FvH4_7g02561

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0019258
Physical Location & Seq
Forward (+)
2840008 .. 2840961
954 bp
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UTR
Exon/CDS
Intron
FvH4_7g02561.t1

Sequence Viewer

Length: 726 bp
ATGGCCTCTTCTCGCGATGATAGCAGCGATGAGAGCATCTTTTGCTGCCTTACCCTTTCCACGTTTATCATTGTACTTCTCTCCTTTATCGTCGCACTTCTTGTCCTCGTTGTTTGTTCCATCCATCACCGCCCCTATTACGTCAACCTCGACGGAGTTCATGCCAACTTCACCACCACCGCCACCACGACCAATGACACCCTCAACTACCACCTCGACCTCTCCATTTCCCTTCGAAACCCTAACAAATATTACAGCGTCCATCACCACGAAATCAAAGTTATGGCAGCGTACAACAACACGGCCGACGATGCCTTAATTGGTACTGTGAAGAAATTTAACTCCATCTCGCAAAAGCCCAAGTCCAACGTTGTTCTCACACGATCCTTCAAGGGTGTGATTAGTCATGAGGTTGACACTCTTGTTGTCAGCCTCAACCTTAAAAACAAGTACAAGACTCACTTCTTGGGTTGGAAAGCCATGTCCGAGTTCGAATGCGACTTGAAGGTTCCATCGGTCAATGGTAATGGACAGAGTTTTGAGCTGACCACTGAGGAAGCATGCAAGGTCGAAGATGAAGGCCACTTTTCTTTCCCTATACCTTTGGCTGTCTATTTCTTCTTCTTGGTCTTCCTGGCTCCATCTCTTTTTCCCGTGAGCAAGCTGCTTGCTTATATAGCGTTTGTCCTTGCACTTGCATGGTACTCGGTCAGTGTGTCGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

242

Amino Acids

26.92

Weight (kDa)

