Rh3AG150000

RING-H2 zinc finger domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
13303533 .. 13310720
7188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG150000.1

Sequence Viewer

Length: 1335 bp
ATGGGGCATAGACATCCGTTCAACGCATCTCAAATTTTTGAGAGTGAAAATGATCCGAATTGGAACCATATGAACACAGAACACCCATTTGGACATCTGGCTAGGGCTGGGGCGGGAGAGAATGGTTCTTTGTTTTATCCAGTGGAAAATATGTTCAATGATGGAATGCATTTTCCTTCGAATTGGAACCCGCCTATGAGGTCATATGGGTATTCTCCCTTGAGCCACAGTGTTGATATGCCACCTCAATATCAACCGGATGCTTCTGGTCCATCTCATGATCCTTTTCAACATCCACCAAGTGCTAGTACTTTTGGTATGGCCAGTGGAAACTATGCTCACCATCCATCTTCGTCCAGCTATGACCGTCGAGCATTCCATGGTGTTGAGGGTGGTTTTGTTGATCTCACAATGAGCAATGGAAGAGGGCCACACAAGCGAAAAAGTCCTGGGATCCCTTCTGTAGCAGAGAGAGGCAGCACGAGCAGATACTACAGCGCTGGAAGTTCATCTGACCTCTCTAGATCTACAGAATTACAGCAGGAGAAAGTAAACATAGATACCCCACACATGCCGTGGGATCACATGACTATGATTCACCCCAGCTATAGAGGGAATGACCCAACAAGTAGGGGTGAGGGATCTATGAGAAATGTGAGAAGTCGGTCAGAACATGATTTGGAGTCCAACCTAGCAAGGACACATTTGTCGAACAATCCTATACATAGTTCGTATTCTGCAAATTTCCCTGTTGACCACCCTAGTACGATTGATCTTTCGGGTCAGAGCTCCAATGTTTTAGCCCCTGAATGGAACCATATTAGCGTATCACCTCCTCATGGAAGGATTTTACCTTCAGATACAAGTGGTTTTAGTCATGATCCCAACCACTTCCTTGTAGGCAGCAGTATGGTTAATGCTTCTGCCGAAGCTGGTGTATACCACCATGATTTCATTCCAACCAGGAGTGCTGCTGTTCCTCCAAGTTATCCTGGTGCCTTACCCCATACTGTAAGGGGAGTTCGCAGTAACTATTCTCAAAGATCTAGCCCAACCTTGAGGGCTTCTTCAAGCAGCATGAGGTTTGGGCCTGTGACACATCCAGATGAAGGATTGCAGTTGGTATCTGAGAGTTACCCAAGACATCCTAGGCCAGTGGCTACAGTTGGGTGGCGTAACAGCGACAGGAATGGTAGATCAAGGATGTCTAATGATAGATATCGAGTTTCTGAAGAGACTAGTCTCCATGATCGGTTTTCATCTGAGGTATGTAGCAAAGTTGATGCAGGGTATTTTATCTTGCCACATGTGAGAGAGGGTGCAGCTCCTTTTTGA

Protein Analysis

444

Amino Acids

49.01

Weight (kDa)

