Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0008022

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG650800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGAATTGCAAATGAAGGTGGCGCAGGCAGTTCACGTCCTGAATCACGATACAGAGTCGTGCAACCGCGTGGCAGCTAATCAGTGGCTGGTTCAGTTTCAGCAGACTGACGCCGCTTGGGCCGTCGCCACCTCCATCCTCACCTCCGATTTTCACCATTCTTTCGGCTCCAATTACGAGGTCGAGTTCTTTGCTGCCCAGATTCTTAAACGAAAGATCCAAAATGAGGGCAGTTACCTGCAGTCAGGAGCTAAAGATGCTTTGCTAAATGCCCTTCTTCTGGCTGCCAAAAGATTTAGTTCAGGCCCTCACCAGCTTTTAACCCAAATCTGCCTTGCACTCTCGGCACTTTTACTGCGTGCTGTTGAGCATGGAAAACCTGTTGAGCAACTCTTTTATAGCCTCCAGAATCTGCAGACCCAGGTTGATGGCAATGTTGCTGTTATGGAGATGCTTACTGTTTTACCGGAAGAAGTTTTAGATTCCCAAAATACTGACTCGAAAATAAGTTTAACCGACAGAAGCCAGTATGGTCAAGAGCTTCTCTCGCACACACCTACGGTTCTTGAGTTCCTATTGCAACAATCTGAGAAAAGGTTTGATAGTGGTATACAACAACATGAAAGCAACAGAAAAATTCTGCGTTGCTTACTAAGTTGGGTTCGAGCTGGGTGCTTCTCGGAGATTCCCCAGGGATTACTACCAGCACATCCACTTCTTAACTTTGTCTTCAGTTCTTTGCAGGTGCCATCTTCATTTGATCTGGCAATTGAAGTTCTCATTGAGCTTGTGAGTCGACATGAGGTTTTGTTATGTAGGGTGCATTTCATTAAAGAAGTTCTACTTCTACCAGCTCTCAGTAATGGAGACGAAAAAATAGTAGGTGGTCTTGCGTGCTTATTGTCAGAGATTGGGCAGGCTGCTCCATCTCTGATAGTAGAAGCAAGTGTTGAAGCCCTTGCACTGGCAGATGCACTTTTAAGCTGTGTGACATTTCCAAGTGAGGACTGGGAGATAGCAGACTCAACTTTGCAATTTTGGTCTGGGTTAGCAAGCTATATTCTTGGCCTTGATGAGAACAGTACAAATCAAAGGAAGCAAGTGGAAGACATGTTTTTCCCCGTATTTTCAGCACTACTTGACGCAGTTTTGTTACGTGCCCAGGTAGATGATTCTATGTTCAATGACGACCAAGGAACACCGGAGCTGCCTGATGGACTTGTCTACTTTAGAACGAATCTTGTTGAACTGTTGGTGGATATTTGTCAGCTTTTAAGATCTGCTACATTTGTACAGAAGCTTTTCTTTGGTGGTTGGGCCTCTGCAAATGCACCAATAGCTTGGAAGGATGTGGAAACCAAGTTGTTTGCTCTTAATGTGGTCGCTGAGGTAATCCTACAGGAAGGCCAAATCTTTGATTTCTCGGTCATTATGCAGTTAGTGACGGTTTTGTCCACTAGGCCGTTGGATGAACTGAAGGGCATCATGTGCATTGTGCATAGATCTCTTGCAGATGTTGTTGGCTCCTATTCTAAGTGGATCTCTGCTTTTCAAACAAATGCTAGACCCTTACTGTTATTTCTTGCTGCTGGAATATCAGAACCCTTGTCCTCGAGTTCTTGTGCATCTGCATTGCGTAAAGTTTGTGAAGATGCTTCTGCAGTGATGTATGAACCTTCAAATTTGGAGATTTTGATGTGGATAGGAGAGGGTCTGGAGAAGAGTCATTTACCTTTGGAAGATGAGGAAGAAGTTGTTAGTGCAGTTAGTCTGATCCTTGGTTCTATTAATAACAAAGAATTAAAGAGCAACTTATTGGCTAGATTGCTTTCTTCTAGCTTTGAAGCTATTGGGAAACTTGTTGATAAAGATAGCAGCCATTGCCTAAGACAAAATCCTGCTACCTATACACAAATTTTGAACTCTGGTGCAAGAGGGCTTTACAGGATGGGAACTGTATTCAGCCATCTTGCAACATCCGTGCAGAGTGTATCTTCTGGAGATGGTTGTATGCTTGCGCTATTGCAAGCGTTTTGGCCAATGCTAGAGAAGCTTTTCAGGTCTGAGCACATGGAGAATGGTAATTTATCAACCGCAGCTTGCCGAGCACTTACCCAAGCAATTCAGTCATCAGGCGAACACTTCTTAAGGCTTCTGCCTAAAGTACTAGATTGCCTATCAACAAATTATGTGTCCTTCCAAAGTCATGAATGCTACATAAGAACTGCATCTGTTGTGATTGAAGAATTTGGTCACAAAGAAGAGTATGGAGCTTTATTTGTCACTACTTTGGAGAGATTTACGCATGCTGCATCGGTAATGGCTCTTAATTCTTCATATATATGTGACCAAGAGCCTGATCTAGTAGAGGCGTACACAAATTTTGCATCCACATATGTTCGCGGAACTCGTAAGGAAGTAGTGGCTGCATCTGGTACCCTTCTTGAAATTTCCTTTCAAAAGGCAGCTATATGCTGCACAGCTATGCATCGTGGAGCAGCACTTGCATCCATGTCATACTTATCTTGTTTTTTGGAGGTGAGCCTGGCGTCTTTGTTGGATTCCATGTCTTGTATTCCTGAAGGGTCATTCAGTGCAATGGCCATTCAAGTCATATCCCACAGTGGGGAGGGACTTGTATCAAATCTGGTTTATGCTTTACTTGGAGTTTCAGCAATGTCACGGGTTCACAAATGTGCCACTATTTTGCAACAATTGGCAGCAATATGCAGTTTAAGTGAGAGCACAACCGGCAAGGCTATTCTTTGTTGGGAATCTTTGCATGGATGGTTGCAGTCAGCGGTCCAGGCTCTTCCTGCTGAATACCTGAAGCAAGGGGAACTTGAAACTTTAGTGCCGGTTTGGTCTAAGGCCCTTGCCGGTGCAGCCTCAGATTATATCCAGAGCAGAAGTTGTGATGGAGGGCATAACAATTATGGTCACATGCAAGGGAAAGGTGGAAGAGTTTTGAAGCGTTTAGTCCGTGAATTTGCTGATAGCCACCGCAATATTCCAAACTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1008

Amino Acids

110.52

Weight (kDa)

5.2

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	104 - 260	5.3e-19	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	290 - 383	1.5e-07	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_4th	PF24139	673 - 769	1.5e-08	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12930
fragaria_vesca	FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490 FvH4_6g54490
malus_domestica	MD09G1000300.v1.1
prunus_persica	Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1 Prupe.3G316100_v2.0.a1
pyrus_communis	pycom111g00020
rosa_chinensis	RchiOBHm_Chr2g0176781
rosa_multiflora	Rmu_sc0007886.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076140
rosa_rugosa	Rorug02G0599400.1 Rorug02G0599500.1
rosa_samantha	Rh2AG676200 Rh2BG687200 Rh2CG650800 Rh2DG701500
rosa_wichuraiana	Rw2G055480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	733
AasI	GACNNNNNNGTC	1 cut(s)	1450
Acc36I	ACCTGC	2 cut(s)	246, 733
Acc65I	GGTACC	1 cut(s)	2435
AccB1I	GGYRCC	2 cut(s)	745, 2435
AccI	GTMKAC	3 cut(s)	610, 796, 1224
AccII	CGCG	2 cut(s)	69, 2403
AciI	CCGC	6 cut(s)	67, 114, 2094, 2403, 2801, 3004
AclWI	GGATC	3 cut(s)	211, 1547, 1768
AcoI	YGGCCR	2 cut(s)	2036, 2601
AcsI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
AcuI	CTGAAG	4 cut(s)	715, 1496, 2601, 2849
AcyI	GRCGYC	2 cut(s)	111, 2549
AfaI	GTAC	5 cut(s)	1084, 1293, 2166, 2375, 2437
AfiI	CCNNNNNNNGG	5 cut(s)	226, 280, 964, 2625, 2626
AflII	CTTAAG	1 cut(s)	2146
AflIII	ACRYGT	1 cut(s)	1110
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
AleI	CACNNNNGTG	1 cut(s)	2694
Alw21I	GWGCWC	3 cut(s)	2070, 2110, 2747
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	3 cut(s)	211, 1547, 1768
AlwNI	CAGNNNCTG	2 cut(s)	88, 412
Ama87I	CYCGRG	1 cut(s)	1612
