Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002650

Physical Location & Seq

Genomic Coordinates Reverse (-)

13936176 .. 13938700

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG164600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGGGCATAGACATCCGTTCAACGCATCTCAAATTTTTGAGAGTGAAAATGATCCGAATTGGAACCATATGAACACAGAACACCCATTTGGACATCTGGCTAGGGCTGGGGCGGGAGAGAATGGTTCTTTGTTTTATCCAGTGGAAAATATGTTCAATGATGGAATGCATTTTCCTTCGAATTGGAACCCGCCTATGAGGTCATATGGGTATTCTCCCTTGAGCCACAGTGTTGATATGCCACCTCAATATCAACCGGATGCTTCTGGTCCATCTCATGATCCTTTTCAACATCCACCAAGTGCTAGTACTTTTGGTATGGCCAGTGGAAACTATGCTCACCATCCATCTTCGTCCAGCTATGACCGTCGAGCATTCCATGGTGTTGAGGGTGGTTTTGTTGATCTCACAATGAGCAATGGAAGAGGGCCACACAAGCGAAAAAGTCCTGGGATCCCTTCTGTAGCAGAGAGAGGCAGCACGAGCAGATACTACAGCGCTGGAAGTTCATCTGACCTCTCTAGATCTACAGAATTACAGCAGGAGAAAGTAAACATAGATACCCCACACATGCCGTGGGATCACATGACTATGATTCACCCCAGCTATAGAGGGAATGACCCAACAAGTAGGGGTGAGGGATCTATGAGAAATGTGAGAAGTCGGTCAGAACATGATTTGGAGTCCAACCTAGCAAGGACACATTTGTCGAACAATCCTATACATAGTTCGTATTCTGCAAATTTCCCTGTTGACCACCCTAGTACGATTGATCTTTCGGGTCAGAGCTCCAATGTTTTAGCCCCTGAATGGAACCATATTAGCGTATCACCTCCTCATGGAAGGATTTTACCTTCAGATACAAGTGGTTTTAGTCATGATCCCAACCACTTCCTTGTAGGCAGCAGTATGGTTAATGCTTCTGCCGAAGCTGGTGTATACCACCATGATTTCATTCCAACCAGGAGTGCTGCTGTTCCTCCAAGTTATCCTGGTGCCTTACCCCATACTGTAAGGGGAGTTCGCAGTAACTATTCTCAAAGATCTAGCCCAACCTTGAGGGCTTCTTCAAGCAGCATGAGGTTTGGGCCTGTGACACATCCAGATGAAGGATTGCAGTTGGTATCTGAGAGTTACCCAAGACATCCTAGGCCAGTGGCTACAGTTGGGTGGCGTAACAGCGACAGGAATGGTAGATCAAGGATGTCTAATGATAGATATCGAGTTTCTGAAGAGACTAGTCTCCATGATCGGTTTTCATCTGAGGGTTTTATGATTGCTGATCGGCCAGCTTTCTATGGTTCCAGAAGTATGCTTGATCATCATAGAGACTTGAGACTAGACATAGACAACATGAGTTACGAGGAACTCCTTGCATTGGGGGAAAGGATTGGGCATGTCAACACAGGTGTATCTGAAGATCTAATACCGAAGTGTTTGACAGAAACAATATATTGTTCTTCAGACCTAAACCAGGAGGAAGGCACATGTGTAATCTGCCTGGAAGAGTACGAGGATAGGGATGATGTTGCAGCACTGAAAACGTGCGGCCATGATTACCATGTGACTTGCATCAAAAAGTGGTTGTCAATGAAAAATTCTTGTCCGATCTGCAAAGGTTCTGCTCTTGCCGATAATACTAAGGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

550

Amino Acids

60.98

Weight (kDa)