6.68

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 995
AccI GTMKAC 1 cut(s) 939
AciI CCGC 2 cut(s) 113, 191
AclWI GGATC 7 cut(s) 47, 275, 448, 461, 588, 649, 875
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 33, 742
AcuI CTGAAG 2 cut(s) 840, 1251
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 2 cut(s) 310, 766
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 3 cut(s) 810, 839, 1109
AflIII ACRYGT 1 cut(s) 1306
AgsI TTSAA 4 cut(s) 22, 157, 290, 1071
AhlI ACTAGT 1 cut(s) 1238
AjnI CCWGG 3 cut(s) 448, 962, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 5 cut(s) 360, 606, 789, 932, 1325
AluI AGCT 5 cut(s) 360, 606, 789, 932, 1325
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 2 cut(s) 1229, 1247
AlwI GGATC 7 cut(s) 47, 275, 448, 461, 588, 649, 875
Aor51HI AGCGCT 1 cut(s) 499
AoxI GGCC 4 cut(s) 321, 428, 1088, 1151
ApeKI GCWGC 5 cut(s) 477, 903, 971, 1074, 1322
ApoI RAATTY 2 cut(s) 33, 742
AspA2I CCTAGG 1 cut(s) 1148
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 3 cut(s) 269, 428, 1088
AsuHPI GGTGA 4 cut(s) 332, 590, 647, 822
AsuII TTCGAA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 269
AvrII CCTAGG 1 cut(s) 1148
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 1 cut(s) 791
BauI CACGAG 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 791
BbvI GCAGC 4 cut(s) 489, 915, 958, 1086
BccI CCATC 4 cut(s) 155, 280, 351, 355
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 3 cut(s) 450, 964, 993
BcoDI GTCTC 2 cut(s) 1229, 1247
BcuI ACTAGT 1 cut(s) 1238
BfaI CTAG 8 cut(s) 102, 306, 522, 692, 762, 1047, 1149, 1239
BfmI CTRYAG 5 cut(s) 462, 493, 528, 607, 1161
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 2 cut(s) 524, 1043
BisI GCNGC 5 cut(s) 478, 904, 972, 1075, 1323
BlnI CCTAGG 1 cut(s) 1148
BlsI GCNGC 5 cut(s) 479, 905, 973, 1076, 1324
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 3 cut(s) 450, 964, 993
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 269, 428, 1088
BmiI GGNNCC 5 cut(s) 65, 188, 455, 815, 997
BmrFI CCNGG 3 cut(s) 450, 964, 993
BmsI GCATC 3 cut(s) 35, 250, 1273
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 241, 1078
BsaBI GATNNNNATC 1 cut(s) 1218
BsaJI CCNNGG 4 cut(s) 379, 449, 575, 1148
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 810, 839, 1109
Bse1I ACTGG 3 cut(s) 140, 324, 1154
Bse3DI GCAATG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 1218
BseBI CCWGG 3 cut(s) 450, 964, 993
BseDI CCNNGG 4 cut(s) 379, 449, 575, 1148
BseGI GGATG 7 cut(s) 13, 265, 292, 343, 1099, 1144, 1209
BseJI GATNNNNATC 1 cut(s) 1218
BseLI CCNNNNNNNGG 3 cut(s) 810, 839, 1109
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 1119, 1254
BseNI ACTGG 3 cut(s) 140, 324, 1154
BseRI GAGGAG 1 cut(s) 825
BseXI GCAGC 4 cut(s) 489, 915, 958, 1086
BseYI CCCAGC 2 cut(s) 107, 602
BshFI GGCC 4 cut(s) 323, 430, 1090, 1153
BshNI GGYRCC 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 791
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 810, 839, 1109
BsmAI GTCTC 2 cut(s) 1229, 1247
BsmI GAATGC 2 cut(s) 171, 374
BsnI GGCC 4 cut(s) 323, 430, 1090, 1153
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 791
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 2 cut(s) 113, 191
BspANI GGCC 4 cut(s) 323, 430, 1090, 1153