AoxI	GGCC	9 cut(s)	120, 304, 1066, 1317, 1405, 1460, 2036, 2601, 2871
ApoI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
ArsI	GACNNNNNNTTYG	2 cut(s)	2177, 2209
AseI	ATTAAT	1 cut(s)	1788
Asp700I	GAANNNNTTC	2 cut(s)	1301, 2054
Asp718I	GGTACC	1 cut(s)	2435
AspLEI	GCGC	2 cut(s)	25, 2020
AspS9I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
AsuHPI	GGTGA	4 cut(s)	133, 146, 302, 2551
AvaI	CYCGRG	1 cut(s)	1612
AvaII	GGWCC	1 cut(s)	2803
BaeGI	GKGCMC	1 cut(s)	1162
BalI	TGGCCA	2 cut(s)	2038, 2603
BanI	GGYRCC	2 cut(s)	745, 2435
BbsI	GAAGAC	2 cut(s)	721, 1113
Bbv12I	GWGCWC	3 cut(s)	2070, 2110, 2747
BbvCI	CCTCAGC	1 cut(s)	1386
BceAI	ACGGC	2 cut(s)	107, 1447
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 654, 688
BciT130I	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
BfmI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
BfrI	CTTAAG	1 cut(s)	2146
BfuAI	ACCTGC	2 cut(s)	246, 733
BglI	GCCNNNNNGGC	1 cut(s)	119
BglII	AGATCT	2 cut(s)	1277, 1502
BmcAI	AGTACT	1 cut(s)	2166
Bme1390I	CCNGG	5 cut(s)	422, 692, 1163, 2546, 2807
Bme18I	GGWCC	1 cut(s)	2803
BmeT110I	CYCGRG	1 cut(s)	1612
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
BmiI	GGNNCC	4 cut(s)	169, 747, 1525, 2437
BmrFI	CCNGG	5 cut(s)	422, 692, 1163, 2546, 2807
BmrI	ACTGGG	1 cut(s)	1018
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	2 cut(s)	721, 1113
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	3 cut(s)	389, 1736, 2019
Bpu10I	CCTNAGC	1 cut(s)	1386
BpuEI	CTTGAG	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	1157
BsaHI	GRCGYC	2 cut(s)	111, 2549
BsaJI	CCNNGG	6 cut(s)	420, 690, 691, 1161, 1192, 1777
BsaWI	WCCGGW	2 cut(s)	466, 1201
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 280, 964, 2625, 2626
Bse118I	RCCGGY	3 cut(s)	2750, 2857, 2879
Bse1I	ACTGG	3 cut(s)	526, 969, 1013
Bse3DI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BseBI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BseDI	CCNNGG	6 cut(s)	420, 690, 691, 1161, 1192, 1777
BseGI	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BseLI	CCNNNNNNNGG	5 cut(s)	226, 280, 964, 2625, 2626
BseMI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BseMII	CTCAG	5 cut(s)	579, 871, 1377, 2055, 2904
BseNI	ACTGG	3 cut(s)	526, 969, 1013
BseSI	GKGCMC	1 cut(s)	1162
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	4 cut(s)	1782, 2003, 2461, 2904
Bsh1236I	CGCG	2 cut(s)	69, 2403
BshFI	GGCC	9 cut(s)	122, 306, 1068, 1319, 1407, 1462, 2038, 2603, 2873
BshNI	GGYRCC	2 cut(s)	745, 2435