6.24

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	486 - 539	3.6e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	496 - 539	6.6e-14	Ring finger domain
zf-C3HC4	PF00097	497 - 538	2.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	497 - 538	4.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	497 - 525	2.4e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150
fragaria_vesca	FvH4_6g15650 FvH4_6g15650 FvH4_6g15650 FvH4_6g15650
malus_domestica	MD04G1100800.v1.1 MD12G1120500.v1.1
prunus_persica	Prupe.6G238800_v2.0.a1
pyrus_communis	pycom04g09560 pycom12g11950
rosa_chinensis	RchiOBHm_Chr3g0469341
rosa_laevigata	RLG00000024358
rosa_multiflora	Rmu_ssc0000394.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411970
rosa_rugosa	Rorug03G0100500 Rorug03G0100600 Rorug03G0100600 Rorug03G0100700 Rorug03G0100700 Rorug03G0100800 Rorug03G0100800
rosa_samantha	Rh3AG150000 Rh3BG173600 Rh3CG164600 Rh3DG201900
rosa_wichuraiana	Rw3G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	995
AccI	GTMKAC	1 cut(s)	939
AciI	CCGC	3 cut(s)	113, 191, 1548
AclWI	GGATC	7 cut(s)	47, 275, 448, 461, 588, 649, 875
AcoI	YGGCCR	3 cut(s)	321, 1286, 1549
AcsI	RAATTY	3 cut(s)	33, 742, 1597
AcuI	CTGAAG	4 cut(s)	840, 1251, 1437, 1446
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	3 cut(s)	310, 766, 1511
AfeI	AGCGCT	1 cut(s)	499
AfiI	CCNNNNNNNGG	5 cut(s)	810, 839, 1109, 1378, 1474
AflIII	ACRYGT	1 cut(s)	1487
AgsI	TTSAA	4 cut(s)	22, 157, 290, 1071
AhlI	ACTAGT	1 cut(s)	1238
AjnI	CCWGG	5 cut(s)	448, 962, 991, 1473, 1500
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	360, 606, 789, 932, 1292
AluI	AGCT	5 cut(s)	360, 606, 789, 932, 1292
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	4 cut(s)	1229, 1247, 1323, 1330
AlwI	GGATC	7 cut(s)	47, 275, 448, 461, 588, 649, 875
Aor51HI	AGCGCT	1 cut(s)	499
AoxI	GGCC	6 cut(s)	321, 428, 1088, 1151, 1286, 1549
ApeKI	GCWGC	5 cut(s)	477, 903, 971, 1074, 1532
ApoI	RAATTY	3 cut(s)	33, 742, 1597
AspA2I	CCTAGG	1 cut(s)	1148
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	3 cut(s)	269, 428, 1088
AsuHPI	GGTGA	4 cut(s)	332, 590, 647, 822
AsuII	TTCGAA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	269
AvrII	CCTAGG	1 cut(s)	1148
BaeI	ACNNNNGTAYC	2 cut(s)	1395, 1428
BalI	TGGCCA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	995
BanII	GRGCYC	1 cut(s)	791
BarI	GAAGNNNNNNTAC	2 cut(s)	1410, 1442
BauI	CACGAG	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	5 cut(s)	489, 915, 958, 1086, 1544
BccI	CCATC	4 cut(s)	155, 280, 351, 355
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	5 cut(s)	450, 964, 993, 1475, 1502
BclI	TGATCA	1 cut(s)	1318
BcoDI	GTCTC	4 cut(s)	1229, 1247, 1323, 1330
BcuI	ACTAGT	1 cut(s)	1238
BfaI	CTAG	9 cut(s)	102, 306, 522, 692, 762, 1047, 1149, 1239, 1340
BfmI	CTRYAG	5 cut(s)	462, 493, 528, 607, 1161
BfoI	RGCGCY	1 cut(s)	501
BglII	AGATCT	3 cut(s)	524, 1043, 1420
BisI	GCNGC	6 cut(s)	478, 904, 972, 1075, 1533, 1549
BlnI	CCTAGG	1 cut(s)	1148
BlsI	GCNGC	6 cut(s)	479, 905, 973, 1076, 1534, 1550
