RLG00000002788

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019258
Physical Location & Seq
Reverse (-)
39778579 .. 39780713
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002788

Sequence Viewer

Length: 849 bp
ATGGAGCATTTGATGCTATTGGAGCTAGTGCTTGTCCCAATAAGTCAGGGGTCGGCTGATGTTAATGCTTTGAATAGCACAGATGAGGACTGCCCCGCAATGGGTCACATAGCGGAGGATTGTAATGAATACATGAAAGGTGTTAATTCCATTGTTATTCAACACGCTTTTTGTGAAGCAAATCGTCTGGGCCACCACTTGGTTCACCTTAAAAAGCGTTTGCCAGAGTTCCGAAAATTCCCAAAATCAGTTGAAAGAGAAGATCAGTACCTTCAACACGCTGCATCTGCAAATGAAGATCAAGGGCAGGCCTTCCTTTCCGCCTCCCTCACCGGATGCTCTCTACTTTCACCCGATTCGTTTGGCGGTGGCAGTATCGATGGTGCTCGACCTCTAACTGTTTGGGCTGGCGACAACCATGGCTGCGATGATGGTGGCGACTGGCTTTCCTCATCTAGAGTGCCTCCTAACTCTGAGCTCAATGCGAATTCAAAGGTGGCTGGTCTCGATGATTTGACGCATGAGCGGGTGGAATCGAAATTTGGGGAGGCAGAAGAGGGAGCACCGCACCGCTATGGTCTGGTGGGCAGATGTGGGAAGAGCTTGGCTGCGGTTGAGCAAAGCGAGCTATATGGAGGAGATGGATGTCCAGTGGACATCGGTGGTCCAACGAAGGCGCATCTGGGTGACCTACGATGGGTGAAAGTGGATGACGACGTCATCATCATGGTGGAGTTCAGCAGAGAAGCTCATTTTGAGCCTTTGTTGGGCCTCTGTCTGGGTCGGGTATCTTGGCTTGAATGGGCTTCTTGGGCCTCTTGCAGTGTGGAAGATGAATTTTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

30.67

Weight (kDa)