BsiHKAI	GWGCWC	3 cut(s)	2070, 2110, 2747
BsiHKCI	CYCGRG	1 cut(s)	1612
BsiSI	CCGG	5 cut(s)	467, 1202, 2751, 2858, 2880
BslFI	GGGAC	1 cut(s)	2646
BslI	CCNNNNNNNGG	5 cut(s)	226, 280, 964, 2625, 2626
BsmAI	GTCTC	1 cut(s)	861
BsmBI	CGTCTC	1 cut(s)	861
BsmFI	GGGAC	1 cut(s)	2646
BsmI	GAATGC	1 cut(s)	2216
BsnI	GGCC	9 cut(s)	122, 306, 1068, 1319, 1407, 1462, 2038, 2603, 2873
BsoBI	CYCGRG	1 cut(s)	1612
Bsp1286I	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
Bsp1407I	TGTACA	1 cut(s)	1291
Bsp143I	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BspACI	CCGC	6 cut(s)	67, 114, 2094, 2403, 2801, 3004
BspANI	GGCC	9 cut(s)	122, 306, 1068, 1319, 1407, 1462, 2038, 2603, 2873
BspCNI	CTCAG	5 cut(s)	580, 870, 1378, 2056, 2903
BspFNI	CGCG	2 cut(s)	69, 2403
BspHI	TCATGA	1 cut(s)	2206
BspLI	GGNNCC	4 cut(s)	169, 747, 1525, 2437
BspMAI	CTGCAG	3 cut(s)	243, 417, 1663
BspMI	ACCTGC	2 cut(s)	246, 733
BspPI	GGATC	3 cut(s)	211, 1547, 1768
BspQI	GCTCTTC	1 cut(s)	2817
BspT107I	GGYRCC	2 cut(s)	745, 2435
BspTI	CTTAAG	1 cut(s)	2146
BsrDI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BsrFI	RCCGGY	3 cut(s)	2750, 2857, 2879
BsrGI	TGTACA	1 cut(s)	1291
BsrI	ACTGG	3 cut(s)	526, 969, 1013
BssAI	RCCGGY	3 cut(s)	2750, 2857, 2879
BssECI	CCNNGG	6 cut(s)	420, 690, 691, 1161, 1192, 1777
BssMI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BssNAI	GTATAC	1 cut(s)	611
BssNI	GRCGYC	2 cut(s)	111, 2549
BssT1I	CCWWGG	2 cut(s)	1192, 1777
Bst1107I	GTATAC	1 cut(s)	611
Bst2UI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
Bst4CI	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
Bst6I	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
BstACI	GRCGYC	2 cut(s)	111, 2549
BstAFI	CTTAAG	1 cut(s)	2146
BstAPI	GCANNNNNTGC	3 cut(s)	1488, 1881, 2504
BstAUI	TGTACA	1 cut(s)	1291
BstBAI	YACGTR	1 cut(s)	1157
BstC8I	GCNNGC	9 cut(s)	27, 360, 895, 918, 1054, 2016, 2028, 2101, 2307
BstDEI	CTNAG	9 cut(s)	588, 653, 857, 1386, 1533, 1886, 2064, 2868, 2890
BstF5I	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BstFNI	CGCG	2 cut(s)	69, 2403
BstHHI	GCGC	2 cut(s)	25, 2020
BstKTI	GATC	7 cut(s)	219, 763, 1280, 1505, 1542, 1776, 2362
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BstNI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BstNSI	RCATGY	3 cut(s)	1114, 2309, 2947
BstSCI	CCNGG	5 cut(s)	420, 690, 1161, 2544, 2805
BstSFI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	2 cut(s)	69, 2403
BstV2I	GAAGAC	2 cut(s)	721, 1113
BstX2I	RGATCY	4 cut(s)	216, 1277, 1502, 1539
BstXI	CCANNNNNNTGG	2 cut(s)	428, 1341
