Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002650

Physical Location & Seq

Genomic Coordinates Reverse (-)

7889991 .. 7891933

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTCGTTGTCCAAGGATGATGAAGACCTATTTTCCTTCGCAAGCCAATTATCTCCACTTGATTTGAGTGGAAGTGAGTATGTTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGAAGAGGGTATGTCCAACAATATTAATACCACTTCTTGCAATACTGAAGATAGAAGTCGTATTGCTAGTTCTTCTTCAAAACCATCGAAAGCCAAAATGATGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTCGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGTATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGAGTTTGGGAAGAATGAAGGAGAGCTGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCCGATTTGCAACTCGAGGAAAAGACGAAGCGGCTCAGGCATGCTTATTTTAAGGCCAAAAGTTGTGGAAATTATTCTATGCACCGACGGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

198

Amino Acids

22.57

Weight (kDa)

5.41

Isoelectric Point (pI)

71.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWP-RK	PF02042	89 - 136	6.7e-21	RWP-RK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150
fragaria_vesca	FvH4_6g15650 FvH4_6g15650 FvH4_6g15650 FvH4_6g15650
malus_domestica	MD04G1100800.v1.1 MD12G1120500.v1.1
prunus_persica	Prupe.6G238800_v2.0.a1
pyrus_communis	pycom04g09560 pycom12g11950
rosa_chinensis	RchiOBHm_Chr3g0469341
rosa_laevigata	RLG00000024358
rosa_multiflora	Rmu_ssc0000394.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411970
rosa_rugosa	Rorug03G0100500 Rorug03G0100600 Rorug03G0100600 Rorug03G0100700 Rorug03G0100700 Rorug03G0100800 Rorug03G0100800
rosa_samantha	Rh3AG150000 Rh3BG173600 Rh3CG164600 Rh3DG201900
rosa_wichuraiana	Rw3G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	231, 339
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	243, 400
AluBI	AGCT	2 cut(s)	317, 457
AluI	AGCT	2 cut(s)	317, 457
Alw26I	GTCTC	1 cut(s)	337
Ama87I	CYCGRG	2 cut(s)	309, 512
AoxI	GGCC	2 cut(s)	383, 552
ApeKI	GCWGC	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	2 cut(s)	426, 571
AvaI	CYCGRG	2 cut(s)	309, 512
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	4 cut(s)	97, 134, 155, 256
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	2 cut(s)	231, 416
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	315, 530
BlsI	GCNGC	2 cut(s)	316, 531
BmeT110I	CYCGRG	2 cut(s)	309, 512
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	15, 133
BseDI	CCNNGG	2 cut(s)	15, 133
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	385, 554
BsiHKCI	CYCGRG	2 cut(s)	309, 512
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	385, 554
BsoBI	CYCGRG	2 cut(s)	309, 512
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	2 cut(s)	385, 554
BspCNI	CTCAG	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	15, 133
BssT1I	CCWWGG	2 cut(s)	15, 133
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	46, 540
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	301, 542
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	385, 554
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	46, 540
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 544, 579
CviAII	CATG	2 cut(s)	298, 539
CviJI	RGCY	8 cut(s)	5, 48, 257, 317, 385, 457, 532, 554
CviKI_1	RGCY	8 cut(s)	5, 48, 257, 317, 385, 457, 532, 554
DdeI	CTNAG	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	15, 133
Eco57I	CTGAAG	2 cut(s)	231, 339
Eco88I	CYCGRG	2 cut(s)	309, 512
EcoT14I	CCWWGG	2 cut(s)	15, 133
ErhI	CCWWGG	2 cut(s)	15, 133
FaeI	CATG	2 cut(s)	301, 542
FaiI	YATR	6 cut(s)	84, 176, 281, 299, 540, 578
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	297, 538
Fnu4HI	GCNGC	2 cut(s)	315, 530
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	315, 530
FspBI	CTAG	2 cut(s)	231, 416
GluI	GCNGC	2 cut(s)	315, 530
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	385, 554
Hin1II	CATG	2 cut(s)	301, 542
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	362, 431, 500
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	2 cut(s)	49, 443
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	204, 508, 580, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	301, 542
LpnPI	CCDG	3 cut(s)	416, 443, 520
Lsp1109I	GCAGC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	231, 416
MaeIII	GTNAC	1 cut(s)	337
MboII	GAAGA	8 cut(s)	38, 179, 224, 228, 231, 332, 431, 454
MluCI	AATT	3 cut(s)	50, 107, 568
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	163, 471, 508
MroXI	GAANNNNTTC	2 cut(s)	426, 571
MseI	TTAA	4 cut(s)	116, 189, 348, 549
MslI	CAYNNNNRTG	1 cut(s)	94
MspA1I	CMGCKG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	535
NlaIII	CATG	2 cut(s)	301, 542
NspI	RCATGY	2 cut(s)	301, 542
PaeI	GCATGC	1 cut(s)	542
PaeR7I	CTCGAG	2 cut(s)	309, 512
PctI	GAATGC	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	426, 571
PkrI	GCNGC	2 cut(s)	316, 531
PshBI	ATTAAT	1 cut(s)	189
PspXI	VCTCGAGB	2 cut(s)	309, 512
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PvuII	CAGCTG	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	116, 189, 348, 549
SatI	GCNGC	2 cut(s)	315, 530
SetI	ASST	5 cut(s)	33, 319, 359, 417, 459
Sfr274I	CTCGAG	2 cut(s)	309, 512
SlaI	CTCGAG	2 cut(s)	309, 512
SmiMI	CAYNNNNRTG	1 cut(s)	94
SmlI	CTYRAG	3 cut(s)	309, 347, 512
SmoI	CTYRAG	3 cut(s)	309, 347, 512
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	3 cut(s)	50, 107, 568
SsiI	CCGC	1 cut(s)	529
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	231, 416
StyI	CCWWGG	2 cut(s)	15, 133
TaaI	ACNGT	1 cut(s)	588
TaqI	TCGA	4 cut(s)	251, 310, 361, 513
TasI	AATT	3 cut(s)	50, 107, 568
TauI	GCSGC	1 cut(s)	532
Tru1I	TTAA	4 cut(s)	116, 189, 348, 549
Tru9I	TTAA	4 cut(s)	116, 189, 348, 549
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	5 cut(s)	39, 120, 341, 365, 462
Vha464I	CTTAAG	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	189
XceI	RCATGY	2 cut(s)	301, 542
XhoI	CTCGAG	2 cut(s)	309, 512
XmnI	GAANNNNTTC	2 cut(s)	426, 571
XspI	CTAG	2 cut(s)	231, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.