BspCNI CTCAG 2 cut(s) 1120, 1255
BspHI TCATGA 2 cut(s) 277, 877
BspLI GGNNCC 5 cut(s) 65, 188, 455, 815, 997
BspPI GGATC 7 cut(s) 47, 275, 448, 461, 588, 649, 875
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 424
BsrI ACTGG 3 cut(s) 140, 324, 1154
BssECI CCNNGG 4 cut(s) 379, 449, 575, 1148
BssNAI GTATAC 1 cut(s) 940
BssSI CACGAG 1 cut(s) 481
BssT1I CCWWGG 2 cut(s) 379, 1148
Bst1107I GTATAC 1 cut(s) 940
Bst2BI CACGAG 1 cut(s) 481
Bst2UI CCWGG 3 cut(s) 450, 964, 993
Bst4CI ACNGT 4 cut(s) 230, 368, 1012, 1165
Bst6I CTCTTC 2 cut(s) 418, 1227
BstBI TTCGAA 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 1128, 1263
BstDSI CCRYGG 2 cut(s) 379, 575
BstF5I GGATG 7 cut(s) 13, 265, 292, 343, 1099, 1144, 1209
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstMAI GTCTC 2 cut(s) 1229, 1247
BstMWI GCNNNNNNNGC 2 cut(s) 436, 483
BstNI CCWGG 3 cut(s) 450, 964, 993
BstNSI RCATGY 2 cut(s) 574, 1310
BstSCI CCNGG 3 cut(s) 448, 962, 991
BstSFI CTRYAG 5 cut(s) 462, 493, 528, 607, 1161
BstV1I GCAGC 4 cut(s) 489, 915, 958, 1086
BstX2I RGATCY 4 cut(s) 453, 524, 641, 1043
BstYI RGATCY 4 cut(s) 453, 524, 641, 1043
BstZ17I GTATAC 1 cut(s) 940
BsuRI GGCC 4 cut(s) 323, 430, 1090, 1153
BtgI CCRYGG 2 cut(s) 379, 575
BtsCI GGATG 7 cut(s) 13, 265, 292, 343, 1099, 1144, 1209
BtsIMutI CAGTG 4 cut(s) 147, 235, 331, 1161
CciI TCATGA 2 cut(s) 277, 877
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 3 cut(s) 269, 428, 1088
Csp6I GTAC 2 cut(s) 309, 765
CviQI GTAC 2 cut(s) 309, 765
DdeI CTNAG 2 cut(s) 1128, 1263
DraIII CACNNNGTG 1 cut(s) 302
DrdI GACNNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 418, 1227
EarI CTCTTC 2 cut(s) 418, 1227
Ecl136II GAGCTC 1 cut(s) 789
Eco130I CCWWGG 2 cut(s) 379, 1148
Eco24I GRGCYC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 1220
Eco47I GGWCC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 789
Eco57I CTGAAG 2 cut(s) 840, 1251
EcoICRI GAGCTC 1 cut(s) 789
EcoRII CCWGG 3 cut(s) 448, 962, 991
EcoRV GATATC 1 cut(s) 1220
EcoT14I CCWWGG 2 cut(s) 379, 1148
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 2 cut(s) 379, 1148
FauI CCCGC 2 cut(s) 106, 198
FauNDI CATATG 2 cut(s) 69, 205
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 5 cut(s) 478, 904, 972, 1075, 1323
FokI GGATG 6 cut(s) 272, 279, 330, 1086, 1131, 1216
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 5 cut(s) 478, 904, 972, 1075, 1323
FspBI CTAG 8 cut(s) 102, 306, 522, 692, 762, 1047, 1149, 1239
GlaI GCGC 1 cut(s) 499
GluI GCNGC 5 cut(s) 478, 904, 972, 1075, 1323
GsaI CCCAGC 2 cut(s) 111, 606
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 4 cut(s) 323, 430, 1090, 1153
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 500
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 2 cut(s) 595, 683
HpaII CCGG 1 cut(s) 257
HphI GGTGA 4 cut(s) 332, 590, 647, 822
Hpy166II GTNNAC 3 cut(s) 553, 754, 940
Hpy188I TCNGA 8 cut(s) 57, 514, 670, 786, 859, 1129, 1231, 1264
Hpy188III TCNNGA 4 cut(s) 278, 522, 878, 1103
Hpy8I GTNNAC 3 cut(s) 553, 754, 940
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 5 cut(s) 186, 468, 837, 864, 1103
HpyCH4III ACNGT 4 cut(s) 230, 368, 1012, 1165
HpyCH4V TGCA 5 cut(s) 169, 740, 1117, 1286, 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 436, 483
HpyF3I CTNAG 2 cut(s) 1128, 1263