BstYI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
BstZ17I	GTATAC	1 cut(s)	611
BsuRI	GGCC	9 cut(s)	122, 306, 1068, 1319, 1407, 1462, 2038, 2603, 2873
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BtsI	GCAGTG	1 cut(s)	1668
BtsIMutI	CAGTG	5 cut(s)	89, 962, 1668, 2599, 2629
BveI	ACCTGC	2 cut(s)	246, 733
Cac8I	GCNNGC	9 cut(s)	27, 360, 895, 918, 1054, 2016, 2028, 2101, 2307
CaiI	CAGNNNCTG	2 cut(s)	88, 412
CciI	TCATGA	1 cut(s)	2206
CfoI	GCGC	2 cut(s)	25, 2020
Cfr10I	RCCGGY	3 cut(s)	2750, 2857, 2879
Cfr13I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
CseI	GACGC	3 cut(s)	119, 1151, 2538
Csp6I	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
CviQI	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
DdeI	CTNAG	9 cut(s)	588, 653, 857, 1386, 1533, 1886, 2064, 2868, 2890
DpnI	GATC	7 cut(s)	218, 762, 1279, 1504, 1541, 1775, 2361
DpnII	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
DrdI	GACNNNNNNGTC	1 cut(s)	1450
DseDI	GACNNNNNNGTC	1 cut(s)	1450
EaeI	YGGCCR	2 cut(s)	2036, 2601
Eam1104I	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
EarI	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
Eco130I	CCWWGG	2 cut(s)	1192, 1777
Eco47I	GGWCC	1 cut(s)	2803
Eco57I	CTGAAG	4 cut(s)	715, 1496, 2601, 2849
Eco88I	CYCGRG	1 cut(s)	1612
EcoO109I	RGGNCCY	2 cut(s)	305, 2872
EcoRII	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
EcoT14I	CCWWGG	2 cut(s)	1192, 1777
EcoT22I	ATGCAT	1 cut(s)	2490
ErhI	CCWWGG	2 cut(s)	1192, 1777
Esp3I	CGTCTC	1 cut(s)	861
FalI	AAGNNNNNCTT	8 cut(s)	828, 860, 1289, 1321, 1796, 1828, 2826, 2858
FaqI	GGGAC	1 cut(s)	2646
FauNDI	CATATG	1 cut(s)	2395
FblI	GTMKAC	3 cut(s)	610, 796, 1224
FokI	GGATG	9 cut(s)	122, 696, 1361, 1481, 1960, 1963, 2374, 2494, 2799
FspBI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
GlaI	GCGC	2 cut(s)	24, 2019
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	3 cut(s)	389, 1736, 2019
HaeIII	GGCC	9 cut(s)	122, 306, 1068, 1319, 1407, 1462, 2038, 2603, 2873
HapII	CCGG	5 cut(s)	467, 1202, 2751, 2858, 2880
HgaI	GACGC	3 cut(s)	119, 1151, 2538
HhaI	GCGC	2 cut(s)	25, 2020
Hin1I	GRCGYC	2 cut(s)	111, 2549
Hin6I	GCGC	2 cut(s)	23, 2018
HinP1I	GCGC	2 cut(s)	23, 2018
HincII	GTYRAC	1 cut(s)	797
HindII	GTYRAC	1 cut(s)	797
HindIII	AAGCTT	2 cut(s)	1298, 2051
HpaII	CCGG	5 cut(s)	467, 1202, 2751, 2858, 2880
HphI	GGTGA	4 cut(s)	133, 146, 302, 2551
Hpy166II	GTNNAC	7 cut(s)	34, 611, 797, 1225, 1455, 2376, 2689
Hpy188I	TCNGA	9 cut(s)	148, 589, 682, 907, 933, 1600, 1773, 2065, 2893
