Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002650

Physical Location & Seq

Genomic Coordinates Forward (+)

18338618 .. 18345799

Gene Structure 7182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG201900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTCAATGATGGAATGCATTTTCCTTCGAATTGGAACCCGCCTATGAGGTCATATGGGTATTCTCCCTTGAGCCACAGTGTTGATATGCCACCTCAATATCAACCAGATGCTTCTGGTCCATCTCATGATCCTTTTCAACATCCACCAAGTGCTAGTACTTTTGGTATGGCCAGTGGAAACTATGCTCACCATCCATCTTCGTCCAGCTATGACCGTCGAGCATTCCATGGTGTTGAGGGTGGTTTTGTTGATCTCACAATGAGCAATGGAAGAGGGCCACACAAGCGAAAAAGTCCTGGGATCCCTTCTGTAGCAGAGAGAGGCAGCACGAGCAGATACTACGGCGCTGGAAGTTCCTCTGACCTCTCTAGATCTACAGAATTACAGCAGGAGAAAGTAAACATAGATACCCCACACATGCCGTGGGATCACATGACTATGATTCACCCCAGCTATAGAGGAAATGACCCTACAAGTAGGGGTGAGGGATCTATGAGAAATGTGAGAAGCCGGTCAGAACATGATTTGGAGTCCAACCTAGCAAGGACACATCTATCGAACAATCCTATACATAGTTCGTATTCTGCAAATTTCCCTGTTGACCACCCTAGTACGATTGATCTTTCGGGTCAGAGTTCCAATGTTTTAGCCCCTGAATGGAACCATATTAGCGTATCGCCTCCTCATGGAAGGATTTTACCTTCAGATACAAGTGGTTTTAGTCATGATCCCAACCACTTCCTTGTAGGCAGCAGTATGGTTAATACTTCTGCCGAAGCTGGCGTATACCACCATGATTTCATTCCAACCAGGAGTGCTGCTGTTCCTCCAAGTTATCCTGGTGCCTTACCCCATACTGTAAGGGGAGTTCGCAGTAACTATTCTCAAAGATCTAGCCCAACCTTCAGGGCTTCTTCAAGCAGCATGAGGTTTGGGCCTGTGACACATCCAGATGAAGGATTGCAGTTGGTATCTGAGAGTTACCCAAGACATCCTAGGCCAGTGGCTACAGTTGGGTGGCGTAACAGCGACAGGAATGGTAGATCAAGGATGTCTAATGATAGATATCGAGTTTCTGAAGAGACTAGTCTCCATGATCGGTTTTCATCTGAGGTATGTAGCAAAGTTGATGCAGGGTATTTTAGCTTGCCACATGTGAGAGAGGGCGCAGCTCCTTTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

395

Amino Acids

43.53

Weight (kDa)