HspAI GCGC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 794, 1330
Lsp1109I GCAGC 4 cut(s) 489, 915, 958, 1086
LweI GCATC 3 cut(s) 35, 250, 1273
MaeI CTAG 8 cut(s) 102, 306, 522, 692, 762, 1047, 1149, 1239
MaeIII GTNAC 4 cut(s) 1028, 1093, 1133, 1175
MboII GAAGA 4 cut(s) 342, 435, 1059, 1244
MflI RGATCY 4 cut(s) 453, 524, 641, 1043
MhlI GDGCHC 1 cut(s) 791
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 33, 58, 181, 533, 742
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 711, 983
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 171
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 2 cut(s) 590, 1104
Msp20I TGGCCA 1 cut(s) 323
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 450, 964, 993
Mva1269I GAATGC 2 cut(s) 171, 374
MvaI CCWGG 3 cut(s) 450, 964, 993
MwoI GCNNNNNNNGC 2 cut(s) 436, 483
NcoI CCATGG 1 cut(s) 379
NdeI CATATG 2 cut(s) 69, 205
NlaIV GGNNCC 5 cut(s) 65, 188, 455, 815, 997
NmuCI GTSAC 1 cut(s) 1093
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 2 cut(s) 574, 1310
NspV TTCGAA 1 cut(s) 179
PagI TCATGA 2 cut(s) 277, 877
PciI ACATGT 1 cut(s) 1306
PctI GAATGC 2 cut(s) 171, 374
PfeI GAWTC 1 cut(s) 595
PkrI GCNGC 5 cut(s) 479, 905, 973, 1076, 1324
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PscI ACATGT 1 cut(s) 1306
Psp124BI GAGCTC 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 448, 962, 991
PspFI CCCAGC 2 cut(s) 107, 602
PspGI CCWGG 3 cut(s) 448, 962, 991
PspN4I GGNNCC 5 cut(s) 65, 188, 455, 815, 997
PspPI GGNCC 3 cut(s) 269, 428, 1088
PsrI GAACNNNNNNTAC 2 cut(s) 1005, 1037
PsuI RGATCY 4 cut(s) 453, 524, 641, 1043
RsaI GTAC 2 cut(s) 310, 766
RsaNI GTAC 2 cut(s) 309, 765
RseI CAYNNNNRTG 2 cut(s) 590, 1104
SacI GAGCTC 1 cut(s) 791
SaqAI TTAA 1 cut(s) 915
SatI GCNGC 5 cut(s) 478, 904, 972, 1075, 1323
Sau96I GGNCC 3 cut(s) 269, 428, 1088
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 3 cut(s) 450, 964, 993
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 3 cut(s) 35, 250, 1273
SfcI CTRYAG 5 cut(s) 462, 493, 528, 607, 1161
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 590, 1104
SmlI CTYRAG 2 cut(s) 220, 1057
SmoI CTYRAG 2 cut(s) 220, 1057
SpeI ACTAGT 1 cut(s) 1238
Sse9I AATT 5 cut(s) 33, 58, 181, 533, 742
SsiI CCGC 2 cut(s) 113, 191
SspMI CTAG 8 cut(s) 102, 306, 522, 692, 762, 1047, 1149, 1239
SstI GAGCTC 1 cut(s) 791
StyD4I CCNGG 3 cut(s) 448, 962, 991
StyI CCWWGG 2 cut(s) 379, 1148
TaaI ACNGT 4 cut(s) 230, 368, 1012, 1165
TaqI TCGA 4 cut(s) 179, 370, 710, 1222
TaqII GACCGA 1 cut(s) 654
TasI AATT 5 cut(s) 33, 58, 181, 533, 742
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 4 cut(s) 147, 235, 331, 1161
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 5 cut(s) 477, 903, 971, 1074, 1322
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 5 cut(s) 86, 498, 943, 1122, 1248
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 4 cut(s) 147, 235, 331, 1161
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 33, 742
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 2 cut(s) 574, 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XmaJI CCTAGG 1 cut(s) 1148
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 8 cut(s) 102, 306, 522, 692, 762, 1047, 1149, 1239
ZrmI AGTACT 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.