Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002650

Physical Location & Seq

Genomic Coordinates Reverse (-)

9751740 .. 9758279

Gene Structure 6540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGGGCATAGACATCCGTTCAGCACATCTCAAATTTTTGAGAGTGAAAATGATCCGAATTGGAACCATATGAACACCGAACACCCATTTGGACATCTGGCTAGGACTGGGGCAGGAGAGAACGGTTCTTTGTTTTATCCAGTGGAAAATATGTTTACCGATGGAATGCACTTTCCTTCAAATTGGAACCCACCTATGAGGTCATATGGGTATTCTTCCTTGAGCCACAATGTTGATATGCCTCCTCAATATCAACAGGATGCTTCTGGTCCATCTCATGATCCTTTTCAACATCAACCAAGTGCTGGTACTTTTGGTATGGCCAATGGAAACTATGCTCACCATCCGTCCTCGTCCAGTTATGACCGTCGAGCAGTCCATGGTGTTGAGGGTGGTTTTGTTGATCTCACAATGAGCAACGGAAGAGGGTTGCACAAGCGAAAAAGTCCTGGGATCCCTTCTGTAGCAGAGAGAGGCAGCACAAGCAGATACTATGGTGCTGGAAGTTCCTCTGATGTCTCTAGATCTGCAGAATTACAGCAGGACAAAGTAAACATGGATACCCCACACATGCCATGGGATCACATGACTATGATCCACCCCAGTTATAGAGGAAACGACCCCTCAAGTAGAGGTGAGGGATCTATGAGAAATGTGAGAAGCCGCTCAGAACATGATTTGGAGTCCAACCTAGCAAGGACACATCTATCGAACAATCCTATACATAGTTCTTATTCTGCTAATTTCCCTATTGATAACCTTGATCTTTCAAGTCAGAGTTCCAATGTTTTGGCCCATGAATGGAACCATATTAGCATATCGCCTCCTCATGGAAGGATTTTACCTTCAGATACAGGTGGTTTCAGTCATGATCCCAACCACTTTCTTGTAGGCAGCGGTATAATTAATGGTTCTTCCGAAGCTGGTGTATACCATCATGATTTTATTCCAACCAGAGGTGCTGCTGTTCCTCCAAGTTATCCTGGTGCTTTACCCCATCCTGTAAGGGGAGTTCGCAGTAACTATTCTCAAAGATCTAACCCAACCTTGAGGGGTTCTTCAAGCAGCATGAGGTTTGGGCCTGGGACACATTCAGATGAAGGATTGCATCTGGTATCTGAGAGTTACCCAAGACATCATAGGCCAGTGCCTCCAGTTGGGTGGCGTAACAGTGACAGGAATGGTAGATCAAGGATGTCTAATGATAGATATCGAGTCTCTGACGAGACTAGTCTCCATGATCGGTTTTCATCTGAGGGCTTTATGATTGCTGATCGGCCAGCCTTTTATGGTTCCAGGAGTATGCTCGATCATCATAGAGACTTGAGACTAGACATAGACAACATGAGTTATGAGGAACTACTTGCATTGGGGGAAAGGATTGGGCATGTCAACACAGGTGTATCTGAAGATCTAATACCAAAGTGTTTGACAGAAACGATATATTGTTCTTCAGACCTAAACCAGGAGGAAGGCACATGCGTAATCTGTCTGGAAGAGTACGAGGACAGGGACGATGTTGCGGCACTGAAAACTTGCGGGCATGATTACCATGTGACTTGCATCAAAAAGTGGCTGTCAATGAAAAATTGTTGTCCAATCTGCAAATGTTCTGCTCTCATTGATAATACAAAGGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

548

Amino Acids

60.78

Weight (kDa)

