897, 991
RsaNI	GTAC	3 cut(s)	687, 896, 990
SalI	GTCGAC	1 cut(s)	387
SaqAI	TTAA	7 cut(s)	104, 312, 435, 584, 878, 978, 1012
SatI	GCNGC	2 cut(s)	525, 812
Sau3AI	GATC	2 cut(s)	352, 881
Sau96I	GGNCC	1 cut(s)	921
SchI	GAGTC	3 cut(s)	83, 394, 620
ScrFI	CCNGG	4 cut(s)	14, 284, 407, 767
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	2 cut(s)	33, 565
SfcI	CTRYAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	228, 360, 638
StyD4I	CCNGG	4 cut(s)	12, 282, 405, 765
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	4 cut(s)	52, 154, 686, 855
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	3 cut(s)	92, 256, 388
TasI	AATT	3 cut(s)	228, 360, 638
TatI	WGTACW	3 cut(s)	686, 895, 989
TfiI	GAWTC	4 cut(s)	74, 277, 776, 841
Tru1I	TTAA	7 cut(s)	104, 312, 435, 584, 878, 978, 1012
Tru9I	TTAA	7 cut(s)	104, 312, 435, 584, 878, 978, 1012
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	524, 811
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	228, 336, 421
TspRI	CASTG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XmiI	GTMKAC	3 cut(s)	202, 388, 828
XmnI	GAANNNNTTC	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.