6.34

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02561
rosa_chinensis RchiOBHm_Chr3g0469351
rosa_laevigata RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa Rorug03G0100800
rosa_samantha Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 130, 180
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 5 cut(s) 75, 293, 325, 452, 704
AgsI TTSAA 2 cut(s) 391, 505
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 2 cut(s) 544, 664
AluI AGCT 2 cut(s) 544, 664
AlwI GGATC 1 cut(s) 378
AoxI GGCC 3 cut(s) 3, 303, 580
ApeKI GCWGC 4 cut(s) 24, 45, 287, 664
ApoI RAATTY 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 119, 163, 257
AsuII TTCGAA 2 cut(s) 235, 492
BbsI GAAGAC 1 cut(s) 622
BbvI GCAGC 4 cut(s) 32, 36, 299, 651
BccI CCATC 6 cut(s) 128, 132, 270, 353, 520, 649
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 1 cut(s) 635
BisI GCNGC 4 cut(s) 25, 46, 288, 665
BlsI GCNGC 4 cut(s) 26, 47, 289, 666
Bme1390I CCNGG 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 510, 639
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 2 cut(s) 45, 301
BpiI GAAGAC 1 cut(s) 622
Bpu14I TTCGAA 2 cut(s) 235, 492
BseBI CCWGG 1 cut(s) 635
BseGI GGATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 543
BseX3I CGGCCG 1 cut(s) 303
BseXI GCAGC 4 cut(s) 32, 36, 299, 651
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 5, 305, 582
BsiEI CGRYCG 1 cut(s) 306
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 3 cut(s) 5, 305, 582
Bsp119I TTCGAA 2 cut(s) 235, 492
Bsp143I GATC 1 cut(s) 383
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 2 cut(s) 130, 180
BspANI GGCC 3 cut(s) 5, 305, 582
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 510, 639
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 2 cut(s) 235, 492
BssMI GATC 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBI TTCGAA 2 cut(s) 235, 492
BstC8I GCNNGC 3 cut(s) 562, 662, 669
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 1 cut(s) 386
BstMBI GATC 1 cut(s) 383
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 5 cut(s) 21, 33, 42, 311, 677
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 633
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 4 cut(s) 32, 36, 299, 651
BstV2I GAAGAC 1 cut(s) 622
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 5, 305, 582
BtgZI GCGATG 2 cut(s) 30, 42
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 549, 718
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 562, 662, 669
CciI TCATGA 1 cut(s) 406
CseI GACGC 1 cut(s) 247
Csp6I GTAC 5 cut(s) 74, 292, 324, 451, 703
CviAII CATG 5 cut(s) 161, 407, 481, 561, 699
CviQI GTAC 5 cut(s) 74, 292, 324, 451, 703
DdeI CTNAG 1 cut(s) 552
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 303
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 303
Eco52I CGGCCG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 633
FaeI CATG 5 cut(s) 164, 410, 484, 564, 702
FaiI YATR 9 cut(s) 162, 284, 408, 482, 562, 599, 675, 677, 700
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 5 cut(s) 160, 406, 480, 560, 698
Fnu4HI GCNGC 4 cut(s) 25, 46, 288, 665
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 4 cut(s) 25, 46, 288, 665
GluI GCNGC 4 cut(s) 25, 46, 288, 665
HaeIII GGCC 3 cut(s) 5, 305, 582
HgaI GACGC 1 cut(s) 247
Hin1II CATG 5 cut(s) 164, 410, 484, 564, 702
HincII GTYRAC 2 cut(s) 145, 415
HindII GTYRAC 2 cut(s) 145, 415
HinfI GANTC 1 cut(s) 457
HphI GGTGA 3 cut(s) 119, 163, 257
Hpy166II GTNNAC 2 cut(s) 145, 415
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 2 cut(s) 14, 407
Hpy8I GTNNAC 2 cut(s) 145, 415
Hpy99I CGWCG 4 cut(s) 95, 155, 311, 724
HpyAV CCTTC 4 cut(s) 242, 397, 499, 572
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 3 cut(s) 62, 141, 369
HpyCH4V TGCA 3 cut(s) 564, 692, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 33, 42, 311, 677
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 3 cut(s) 62, 141, 369
Hsp92II CATG 5 cut(s) 164, 410, 484, 564, 702
Kzo9I GATC 1 cut(s) 383
LmnI GCTCC 1 cut(s) 643
LpnPI CCDG 2 cut(s) 620, 647
Lsp1109I GCAGC 4 cut(s) 32, 36, 299, 651
LweI GCATC 2 cut(s) 45, 301
MaeII ACGT 3 cut(s) 62, 141, 369
MalI GATC 1 cut(s) 385
MboI GATC 1 cut(s) 383
MboII GAAGA 5 cut(s) 343, 584, 610, 613, 622
MluCI AATT 2 cut(s) 318, 335
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 2 cut(s) 390, 452
MnlI CCTC 9 cut(s) 16, 116, 158, 212, 224, 230, 403, 443, 547
MseI TTAA 3 cut(s) 317, 339, 441
MslI CAYNNNNRTG 1 cut(s) 697
MspR9I CCNGG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 5 cut(s) 21, 33, 42, 311, 677
NdeII GATC 1 cut(s) 383
NlaIII CATG 5 cut(s) 164, 410, 484, 564, 702
NlaIV GGNNCC 2 cut(s) 510, 639
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 1 cut(s) 564
NspV TTCGAA 2 cut(s) 235, 492
PaeI GCATGC 1 cut(s) 564
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 500
PkrI GCNGC 4 cut(s) 26, 47, 289, 666
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 2 cut(s) 510, 639
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 5 cut(s) 75, 293, 325, 452, 704
RsaNI GTAC 5 cut(s) 74, 292, 324, 451, 703
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 3 cut(s) 317, 339, 441
SatI GCNGC 4 cut(s) 25, 46, 288, 665
Sau3AI GATC 1 cut(s) 383
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 635
SfaNI GCATC 2 cut(s) 45, 301
SfuI TTCGAA 2 cut(s) 235, 492
SmiMI CAYNNNNRTG 1 cut(s) 697
SphI GCATGC 1 cut(s) 564
Sse9I AATT 2 cut(s) 318, 335
SsiI CCGC 2 cut(s) 130, 180
SspI AATATT 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 3 cut(s) 65, 144, 372
TaqI TCGA 5 cut(s) 150, 216, 235, 492, 570
TaqII GACCGA 2 cut(s) 505, 697
TasI AATT 2 cut(s) 318, 335
TatI WGTACW 2 cut(s) 73, 450
Tru1I TTAA 3 cut(s) 317, 339, 441
Tru9I TTAA 3 cut(s) 317, 339, 441
TscAI CASTG 2 cut(s) 556, 718
TseI GCWGC 4 cut(s) 24, 45, 287, 664
TspDTI ATGAA 2 cut(s) 149, 591
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 2 cut(s) 556, 718
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.