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	5 cut(s)	450, 964, 993, 1475, 1502
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	269, 428, 1088
BmiI	GGNNCC	6 cut(s)	65, 188, 455, 815, 997, 1303
BmrFI	CCNGG	5 cut(s)	450, 964, 993, 1475, 1502
BmsI	GCATC	3 cut(s)	35, 250, 1581
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	3 cut(s)	241, 1078, 1354
BsaBI	GATNNNNATC	1 cut(s)	1218
BsaJI	CCNNGG	4 cut(s)	379, 449, 575, 1148
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	5 cut(s)	810, 839, 1109, 1378, 1474
Bse1I	ACTGG	3 cut(s)	140, 324, 1154
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	1218
BseBI	CCWGG	5 cut(s)	450, 964, 993, 1475, 1502
BseDI	CCNNGG	4 cut(s)	379, 449, 575, 1148
BseGI	GGATG	8 cut(s)	13, 265, 292, 343, 1099, 1144, 1209, 1528
BseJI	GATNNNNATC	1 cut(s)	1218
BseLI	CCNNNNNNNGG	5 cut(s)	810, 839, 1109, 1378, 1474
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	1119, 1254
BseNI	ACTGG	3 cut(s)	140, 324, 1154
BseRI	GAGGAG	1 cut(s)	825
BseXI	GCAGC	5 cut(s)	489, 915, 958, 1086, 1544
BseYI	CCCAGC	2 cut(s)	107, 602
BshFI	GGCC	6 cut(s)	323, 430, 1090, 1153, 1288, 1551
BshNI	GGYRCC	1 cut(s)	995
BsiHKAI	GWGCWC	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	5 cut(s)	810, 839, 1109, 1378, 1474
BsmAI	GTCTC	4 cut(s)	1229, 1247, 1323, 1330
BsmI	GAATGC	2 cut(s)	171, 374
BsnI	GGCC	6 cut(s)	323, 430, 1090, 1153, 1288, 1551
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	3 cut(s)	113, 191, 1548
BspANI	GGCC	6 cut(s)	323, 430, 1090, 1153, 1288, 1551
BspCNI	CTCAG	2 cut(s)	1120, 1255
BspHI	TCATGA	2 cut(s)	277, 877
BspLI	GGNNCC	6 cut(s)	65, 188, 455, 815, 997, 1303
BspPI	GGATC	7 cut(s)	47, 275, 448, 461, 588, 649, 875
BspT104I	TTCGAA	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	3 cut(s)	140, 324, 1154
BssECI	CCNNGG	4 cut(s)	379, 449, 575, 1148
BssNAI	GTATAC	1 cut(s)	940
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	2 cut(s)	379, 1148
Bst1107I	GTATAC	1 cut(s)	940
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	5 cut(s)	450, 964, 993, 1475, 1502
Bst4CI	ACNGT	4 cut(s)	230, 368, 1012, 1165
Bst6I	CTCTTC	3 cut(s)	418, 1227, 1500
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	1290
BstDEI	CTNAG	3 cut(s)	1128, 1263, 1641
BstDSI	CCRYGG	2 cut(s)	379, 575
BstENI	CCTNNNNNAGG	1 cut(s)	1472
BstF5I	GGATG	8 cut(s)	13, 265, 292, 343, 1099, 1144, 1209, 1528
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	500
BstMAI	GTCTC	4 cut(s)	1229, 1247, 1323, 1330
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 483
BstNI	CCWGG	5 cut(s)	450, 964, 993, 1475, 1502
BstNSI	RCATGY	3 cut(s)	574, 1400, 1491
BstSCI	CCNGG	5 cut(s)	448, 962, 991, 1473, 1500
BstSFI	CTRYAG	5 cut(s)	462, 493, 528, 607, 1161
BstV1I	GCAGC	5 cut(s)	489, 915, 958, 1086, 1544
BstX2I	RGATCY	5 cut(s)	453, 524, 641, 1043, 1420
BstYI	RGATCY	5 cut(s)	453, 524, 641, 1043, 1420
BstZ17I	GTATAC	1 cut(s)	940
BsuRI	GGCC	6 cut(s)	323, 430, 1090, 1153, 1288, 1551
BtgI	CCRYGG	2 cut(s)	379, 575
BtsCI	GGATG	8 cut(s)	13, 265, 292, 343, 1099, 1144, 1209, 1528