Hpy8I	GTNNAC	7 cut(s)	34, 611, 797, 1225, 1455, 2376, 2689
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	9 cut(s)	10, 284, 1339, 1397, 1471, 1686, 2206, 2450, 2576
HpyCH4III	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
HpyCH4IV	ACGT	2 cut(s)	36, 1156
HpyF3I	CTNAG	9 cut(s)	588, 653, 857, 1386, 1533, 1886, 2064, 2868, 2890
HpySE526I	ACGT	2 cut(s)	36, 1156
Hsp92I	GRCGYC	2 cut(s)	111, 2549
HspAI	GCGC	2 cut(s)	23, 2018
KpnI	GGTACC	1 cut(s)	2439
Kzo9I	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
LguI	GCTCTTC	1 cut(s)	2817
LmnI	GCTCC	7 cut(s)	173, 248, 928, 1204, 1529, 2270, 2495
MaeI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
MaeII	ACGT	2 cut(s)	36, 1156
MaeIII	GTNAC	9 cut(s)	233, 988, 1152, 1441, 2252, 2281, 2345, 2679, 2939
MalI	GATC	7 cut(s)	218, 762, 1279, 1504, 1541, 1775, 2361
MboI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
MfeI	CAATTG	2 cut(s)	768, 2714
MflI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
MhlI	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
MlsI	TGGCCA	2 cut(s)	2038, 2603
MluNI	TGGCCA	2 cut(s)	2038, 2603
MlyI	GAGTC	5 cut(s)	65, 491, 802, 1016, 1732
MmeI	TCCRAC	2 cut(s)	1446, 2538
Mox20I	TGGCCA	2 cut(s)	2038, 2603
Mph1103I	ATGCAT	1 cut(s)	2490
MroXI	GAANNNNTTC	2 cut(s)	1301, 2054
MscI	TGGCCA	2 cut(s)	2038, 2603
MslI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
Msp20I	TGGCCA	2 cut(s)	2038, 2603
MspA1I	CMGCKG	1 cut(s)	2801
MspCI	CTTAAG	1 cut(s)	2146
MspI	CCGG	5 cut(s)	467, 1202, 2751, 2858, 2880
MspR9I	CCNGG	5 cut(s)	422, 692, 1163, 2546, 2807
MunI	CAATTG	2 cut(s)	768, 2714
Mva1269I	GAATGC	1 cut(s)	2216
MvaI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
MvnI	CGCG	2 cut(s)	69, 2403
NdeI	CATATG	1 cut(s)	2395
NdeII	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
NlaIV	GGNNCC	4 cut(s)	169, 747, 1525, 2437
NmeAIII	GCCGAG	2 cut(s)	323, 2129
NmuCI	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
NsiI	ATGCAT	1 cut(s)	2490
NspI	RCATGY	3 cut(s)	1114, 2309, 2947
OliI	CACNNNNGTG	1 cut(s)	2694
PaeI	GCATGC	1 cut(s)	2309
PaeR7I	CTCGAG	1 cut(s)	1612
PagI	TCATGA	1 cut(s)	2206
PaqCI	CACCTGC	1 cut(s)	733
PasI	CCCWGGG	1 cut(s)	691
PciI	ACATGT	1 cut(s)	1110
PciSI	GCTCTTC	1 cut(s)	2817
PcsI	WCGNNNNNNNCGW	1 cut(s)	2407
PctI	GAATGC	1 cut(s)	2216
PdmI	GAANNNNTTC	2 cut(s)	1301, 2054
PfeI	GAWTC	9 cut(s)	43, 202, 409, 482, 685, 1172, 1237, 2561, 2774
PleI	GAGTC	5 cut(s)	64, 491, 801, 1016, 1731
PpsI	GAGTC	5 cut(s)	64, 491, 801, 1016, 1731
Ppu21I	YACGTR	1 cut(s)	1157
PscI	ACATGT	1 cut(s)	1110
