Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002650

Physical Location & Seq

Genomic Coordinates Reverse (-)

7874641 .. 7879017

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGTCGTAGTGTGAACAGTGGAGGAAGACAGCAGAGGAATTCGGCGGCTTCGGTCTCACAGAACGGTTCAGTTACGGCGCAGCAGCTGGCAATCGACGAGAGCCTGCTGGTTGATCCCAAGTTGTTGTTTATTGGGGCGAAAATTGGTGAGGGAGCTCATGGGAAAGTTTACGAAGGAAGGTACGGTAGTCGAATTGTGGCTATCAAAGTTCTCAATCGTGGGAGCACTTCTGAAGAAAGAGCTCAACTTGAGAATCGATTTGCCCGTGAAGTTAATATGATGACTCGAGTGAAGCATGAAAATCTTGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTAATGGTGATAGTTACTGAGCTATTACCTGGAATGTCACTCCGGAAGTACCTGATTAGTATTCGTCCCAATCCATTAGAACTTCATGTGGCCATTAAATATGCTCTTGACATCGCTCATGCAATGGAATGTTTACATGCCAATGGCATTATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAATCTGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACTGGGACTTACCGTTGGATGGCTCCTGAGCTATATAGCACTGTCACATTACGGCAAGGAGAGAAGAAGCATTACAATAACAAAGTTGATGTGTATAGCTTTGGGATCGTCTTATGGGAATTGTTGACCAACCGCATGCCCTTTGAAGGCATGTCTAATTTGCAGGCTGCCTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCGACTTCCAGAGGATGTCTCCCCTGATCTTGCCTTCATCATCCAGTCATGTTGGGTTGAGGACCCCAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAACTCTTTCCTCTTCAAACTCTCACCCCCACCCCTACCGGACAATGACAGCAACGAAGCAGAAGCAAGTAACGGTACCATGAGTGAACTATCTGTCCGGGCAAGAGGCAAGTTTTCTTTCATTAGGCAACTCTTCAATGCTAAGAAGAACAAGAACACACAATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

360

Amino Acids

40.36

Weight (kDa)