7.47

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150
fragaria_vesca	FvH4_6g15650 FvH4_6g15650 FvH4_6g15650 FvH4_6g15650
malus_domestica	MD04G1100800.v1.1 MD12G1120500.v1.1
prunus_persica	Prupe.6G238800_v2.0.a1
pyrus_communis	pycom04g09560 pycom12g11950
rosa_chinensis	RchiOBHm_Chr3g0469341
rosa_laevigata	RLG00000024358
rosa_multiflora	Rmu_ssc0000394.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411970
rosa_rugosa	Rorug03G0100500 Rorug03G0100600 Rorug03G0100600 Rorug03G0100700 Rorug03G0100700 Rorug03G0100800 Rorug03G0100800
rosa_samantha	Rh3AG150000 Rh3BG173600 Rh3CG164600 Rh3DG201900
rosa_wichuraiana	Rw3G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	6 cut(s)	125, 298, 311, 438, 499, 725
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	3 cut(s)	690, 892, 1101
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	160, 616
AfiI	CCNNNNNNNGG	3 cut(s)	660, 689, 959
AflIII	ACRYGT	1 cut(s)	1156
AgsI	TTSAA	3 cut(s)	7, 140, 921
AhlI	ACTAGT	1 cut(s)	1088
AjnI	CCWGG	3 cut(s)	298, 812, 841
AluBI	AGCT	5 cut(s)	210, 456, 782, 1149, 1175
AluI	AGCT	5 cut(s)	210, 456, 782, 1149, 1175
Alw26I	GTCTC	2 cut(s)	1079, 1097
AlwI	GGATC	6 cut(s)	125, 298, 311, 438, 499, 725
AoxI	GGCC	4 cut(s)	171, 278, 938, 1001
ApeKI	GCWGC	5 cut(s)	327, 753, 821, 924, 1172
ApoI	RAATTY	1 cut(s)	592
AspA2I	CCTAGG	1 cut(s)	998
AspLEI	GCGC	2 cut(s)	350, 1172
AspS9I	GGNCC	3 cut(s)	119, 278, 938
AsuHPI	GGTGA	3 cut(s)	182, 440, 497
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	119
AvrII	CCTAGG	1 cut(s)	998
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	845
BauI	CACGAG	1 cut(s)	331
BbvI	GCAGC	5 cut(s)	339, 765, 808, 936, 1184
BccI	CCATC	4 cut(s)	5, 130, 201, 205
BceAI	ACGGC	2 cut(s)	361, 409
BciT130I	CCWGG	3 cut(s)	300, 814, 843
BcoDI	GTCTC	2 cut(s)	1079, 1097
BcuI	ACTAGT	1 cut(s)	1088
BfaI	CTAG	7 cut(s)	156, 372, 542, 612, 897, 999, 1089
BfmI	CTRYAG	4 cut(s)	312, 378, 457, 1011
BfoI	RGCGCY	1 cut(s)	351
BglII	AGATCT	2 cut(s)	374, 893
BisI	GCNGC	5 cut(s)	328, 754, 822, 925, 1173
BlnI	CCTAGG	1 cut(s)	998
BlsI	GCNGC	5 cut(s)	329, 755, 823, 926, 1174
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	3 cut(s)	300, 814, 843
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	119, 278, 938
BmiI	GGNNCC	4 cut(s)	38, 305, 665, 847
BmrFI	CCNGG	3 cut(s)	300, 814, 843
BmsI	GCATC	2 cut(s)	100, 1123
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaJI	CCNNGG	4 cut(s)	229, 299, 425, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	660, 689, 959
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	174, 1004
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	1068
BseBI	CCWGG	3 cut(s)	300, 814, 843
BseDI	CCNNGG	4 cut(s)	229, 299, 425, 998
BseGI	GGATG	5 cut(s)	142, 193, 949, 994, 1059
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	3 cut(s)	660, 689, 959
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	969, 1104
BseNI	ACTGG	2 cut(s)	174, 1004
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	5 cut(s)	339, 765, 808, 936, 1184
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	4 cut(s)	173, 280, 940, 1003
BshNI	GGYRCC	1 cut(s)	845
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	3 cut(s)	660, 689, 959
BsmAI	GTCTC	2 cut(s)	1079, 1097
BsmI	GAATGC	2 cut(s)	21, 224
BsnI	GGCC	4 cut(s)	173, 280, 940, 1003
Bsp119I	TTCGAA	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	4 cut(s)	173, 280, 940, 1003
BspCNI	CTCAG	2 cut(s)	970, 1105
BspHI	TCATGA	2 cut(s)	127, 727
BspLI	GGNNCC	4 cut(s)	38, 305, 665, 847
BspPI	GGATC	6 cut(s)	125, 298, 311, 438, 499, 725
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	174, 1004
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	4 cut(s)	229, 299, 425, 998
BssNAI	GTATAC	1 cut(s)	790
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	2 cut(s)	229, 998
Bst1107I	GTATAC	1 cut(s)	790
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	3 cut(s)	300, 814, 843
Bst4CI	ACNGT	4 cut(s)	80, 218, 862, 1015
Bst6I	CTCTTC	2 cut(s)	268, 1077
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	784, 1151
BstDEI	CTNAG	2 cut(s)	978, 1113
BstDSI	CCRYGG	2 cut(s)	229, 425
BstF5I	GGATG	5 cut(s)	142, 193, 949, 994, 1059
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	350, 1172
BstMAI	GTCTC	2 cut(s)	1079, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 333
BstNI	CCWGG	3 cut(s)	300, 814, 843
BstNSI	RCATGY	2 cut(s)	424, 1160
BstSCI	CCNGG	3 cut(s)	298, 812, 841
BstSFI	CTRYAG	4 cut(s)	312, 378, 457, 1011
BstV1I	GCAGC	5 cut(s)	339, 765, 808, 936, 1184
BstX2I	RGATCY	4 cut(s)	303, 374, 491, 893
BstYI	RGATCY	4 cut(s)	303, 374, 491, 893
BstZ17I	GTATAC	1 cut(s)	790
BsuRI	GGCC	4 cut(s)	173, 280, 940, 1003
BtgI	CCRYGG	2 cut(s)	229, 425