6.27

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	483 - 536	5.8e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	493 - 536	1.8e-12	Ring finger domain
zf-C3HC4	PF00097	494 - 535	2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	494 - 535	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	494 - 522	2.4e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150 AT2G37150
fragaria_vesca	FvH4_6g15650 FvH4_6g15650 FvH4_6g15650 FvH4_6g15650
malus_domestica	MD04G1100800.v1.1 MD12G1120500.v1.1
prunus_persica	Prupe.6G238800_v2.0.a1
pyrus_communis	pycom04g09560 pycom12g11950
rosa_chinensis	RchiOBHm_Chr3g0469341
rosa_laevigata	RLG00000024358
rosa_multiflora	Rmu_ssc0000394.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411970
rosa_rugosa	Rorug03G0100500 Rorug03G0100600 Rorug03G0100600 Rorug03G0100700 Rorug03G0100700 Rorug03G0100800 Rorug03G0100800
rosa_samantha	Rh3AG150000 Rh3BG173600 Rh3CG164600 Rh3DG201900
rosa_wichuraiana	Rw3G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	930
AciI	CCGC	4 cut(s)	664, 897, 1523, 1539
AclWI	GGATC	8 cut(s)	47, 275, 448, 461, 588, 589, 649, 866
AcoI	YGGCCR	2 cut(s)	321, 1277
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	3 cut(s)	831, 1428, 1437
AfaI	GTAC	2 cut(s)	310, 1502
AfiI	CCNNNNNNNGG	7 cut(s)	305, 801, 830, 956, 1007, 1157, 1465
AgsI	TTSAA	4 cut(s)	180, 290, 771, 1062
AhlI	ACTAGT	1 cut(s)	1229
AjnI	CCWGG	5 cut(s)	448, 982, 1081, 1295, 1464
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	1 cut(s)	923
AluI	AGCT	1 cut(s)	923
Alw26I	GTCTC	6 cut(s)	523, 1220, 1222, 1238, 1314, 1321
AlwI	GGATC	8 cut(s)	47, 275, 448, 461, 588, 589, 649, 866
AoxI	GGCC	5 cut(s)	321, 792, 1079, 1142, 1277
ApeKI	GCWGC	4 cut(s)	477, 894, 962, 1065
ApoI	RAATTY	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	906
AspS9I	GGNCC	3 cut(s)	269, 793, 1079
AsuHPI	GGTGA	2 cut(s)	332, 647
AvaII	GGWCC	1 cut(s)	269
BaeI	ACNNNNGTAYC	4 cut(s)	481, 514, 1386, 1419
BalI	TGGCCA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	453
BarI	GAAGNNNNNNTAC	2 cut(s)	1401, 1433
BbvI	GCAGC	4 cut(s)	489, 906, 949, 1077
BccI	CCATC	5 cut(s)	155, 280, 351, 942, 1005
BciT130I	CCWGG	5 cut(s)	450, 984, 1083, 1297, 1466
BciVI	GTATCC	1 cut(s)	553
BcoDI	GTCTC	6 cut(s)	523, 1220, 1222, 1238, 1314, 1321
BcuI	ACTAGT	1 cut(s)	1229
BfaI	CTAG	5 cut(s)	102, 522, 692, 1230, 1331
BfmI	CTRYAG	2 cut(s)	462, 528
BfuI	GTATCC	1 cut(s)	553
BglII	AGATCT	3 cut(s)	524, 1034, 1411
BisI	GCNGC	6 cut(s)	478, 664, 895, 963, 1066, 1524
BlsI	GCNGC	6 cut(s)	479, 665, 896, 964, 1067, 1525