BtsIMutI	CAGTG	5 cut(s)	147, 235, 331, 1161, 1535
Cac8I	GCNNGC	1 cut(s)	1290
CciI	TCATGA	2 cut(s)	277, 877
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	269, 428, 1088
Csp6I	GTAC	3 cut(s)	309, 765, 1510
CviQI	GTAC	3 cut(s)	309, 765, 1510
DdeI	CTNAG	3 cut(s)	1128, 1263, 1641
DraIII	CACNNNGTG	1 cut(s)	302
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	3 cut(s)	321, 1286, 1549
Eam1104I	CTCTTC	3 cut(s)	418, 1227, 1500
EarI	CTCTTC	3 cut(s)	418, 1227, 1500
Ecl136II	GAGCTC	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	379, 1148
Eco24I	GRGCYC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	1220
Eco47I	GGWCC	1 cut(s)	269
Eco47III	AGCGCT	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	789
Eco57I	CTGAAG	4 cut(s)	840, 1251, 1437, 1446
EcoICRI	GAGCTC	1 cut(s)	789
EcoNI	CCTNNNNNAGG	1 cut(s)	1472
EcoRII	CCWGG	5 cut(s)	448, 962, 991, 1473, 1500
EcoRV	GATATC	1 cut(s)	1220
EcoT14I	CCWWGG	2 cut(s)	379, 1148
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	379, 1148
FauI	CCCGC	2 cut(s)	106, 198
FauNDI	CATATG	2 cut(s)	69, 205
FbaI	TGATCA	1 cut(s)	1318
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	6 cut(s)	478, 904, 972, 1075, 1533, 1549
FokI	GGATG	7 cut(s)	272, 279, 330, 1086, 1131, 1216, 1535
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	6 cut(s)	478, 904, 972, 1075, 1533, 1549
FspBI	CTAG	9 cut(s)	102, 306, 522, 692, 762, 1047, 1149, 1239, 1340
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	6 cut(s)	478, 904, 972, 1075, 1533, 1549
GsaI	CCCAGC	2 cut(s)	111, 606
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	6 cut(s)	323, 430, 1090, 1153, 1288, 1551
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HincII	GTYRAC	2 cut(s)	754, 1402
HindII	GTYRAC	2 cut(s)	754, 1402
HinfI	GANTC	2 cut(s)	595, 683
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	4 cut(s)	332, 590, 647, 822
Hpy166II	GTNNAC	4 cut(s)	553, 754, 940, 1402
Hpy188III	TCNNGA	5 cut(s)	278, 522, 878, 1103, 1305
Hpy8I	GTNNAC	4 cut(s)	553, 754, 940, 1402
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	186, 468, 837, 864, 1103, 1475
HpyCH4III	ACNGT	4 cut(s)	230, 368, 1012, 1165
HpyCH4IV	ACGT	1 cut(s)	1544
HpyCH4V	TGCA	7 cut(s)	169, 740, 1117, 1376, 1532, 1572, 1614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 483
HpyF3I	CTNAG	3 cut(s)	1128, 1263, 1641
HpySE526I	ACGT	1 cut(s)	1544
HspAI	GCGC	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	1318
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	5 cut(s)	489, 915, 958, 1086, 1544
LweI	GCATC	3 cut(s)	35, 250, 1581
MaeI	CTAG	9 cut(s)	102, 306, 522, 692, 762, 1047, 1149, 1239, 1340
MaeII	ACGT	1 cut(s)	1544
MaeIII	GTNAC	6 cut(s)	1028, 1093, 1133, 1175, 1358, 1564
MboII	GAAGA	7 cut(s)	342, 435, 1059, 1244, 1430, 1452, 1517
MflI	RGATCY	5 cut(s)	453, 524, 641, 1043, 1420
MhlI	GDGCHC	1 cut(s)	791
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	6 cut(s)	33, 58, 181, 533, 742, 1597
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	2 cut(s)	711, 983