9.2

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	46 - 304	2.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	47 - 302	8.8e-56	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150
fragaria_vesca	FvH4_6g15650 FvH4_6g15650 FvH4_6g15650 FvH4_6g15650
malus_domestica	MD04G1100800.v1.1 MD12G1120500.v1.1
prunus_persica	Prupe.6G238800_v2.0.a1
pyrus_communis	pycom04g09560 pycom12g11950
rosa_chinensis	RchiOBHm_Chr3g0469341
rosa_laevigata	RLG00000024358
rosa_multiflora	Rmu_ssc0000394.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411970
rosa_rugosa	Rorug03G0100500 Rorug03G0100600 Rorug03G0100600 Rorug03G0100700 Rorug03G0100700 Rorug03G0100800 Rorug03G0100800
rosa_samantha	Rh3AG150000 Rh3BG173600 Rh3CG164600 Rh3DG201900
rosa_wichuraiana	Rw3G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	3 cut(s)	47, 739, 904
AclWI	GGATC	4 cut(s)	110, 329, 342, 719
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	3 cut(s)	185, 389, 988
AfiI	CCNNNNNNNGG	3 cut(s)	625, 752, 879
AgsI	TTSAA	4 cut(s)	752, 793, 928, 1048
AjnI	CCWGG	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	990, 1022
AluBI	AGCT	9 cut(s)	88, 158, 245, 326, 361, 550, 637, 705, 1080
AluI	AGCT	9 cut(s)	88, 158, 245, 326, 361, 550, 637, 705, 1080
Alw21I	GWGCWC	3 cut(s)	160, 230, 247
Alw26I	GTCTC	2 cut(s)	61, 829
AlwI	GGATC	4 cut(s)	110, 329, 342, 719
AlwNI	CAGNNNCTG	2 cut(s)	88, 608
Ama87I	CYCGRG	1 cut(s)	288
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	3 cut(s)	429, 803, 881
ApeKI	GCWGC	5 cut(s)	82, 85, 773, 782, 785
ApoI	RAATTY	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	868
AsuC2I	CCSGG	1 cut(s)	1010
AsuHPI	GGTGA	3 cut(s)	161, 358, 927
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	868
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BalI	TGGCCA	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	986
BanII	GRGCYC	2 cut(s)	160, 247
BarI	GAAGNNNNNNTAC	2 cut(s)	662, 694
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	3 cut(s)	160, 230, 247
BbvI	GCAGC	5 cut(s)	94, 97, 760, 769, 772
BccI	CCATC	1 cut(s)	619
BceAI	ACGGC	3 cut(s)	93, 543, 674
BciT130I	CCWGG	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	1010
BcoDI	GTCTC	2 cut(s)	61, 829
BfmI	CTRYAG	1 cut(s)	600
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	6 cut(s)	48, 83, 86, 774, 783, 786
BlsI	GCNGC	6 cut(s)	49, 84, 87, 775, 784, 787
Bme1390I	CCNGG	2 cut(s)	369, 1010
Bme18I	GGWCC	1 cut(s)	868
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	4 cut(s)	336, 630, 870, 988
BmrFI	CCNGG	2 cut(s)	369, 1010
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	1010
Bsa29I	ATCGAT	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	381, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 752, 879
Bse1I	ACTGG	2 cut(s)	613, 850
Bse3DI	GCAATG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	259
BseGI	GGATG	4 cut(s)	630, 826, 846, 900
BseLI	CCNNNNNNNGG	3 cut(s)	625, 752, 879
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	3 cut(s)	348, 579, 624
BseNI	ACTGG	2 cut(s)	613, 850
BseXI	GCAGC	5 cut(s)	94, 97, 760, 769, 772
BshFI	GGCC	3 cut(s)	431, 805, 883
BshNI	GGYRCC	1 cut(s)	986
BshVI	ATCGAT	1 cut(s)	259
BsiHKAI	GWGCWC	3 cut(s)	160, 230, 247
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	382, 950, 1009
BslFI	GGGAC	2 cut(s)	390, 625
BslI	CCNNNNNNNGG	3 cut(s)	625, 752, 879
BsmAI	GTCTC	2 cut(s)	61, 829
BsmFI	GGGAC	2 cut(s)	390, 625
BsnI	GGCC	3 cut(s)	431, 805, 883
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	160, 230, 247
Bsp13I	TCCGGA	1 cut(s)	381
Bsp143I	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
BspACI	CCGC	3 cut(s)	47, 739, 904
BspANI	GGCC	3 cut(s)	431, 805, 883
BspCNI	CTCAG	3 cut(s)	349, 580, 625
BspDI	ATCGAT	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	336, 630, 870, 988
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	4 cut(s)	110, 329, 342, 719
BspT107I	GGYRCC	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	613, 850
BssMI	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	7 cut(s)	20, 68, 188, 583, 620, 649, 986
Bst6I	CTCTTC	2 cut(s)	929, 1049
BstC8I	GCNNGC	6 cut(s)	90, 107, 552, 743, 771, 908
BstDEI	CTNAG	5 cut(s)	357, 588, 633, 878, 1053
BstF5I	GGATG	4 cut(s)	630, 826, 846, 900
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	6 cut(s)	118, 337, 502, 714, 835, 900
BstMAI	GTCTC	2 cut(s)	61, 829
BstMBI	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	779, 782, 802
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	4 cut(s)	479, 745, 760, 910
BstSCI	CCNGG	2 cut(s)	367, 1008
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	5 cut(s)	94, 97, 760, 769, 772
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	334, 499
BstYI	RGATCY	2 cut(s)	334, 499
Bsu15I	ATCGAT	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	431, 805, 883
BsuTUI	ATCGAT	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	4 cut(s)	630, 826, 846, 900
BtsIMutI	CAGTG	2 cut(s)	25, 645
Cac8I	GCNNGC	6 cut(s)	90, 107, 552, 743, 771, 908
CaiI	CAGNNNCTG	2 cut(s)	88, 608
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	868