Bme1390I	CCNGG	5 cut(s)	450, 984, 1083, 1297, 1466
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	269, 793, 1079
BmiI	GGNNCC	5 cut(s)	65, 188, 455, 806, 1294
BmrFI	CCNGG	5 cut(s)	450, 984, 1083, 1297, 1466
BmrI	ACTGGG	2 cut(s)	117, 597
BmsI	GCATC	3 cut(s)	250, 1117, 1572
BmuI	ACTGGG	2 cut(s)	117, 597
BpmI	CTGGAG	1 cut(s)	1137
BpuEI	CTTGAG	4 cut(s)	241, 610, 1069, 1345
BsaBI	GATNNNNATC	1 cut(s)	1209
BsaJI	CCNNGG	4 cut(s)	379, 449, 575, 1082
Bsc4I	CCNNNNNNNGG	7 cut(s)	305, 801, 830, 956, 1007, 1157, 1465
Bse1I	ACTGG	6 cut(s)	112, 140, 357, 603, 1145, 1154
Bse8I	GATNNNNATC	1 cut(s)	1209
BseBI	CCWGG	5 cut(s)	450, 984, 1083, 1297, 1466
BseDI	CCNNGG	4 cut(s)	379, 449, 575, 1082
BseGI	GGATG	5 cut(s)	13, 265, 343, 997, 1200
BseJI	GATNNNNATC	1 cut(s)	1209
BseLI	CCNNNNNNNGG	7 cut(s)	305, 801, 830, 956, 1007, 1157, 1465
BseMII	CTCAG	3 cut(s)	681, 1110, 1245
BseNI	ACTGG	6 cut(s)	112, 140, 357, 603, 1145, 1154
BseRI	GAGGAG	2 cut(s)	234, 816
BseXI	GCAGC	4 cut(s)	489, 906, 949, 1077
BshFI	GGCC	5 cut(s)	323, 794, 1081, 1144, 1279
BslFI	GGGAC	2 cut(s)	1099, 1526
BslI	CCNNNNNNNGG	7 cut(s)	305, 801, 830, 956, 1007, 1157, 1465
BsmAI	GTCTC	6 cut(s)	523, 1220, 1222, 1238, 1314, 1321
BsmFI	GGGAC	2 cut(s)	1099, 1526
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	5 cut(s)	323, 794, 1081, 1144, 1279
Bsp19I	CCATGG	2 cut(s)	379, 575
BspACI	CCGC	4 cut(s)	664, 897, 1523, 1539
BspANI	GGCC	5 cut(s)	323, 794, 1081, 1144, 1279
BspCNI	CTCAG	3 cut(s)	680, 1111, 1246
BspHI	TCATGA	3 cut(s)	277, 868, 937
BspLI	GGNNCC	5 cut(s)	65, 188, 455, 806, 1294
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	8 cut(s)	47, 275, 448, 461, 588, 589, 649, 866
BsrBI	CCGCTC	1 cut(s)	666
BsrI	ACTGG	6 cut(s)	112, 140, 357, 603, 1145, 1154
BssECI	CCNNGG	4 cut(s)	379, 449, 575, 1082
BssNAI	GTATAC	1 cut(s)	931
BssT1I	CCWWGG	2 cut(s)	379, 575
Bst1107I	GTATAC	1 cut(s)	931
Bst2UI	CCWGG	5 cut(s)	450, 984, 1083, 1297, 1466
Bst4CI	ACNGT	3 cut(s)	125, 368, 1172
Bst6I	CTCTTC	2 cut(s)	418, 1491
BstC8I	GCNNGC	2 cut(s)	1281, 1541
BstDEI	CTNAG	3 cut(s)	667, 1119, 1254
BstDSI	CCRYGG	2 cut(s)	379, 575
BstENI	CCTNNNNNAGG	1 cut(s)	1463
BstF5I	GGATG	5 cut(s)	13, 265, 343, 997, 1200
BstMAI	GTCTC	6 cut(s)	523, 1220, 1222, 1238, 1314, 1321
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	5 cut(s)	450, 984, 1083, 1297, 1466
BstNSI	RCATGY	3 cut(s)	574, 1391, 1482
BstSCI	CCNGG	5 cut(s)	448, 982, 1081, 1295, 1464
BstSFI	CTRYAG	2 cut(s)	462, 528
BstV1I	GCAGC	4 cut(s)	489, 906, 949, 1077