BtsCI	GGATG	5 cut(s)	142, 193, 949, 994, 1059
BtsIMutI	CAGTG	3 cut(s)	85, 181, 1011
Cac8I	GCNNGC	2 cut(s)	784, 1151
CciI	TCATGA	2 cut(s)	127, 727
CfoI	GCGC	2 cut(s)	350, 1172
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	119, 278, 938
Csp6I	GTAC	2 cut(s)	159, 615
CviQI	GTAC	2 cut(s)	159, 615
DdeI	CTNAG	2 cut(s)	978, 1113
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	268, 1077
EarI	CTCTTC	2 cut(s)	268, 1077
Eco130I	CCWWGG	2 cut(s)	229, 998
Eco32I	GATATC	1 cut(s)	1070
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	3 cut(s)	690, 892, 1101
EcoRII	CCWGG	3 cut(s)	298, 812, 841
EcoRV	GATATC	1 cut(s)	1070
EcoT14I	CCWWGG	2 cut(s)	229, 998
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	229, 998
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	328, 754, 822, 925, 1173
FokI	GGATG	5 cut(s)	129, 180, 936, 981, 1066
Fsp4HI	GCNGC	5 cut(s)	328, 754, 822, 925, 1173
FspBI	CTAG	7 cut(s)	156, 372, 542, 612, 897, 999, 1089
GlaI	GCGC	2 cut(s)	349, 1171
GluI	GCNGC	5 cut(s)	328, 754, 822, 925, 1173
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	173, 280, 940, 1003
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	2 cut(s)	350, 1172
Hin6I	GCGC	2 cut(s)	348, 1170
HinP1I	GCGC	2 cut(s)	348, 1170
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	445, 533
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	3 cut(s)	182, 440, 497
Hpy166II	GTNNAC	3 cut(s)	403, 604, 790
Hpy188I	TCNGA	7 cut(s)	364, 520, 636, 709, 979, 1081, 1114
Hpy188III	TCNNGA	4 cut(s)	128, 372, 728, 953
Hpy8I	GTNNAC	3 cut(s)	403, 604, 790
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	6 cut(s)	36, 318, 687, 714, 916, 953
HpyCH4III	ACNGT	4 cut(s)	80, 218, 862, 1015
HpyCH4V	TGCA	4 cut(s)	19, 590, 967, 1136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 333
HpyF3I	CTNAG	2 cut(s)	978, 1113
HspAI	GCGC	2 cut(s)	348, 1170
LmnI	GCTCC	1 cut(s)	1180
Lsp1109I	GCAGC	5 cut(s)	339, 765, 808, 936, 1184
LweI	GCATC	2 cut(s)	100, 1123
MaeI	CTAG	7 cut(s)	156, 372, 542, 612, 897, 999, 1089
MaeIII	GTNAC	4 cut(s)	878, 943, 983, 1025
MboII	GAAGA	4 cut(s)	192, 285, 909, 1094
MflI	RGATCY	4 cut(s)	303, 374, 491, 893
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	3 cut(s)	31, 383, 592
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	561, 833
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	440, 954
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	3 cut(s)	300, 814, 843
Mva1269I	GAATGC	2 cut(s)	21, 224
MvaI	CCWGG	3 cut(s)	300, 814, 843
MwoI	GCNNNNNNNGC	2 cut(s)	286, 333
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	55
NlaIV	GGNNCC	4 cut(s)	38, 305, 665, 847
NmuCI	GTSAC	1 cut(s)	943
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	424, 1160
NspV	TTCGAA	1 cut(s)	29
PagI	TCATGA	2 cut(s)	127, 727
PciI	ACATGT	1 cut(s)	1156
PctI	GAATGC	2 cut(s)	21, 224
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	329, 755, 823, 926, 1174
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	1156
Psp6I	CCWGG	3 cut(s)	298, 812, 841
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	298, 812, 841
PspN4I	GGNNCC	4 cut(s)	38, 305, 665, 847
PspPI	GGNCC	3 cut(s)	119, 278, 938
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PsuI	RGATCY	4 cut(s)	303, 374, 491, 893
RsaI	GTAC	2 cut(s)	160, 616
RsaNI	GTAC	2 cut(s)	159, 615
RseI	CAYNNNNRTG	2 cut(s)	440, 954
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	5 cut(s)	328, 754, 822, 925, 1173
Sau96I	GGNCC	3 cut(s)	119, 278, 938
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	3 cut(s)	300, 814, 843
SfaNI	GCATC	2 cut(s)	100, 1123
SfcI	CTRYAG	4 cut(s)	312, 378, 457, 1011
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	440, 954
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SpeI	ACTAGT	1 cut(s)	1088
Sse9I	AATT	3 cut(s)	31, 383, 592
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	7 cut(s)	156, 372, 542, 612, 897, 999, 1089
StyD4I	CCNGG	3 cut(s)	298, 812, 841
StyI	CCWWGG	2 cut(s)	229, 998
TaaI	ACNGT	4 cut(s)	80, 218, 862, 1015
TaqI	TCGA	5 cut(s)	29, 220, 560, 1072, 1183
TasI	AATT	3 cut(s)	31, 383, 592
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	3 cut(s)	85, 181, 1011
TseFI	GTSAC	1 cut(s)	943
TseI	GCWGC	5 cut(s)	327, 753, 821, 924, 1172
Tsp45I	GTSAC	1 cut(s)	943
TspDTI	ATGAA	3 cut(s)	793, 972, 1098
TspRI	CASTG	3 cut(s)	85, 181, 1011
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	592
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	2 cut(s)	424, 1160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmaJI	CCTAGG	1 cut(s)	998
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	7 cut(s)	156, 372, 542, 612, 897, 999, 1089
ZrmI	AGTACT	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.