ClaI	ATCGAT	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	184, 388, 987
CviQI	GTAC	3 cut(s)	184, 388, 987
DdeI	CTNAG	5 cut(s)	357, 588, 633, 878, 1053
DpnI	GATC	6 cut(s)	117, 336, 501, 713, 834, 899
DpnII	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	929, 1049
EarI	CTCTTC	2 cut(s)	929, 1049
Ecl136II	GAGCTC	2 cut(s)	158, 245
Eco147I	AGGCCT	2 cut(s)	805, 883
Eco24I	GRGCYC	2 cut(s)	160, 247
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	868
Eco53kI	GAGCTC	2 cut(s)	158, 245
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	288
EcoICRI	GAGCTC	2 cut(s)	158, 245
EcoO109I	RGGNCCY	1 cut(s)	868
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	160, 247
FaqI	GGGAC	2 cut(s)	390, 625
Fnu4HI	GCNGC	6 cut(s)	48, 83, 86, 774, 783, 786
FokI	GGATG	4 cut(s)	637, 833, 833, 887
FriOI	GRGCYC	2 cut(s)	160, 247
Fsp4HI	GCNGC	6 cut(s)	48, 83, 86, 774, 783, 786
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	6 cut(s)	48, 83, 86, 774, 783, 786
HaeIII	GGCC	3 cut(s)	431, 805, 883
HapII	CCGG	3 cut(s)	382, 950, 1009
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	3 cut(s)	4, 256, 286
HpaII	CCGG	3 cut(s)	382, 950, 1009
HphI	GGTGA	3 cut(s)	161, 358, 927
Hpy166II	GTNNAC	5 cut(s)	16, 172, 473, 732, 998
Hpy188I	TCNGA	2 cut(s)	235, 537
Hpy188III	TCNNGA	4 cut(s)	382, 446, 632, 815
Hpy8I	GTNNAC	5 cut(s)	16, 172, 473, 732, 998
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	170, 174, 746, 850
HpyCH4III	ACNGT	7 cut(s)	20, 68, 188, 583, 620, 649, 986
HpyCH4IV	ACGT	1 cut(s)	887
HpyCH4V	TGCA	5 cut(s)	461, 554, 569, 602, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	779, 782, 802
HpyF3I	CTNAG	5 cut(s)	357, 588, 633, 878, 1053
HpySE526I	ACGT	1 cut(s)	887
HspAI	GCGC	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	381
KpnI	GGTACC	1 cut(s)	990
Kzo9I	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
LmnI	GCTCC	4 cut(s)	155, 225, 323, 634
Lsp1109I	GCAGC	5 cut(s)	94, 97, 760, 769, 772
MaeII	ACGT	1 cut(s)	887
MaeIII	GTNAC	6 cut(s)	73, 352, 375, 583, 649, 980
MalI	GATC	6 cut(s)	117, 336, 501, 713, 834, 899
MboI	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
MboII	GAAGA	7 cut(s)	39, 248, 587, 682, 916, 1036, 1069
MflI	RGATCY	2 cut(s)	334, 499
MhlI	GDGCHC	3 cut(s)	160, 230, 247
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	5 cut(s)	40, 144, 195, 725, 763
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	13, 280
MmeI	TCCRAC	1 cut(s)	602
Mox20I	TGGCCA	1 cut(s)	431
MroI	TCCGGA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	2 cut(s)	276, 435
MslI	CAYNNNNRTG	2 cut(s)	480, 905
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	3 cut(s)	382, 950, 1009
MspR9I	CCNGG	2 cut(s)	369, 1010
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	779, 782, 802
NciI	CCSGG	1 cut(s)	1010
NdeII	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
NlaIV	GGNNCC	4 cut(s)	336, 630, 870, 988
NmuCI	GTSAC	3 cut(s)	375, 583, 649
NspI	RCATGY	4 cut(s)	479, 745, 760, 910
PaeI	GCATGC	2 cut(s)	745, 910
PaeR7I	CTCGAG	1 cut(s)	288
PceI	AGGCCT	2 cut(s)	805, 883
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	49, 84, 87, 775, 784, 787
PleI	GAGTC	2 cut(s)	12, 280
PpsI	GAGTC	2 cut(s)	12, 280
PpuMI	RGGWCCY	1 cut(s)	868
Psp124BI	GAGCTC	2 cut(s)	160, 247
Psp5II	RGGWCCY	1 cut(s)	868
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	336, 630, 870, 988
PspPI	GGNCC	1 cut(s)	868
PspPPI	RGGWCCY	1 cut(s)	868
PspXI	VCTCGAGB	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	2 cut(s)	88, 608
PsuI	RGATCY	2 cut(s)	334, 499
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	3 cut(s)	185, 389, 988
RsaNI	GTAC	3 cut(s)	184, 388, 987
RseI	CAYNNNNRTG	2 cut(s)	480, 905
SacI	GAGCTC	2 cut(s)	160, 247
SaqAI	TTAA	2 cut(s)	276, 435
SatI	GCNGC	6 cut(s)	48, 83, 86, 774, 783, 786
Sau3AI	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
Sau96I	GGNCC	1 cut(s)	868
SchI	GAGTC	2 cut(s)	13, 280
ScrFI	CCNGG	2 cut(s)	369, 1010
SduI	GDGCHC	3 cut(s)	160, 230, 247
SfcI	CTRYAG	1 cut(s)	600
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	868
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	480, 905
SmlI	CTYRAG	2 cut(s)	251, 288
SmoI	CTYRAG	2 cut(s)	251, 288
SphI	GCATGC	2 cut(s)	745, 910
Sse9I	AATT	5 cut(s)	40, 144, 195, 725, 763
SseBI	AGGCCT	2 cut(s)	805, 883
SsiI	CCGC	3 cut(s)	47, 739, 904
SstI	GAGCTC	2 cut(s)	160, 247
StuI	AGGCCT	2 cut(s)	805, 883
StyD4I	CCNGG	2 cut(s)	367, 1008
TaaI	ACNGT	7 cut(s)	20, 68, 188, 583, 620, 649, 986
TaiI	ACGT	1 cut(s)	890
TaqI	TCGA	5 cut(s)	96, 193, 259, 289, 808
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	40, 144, 195, 725, 763
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	276, 435
Tru9I	TTAA	2 cut(s)	276, 435
TscAI	CASTG	2 cut(s)	25, 652
TseFI	GTSAC	3 cut(s)	375, 583, 649
TseI	GCWGC	5 cut(s)	82, 85, 773, 782, 785
Tsp45I	GTSAC	3 cut(s)	375, 583, 649
TspDTI	ATGAA	4 cut(s)	315, 413, 832, 1021
TspRI	CASTG	2 cut(s)	25, 652
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	4 cut(s)	479, 745, 760, 910
XhoI	CTCGAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.