BstX2I	RGATCY	5 cut(s)	453, 524, 641, 1034, 1411
BstXI	CCANNNNNNTGG	2 cut(s)	790, 1161
BstYI	RGATCY	5 cut(s)	453, 524, 641, 1034, 1411
BstZ17I	GTATAC	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	5 cut(s)	323, 794, 1081, 1144, 1279
BtgI	CCRYGG	2 cut(s)	379, 575
BtsCI	GGATG	5 cut(s)	13, 265, 343, 997, 1200
BtsIMutI	CAGTG	4 cut(s)	147, 1152, 1177, 1526
Cac8I	GCNNGC	2 cut(s)	1281, 1541
CciI	TCATGA	3 cut(s)	277, 868, 937
Cfr13I	GGNCC	3 cut(s)	269, 793, 1079
Csp6I	GTAC	2 cut(s)	309, 1501
CviQI	GTAC	2 cut(s)	309, 1501
DdeI	CTNAG	3 cut(s)	667, 1119, 1254
EaeI	YGGCCR	2 cut(s)	321, 1277
Eam1104I	CTCTTC	2 cut(s)	418, 1491
EarI	CTCTTC	2 cut(s)	418, 1491
Eco130I	CCWWGG	2 cut(s)	379, 575
Eco32I	GATATC	1 cut(s)	1211
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	3 cut(s)	831, 1428, 1437
EcoNI	CCTNNNNNAGG	1 cut(s)	1463
EcoRII	CCWGG	5 cut(s)	448, 982, 1081, 1295, 1464
EcoRV	GATATC	1 cut(s)	1211
EcoT14I	CCWWGG	2 cut(s)	379, 575
ErhI	CCWWGG	2 cut(s)	379, 575
FaqI	GGGAC	2 cut(s)	1099, 1526
FauI	CCCGC	1 cut(s)	1532
FauNDI	CATATG	2 cut(s)	69, 205
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	6 cut(s)	478, 664, 895, 963, 1066, 1524
FokI	GGATG	4 cut(s)	272, 330, 984, 1207
Fsp4HI	GCNGC	6 cut(s)	478, 664, 895, 963, 1066, 1524
FspBI	CTAG	5 cut(s)	102, 522, 692, 1230, 1331
GluI	GCNGC	6 cut(s)	478, 664, 895, 963, 1066, 1524
GsuI	CTGGAG	1 cut(s)	1137
HaeIII	GGCC	5 cut(s)	323, 794, 1081, 1144, 1279
HincII	GTYRAC	1 cut(s)	1393
HindII	GTYRAC	1 cut(s)	1393
HinfI	GANTC	2 cut(s)	683, 1215
HphI	GGTGA	2 cut(s)	332, 647
Hpy166II	GTNNAC	4 cut(s)	156, 553, 931, 1393
Hpy188III	TCNNGA	5 cut(s)	278, 522, 869, 938, 1493
Hpy8I	GTNNAC	4 cut(s)	156, 553, 931, 1393
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	186, 468, 828, 855, 1094, 1466
HpyCH4III	ACNGT	3 cut(s)	125, 368, 1172
HpyCH4V	TGCA	7 cut(s)	169, 433, 530, 1108, 1367, 1563, 1605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	3 cut(s)	667, 1119, 1254
Lsp1109I	GCAGC	4 cut(s)	489, 906, 949, 1077
LweI	GCATC	3 cut(s)	250, 1117, 1572
MaeI	CTAG	5 cut(s)	102, 522, 692, 1230, 1331
MaeIII	GTNAC	5 cut(s)	1019, 1124, 1166, 1172, 1555
MbiI	CCGCTC	1 cut(s)	666
MboII	GAAGA	7 cut(s)	207, 435, 906, 1050, 1421, 1443, 1508
MflI	RGATCY	5 cut(s)	453, 524, 641, 1034, 1411
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	7 cut(s)	33, 58, 181, 533, 742, 903, 1588
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	692, 1224
MmeI	TCCRAC	2 cut(s)	711, 974
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	2 cut(s)	590, 1095