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	915
MslI	CAYNNNNRTG	2 cut(s)	590, 1104
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	5 cut(s)	450, 964, 993, 1475, 1502
Mva1269I	GAATGC	2 cut(s)	171, 374
MvaI	CCWGG	5 cut(s)	450, 964, 993, 1475, 1502
MwoI	GCNNNNNNNGC	2 cut(s)	436, 483
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	2 cut(s)	69, 205
NlaIV	GGNNCC	6 cut(s)	65, 188, 455, 815, 997, 1303
NmuCI	GTSAC	2 cut(s)	1093, 1564
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	3 cut(s)	574, 1400, 1491
NspV	TTCGAA	1 cut(s)	179
PagI	TCATGA	2 cut(s)	277, 877
PciI	ACATGT	1 cut(s)	1487
PctI	GAATGC	2 cut(s)	171, 374
PfeI	GAWTC	1 cut(s)	595
PkrI	GCNGC	6 cut(s)	479, 905, 973, 1076, 1534, 1550
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PscI	ACATGT	1 cut(s)	1487
Psp124BI	GAGCTC	1 cut(s)	791
Psp6I	CCWGG	5 cut(s)	448, 962, 991, 1473, 1500
PspFI	CCCAGC	2 cut(s)	107, 602
PspGI	CCWGG	5 cut(s)	448, 962, 991, 1473, 1500
PspN4I	GGNNCC	6 cut(s)	65, 188, 455, 815, 997, 1303
PspPI	GGNCC	3 cut(s)	269, 428, 1088
PsrI	GAACNNNNNNTAC	2 cut(s)	1005, 1037
PsuI	RGATCY	5 cut(s)	453, 524, 641, 1043, 1420
RsaI	GTAC	3 cut(s)	310, 766, 1511
RsaNI	GTAC	3 cut(s)	309, 765, 1510
RseI	CAYNNNNRTG	2 cut(s)	590, 1104
SacI	GAGCTC	1 cut(s)	791
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	6 cut(s)	478, 904, 972, 1075, 1533, 1549
Sau96I	GGNCC	3 cut(s)	269, 428, 1088
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	5 cut(s)	450, 964, 993, 1475, 1502
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	3 cut(s)	35, 250, 1581
SfcI	CTRYAG	5 cut(s)	462, 493, 528, 607, 1161
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	590, 1104
SmlI	CTYRAG	3 cut(s)	220, 1057, 1333
SmoI	CTYRAG	3 cut(s)	220, 1057, 1333
SpeI	ACTAGT	1 cut(s)	1238
Sse9I	AATT	6 cut(s)	33, 58, 181, 533, 742, 1597
SsiI	CCGC	3 cut(s)	113, 191, 1548
SspMI	CTAG	9 cut(s)	102, 306, 522, 692, 762, 1047, 1149, 1239, 1340
SstI	GAGCTC	1 cut(s)	791
StyD4I	CCNGG	5 cut(s)	448, 962, 991, 1473, 1500
StyI	CCWWGG	2 cut(s)	379, 1148
TaaI	ACNGT	4 cut(s)	230, 368, 1012, 1165
TaiI	ACGT	1 cut(s)	1547
TaqI	TCGA	4 cut(s)	179, 370, 710, 1222
TaqII	GACCGA	1 cut(s)	654
TasI	AATT	6 cut(s)	33, 58, 181, 533, 742, 1597
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	1 cut(s)	1551
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	5 cut(s)	147, 235, 331, 1161, 1542
TseFI	GTSAC	2 cut(s)	1093, 1564
TseI	GCWGC	5 cut(s)	477, 903, 971, 1074, 1532
Tsp45I	GTSAC	2 cut(s)	1093, 1564
TspDTI	ATGAA	6 cut(s)	86, 498, 943, 1122, 1248, 1607
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	5 cut(s)	147, 235, 331, 1161, 1542
VpaK11BI	GGWCC	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	1472
XapI	RAATTY	3 cut(s)	33, 742, 1597
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	3 cut(s)	574, 1400, 1491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XmaJI	CCTAGG	1 cut(s)	1148
XmiI	GTMKAC	1 cut(s)	939
XspI	CTAG	9 cut(s)	102, 306, 522, 692, 762, 1047, 1149, 1239, 1340
ZrmI	AGTACT	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.