PshBI	ATTAAT	1 cut(s)	1788
Psp6I	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
PspN4I	GGNNCC	4 cut(s)	169, 747, 1525, 2437
PspPI	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
PspXI	VCTCGAGB	1 cut(s)	1612
PstI	CTGCAG	3 cut(s)	243, 417, 1663
PstNI	CAGNNNCTG	2 cut(s)	88, 412
PsuI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
RsaI	GTAC	5 cut(s)	1084, 1293, 2166, 2375, 2437
RsaNI	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
RseI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
SalI	GTCGAC	1 cut(s)	795
SapI	GCTCTTC	1 cut(s)	2817
Sau3AI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
Sau96I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
ScaI	AGTACT	1 cut(s)	2166
SchI	GAGTC	5 cut(s)	65, 491, 802, 1016, 1732
ScrFI	CCNGG	5 cut(s)	422, 692, 1163, 2546, 2807
SduI	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
SfcI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
Sfr274I	CTCGAG	1 cut(s)	1612
SinI	GGWCC	1 cut(s)	2803
SlaI	CTCGAG	1 cut(s)	1612
SmiMI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
SmlI	CTYRAG	3 cut(s)	566, 1612, 2146
SmoI	CTYRAG	3 cut(s)	566, 1612, 2146
SphI	GCATGC	1 cut(s)	2309
SsiI	CCGC	6 cut(s)	67, 114, 2094, 2403, 2801, 3004
SspI	AATATT	1 cut(s)	3010
SspMI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
StyD4I	CCNGG	5 cut(s)	420, 690, 1161, 2544, 2805
StyI	CCWWGG	2 cut(s)	1192, 1777
TaaI	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
TaiI	ACGT	2 cut(s)	39, 1159
TaqI	TCGA	5 cut(s)	183, 500, 664, 796, 1613
TaqII	GACCGA	1 cut(s)	1414
TatI	WGTACW	3 cut(s)	1082, 1291, 2164
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	9 cut(s)	43, 202, 409, 482, 685, 1172, 1237, 2561, 2774
TscAI	CASTG	5 cut(s)	89, 969, 1668, 2599, 2629
TseFI	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
Tsp45I	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
TspDTI	ATGAA	8 cut(s)	29, 636, 744, 817, 1485, 1686, 2223, 2325
TspGWI	ACGGA	2 cut(s)	1969, 2972
TspRI	CASTG	5 cut(s)	89, 969, 1668, 2599, 2629
Vha464I	CTTAAG	1 cut(s)	2146
VpaK11BI	GGWCC	1 cut(s)	2803
VspI	ATTAAT	1 cut(s)	1788
XapI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
XceI	RCATGY	3 cut(s)	1114, 2309, 2947
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1005, 1462
XhoI	CTCGAG	1 cut(s)	1612
XmiI	GTMKAC	3 cut(s)	610, 796, 1224
XmnI	GAANNNNTTC	2 cut(s)	1301, 2054
XspI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
ZrmI	AGTACT	1 cut(s)	2166
Zsp2I	ATGCAT	1 cut(s)	2490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.