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	897
MspR9I	CCNGG	5 cut(s)	450, 984, 1083, 1297, 1466
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	5 cut(s)	450, 984, 1083, 1297, 1466
MwoI	GCNNNNNNNGC	1 cut(s)	483
NcoI	CCATGG	2 cut(s)	379, 575
NdeI	CATATG	2 cut(s)	69, 205
NlaIV	GGNNCC	5 cut(s)	65, 188, 455, 806, 1294
NmuCI	GTSAC	2 cut(s)	1172, 1555
NspI	RCATGY	3 cut(s)	574, 1391, 1482
PagI	TCATGA	3 cut(s)	277, 868, 937
PctI	GAATGC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	1295
PkrI	GCNGC	6 cut(s)	479, 665, 896, 964, 1067, 1525
PleI	GAGTC	2 cut(s)	691, 1223
PpsI	GAGTC	2 cut(s)	691, 1223
PshBI	ATTAAT	1 cut(s)	906
Psp6I	CCWGG	5 cut(s)	448, 982, 1081, 1295, 1464
PspGI	CCWGG	5 cut(s)	448, 982, 1081, 1295, 1464
PspN4I	GGNNCC	5 cut(s)	65, 188, 455, 806, 1294
PspPI	GGNCC	3 cut(s)	269, 793, 1079
PsrI	GAACNNNNNNTAC	2 cut(s)	996, 1028
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	5 cut(s)	453, 524, 641, 1034, 1411
RsaI	GTAC	2 cut(s)	310, 1502
RsaNI	GTAC	2 cut(s)	309, 1501
RseI	CAYNNNNRTG	2 cut(s)	590, 1095
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	6 cut(s)	478, 664, 895, 963, 1066, 1524
Sau96I	GGNCC	3 cut(s)	269, 793, 1079
SchI	GAGTC	2 cut(s)	692, 1224
ScrFI	CCNGG	5 cut(s)	450, 984, 1083, 1297, 1466
SfaNI	GCATC	3 cut(s)	250, 1117, 1572
SfcI	CTRYAG	2 cut(s)	462, 528
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	590, 1095
SmlI	CTYRAG	4 cut(s)	220, 625, 1048, 1324
SmoI	CTYRAG	4 cut(s)	220, 625, 1048, 1324
SpeI	ACTAGT	1 cut(s)	1229
Sse9I	AATT	7 cut(s)	33, 58, 181, 533, 742, 903, 1588
SsiI	CCGC	4 cut(s)	664, 897, 1523, 1539
SspMI	CTAG	5 cut(s)	102, 522, 692, 1230, 1331
StyD4I	CCNGG	5 cut(s)	448, 982, 1081, 1295, 1464
StyI	CCWWGG	2 cut(s)	379, 575
TaaI	ACNGT	3 cut(s)	125, 368, 1172
TaqI	TCGA	4 cut(s)	370, 710, 1213, 1308
TasI	AATT	7 cut(s)	33, 58, 181, 533, 742, 903, 1588
TauI	GCSGC	2 cut(s)	666, 1526
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	4 cut(s)	147, 1152, 1177, 1533
TseFI	GTSAC	2 cut(s)	1172, 1555
TseI	GCWGC	4 cut(s)	477, 894, 962, 1065
Tsp45I	GTSAC	2 cut(s)	1172, 1555
TspDTI	ATGAA	5 cut(s)	86, 813, 1113, 1239, 1598
TspGWI	ACGGA	3 cut(s)	6, 336, 435
TspRI	CASTG	4 cut(s)	147, 1152, 1177, 1533
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	906
XagI	CCTNNNNNAGG	1 cut(s)	1463
XapI	RAATTY	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	3 cut(s)	574, 1391, 1482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	930
XspI	CTAG	5 cut(s)	102, 522, 692, 1230, 1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.