4.74

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02561
rosa_chinensis RchiOBHm_Chr3g0469351
rosa_laevigata RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa Rorug03G0100800
rosa_samantha Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 720
AccB7I CCANNNNNTGG 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 526
AciI CCGC 8 cut(s) 96, 113, 321, 366, 526, 566, 571, 611
AcsI RAATTY 4 cut(s) 236, 487, 539, 836
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 6 cut(s) 100, 101, 199, 697, 767, 778
AgsI TTSAA 6 cut(s) 73, 161, 254, 275, 492, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 5 cut(s) 25, 478, 603, 628, 749
AluI AGCT 5 cut(s) 25, 478, 603, 628, 749
Alw21I GWGCWC 3 cut(s) 388, 480, 565
Alw26I GTCTC 1 cut(s) 509
AoxI GGCC 5 cut(s) 190, 309, 769, 813, 843
ApeKI GCWGC 3 cut(s) 281, 423, 608
ApoI RAATTY 4 cut(s) 236, 487, 539, 836
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 5 cut(s) 190, 665, 769, 813, 843
AsuHPI GGTGA 5 cut(s) 197, 322, 342, 698, 712
AvaII GGWCC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 3 cut(s) 388, 480, 565
BbvI GCAGC 3 cut(s) 268, 410, 595
BccI CCATC 4 cut(s) 374, 425, 635, 690
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 3 cut(s) 26, 456, 847
BisI GCNGC 3 cut(s) 282, 424, 609
BlsI GCNGC 3 cut(s) 283, 425, 610
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 5 cut(s) 190, 665, 769, 813, 843
BmsI GCATC 4 cut(s) 3, 293, 326, 688
Bsa29I ATCGAT 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 717
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 101, 199, 697, 767, 778
Bse1I ACTGG 2 cut(s) 446, 650
Bse3DI GCAATG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 3 cut(s) 341, 650, 715
BseLI CCNNNNNNNGG 6 cut(s) 100, 101, 199, 697, 767, 778
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 446, 650
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 268, 410, 595
BshFI GGCC 5 cut(s) 192, 311, 771, 815, 845
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 3 cut(s) 388, 480, 565
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 6 cut(s) 100, 101, 199, 697, 767, 778
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 5 cut(s) 192, 311, 771, 815, 845
Bso31I GGTCTC 1 cut(s) 509
Bsp1286I GDGCHC 3 cut(s) 388, 480, 565
Bsp143I GATC 2 cut(s) 262, 298
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 8 cut(s) 96, 113, 321, 366, 526, 566, 571, 611
BspANI GGCC 5 cut(s) 192, 311, 771, 815, 845
BspCNI CTCAG 1 cut(s) 466
BspDI ATCGAT 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 2 cut(s) 446, 650
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 2 cut(s) 262, 298
BssNI GRCGYC 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 2 cut(s) 549, 593
BstACI GRCGYC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 309, 409, 626
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 686
BstF5I GGATG 3 cut(s) 341, 650, 715
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 2 cut(s) 265, 301
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 2 cut(s) 262, 298
BstMWI GCNNNNNNNGC 5 cut(s) 13, 22, 287, 625, 812
BstPI GGTNACC 1 cut(s) 686
BstV1I GCAGC 3 cut(s) 268, 410, 595
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 5 cut(s) 192, 311, 771, 815, 845
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 3 cut(s) 341, 650, 715
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 2 cut(s) 657, 829
Cac8I GCNNGC 3 cut(s) 309, 409, 626
CfoI GCGC 1 cut(s) 679
Cfr13I GGNCC 5 cut(s) 190, 665, 769, 813, 843
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 268
CviAII CATG 4 cut(s) 133, 419, 521, 727
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 474
DpnI GATC 2 cut(s) 264, 300
DpnII GATC 2 cut(s) 262, 298
Eam1104I CTCTTC 2 cut(s) 549, 593
EarI CTCTTC 2 cut(s) 549, 593
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 665
Eco53kI GAGCTC 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 4 cut(s) 136, 422, 524, 730
FaiI YATR 8 cut(s) 110, 134, 420, 522, 576, 631, 633, 728
FaqI GGGAC 1 cut(s) 20
FatI CATG 4 cut(s) 132, 418, 520, 726
FauI CCCGC 2 cut(s) 103, 519
Fnu4HI GCNGC 3 cut(s) 282, 424, 609
FokI GGATG 3 cut(s) 348, 657, 722
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 3 cut(s) 282, 424, 609
FspBI CTAG 3 cut(s) 26, 456, 847
GlaI GCGC 1 cut(s) 678
GluI GCNGC 3 cut(s) 282, 424, 609
HaeIII GGCC 5 cut(s) 192, 311, 771, 815, 845
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 526
HhaI GCGC 1 cut(s) 679
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 4 cut(s) 136, 422, 524, 730
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HinfI GANTC 2 cut(s) 356, 533
HpaII CCGG 1 cut(s) 333
HphI GGTGA 5 cut(s) 197, 322, 342, 698, 712
Hpy166II GTNNAC 2 cut(s) 205, 655
Hpy188I TCNGA 2 cut(s) 233, 475
Hpy188III TCNNGA 2 cut(s) 456, 506
Hpy8I GTNNAC 2 cut(s) 205, 655
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 3 cut(s) 281, 322, 667
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 3 cut(s) 284, 290, 822
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 22, 287, 625, 812
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 1 cut(s) 717
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 4 cut(s) 136, 422, 524, 730
HspAI GCGC 1 cut(s) 677
Kzo9I GATC 2 cut(s) 262, 298
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 3 cut(s) 4, 22, 560
Lsp1109I GCAGC 3 cut(s) 268, 410, 595
LweI GCATC 4 cut(s) 3, 293, 326, 688
MaeI CTAG 3 cut(s) 26, 456, 847
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 2 cut(s) 104, 686
MalI GATC 2 cut(s) 264, 300
MbiI CCGCTC 1 cut(s) 526
MboI GATC 2 cut(s) 262, 298
MboII GAAGA 5 cut(s) 272, 308, 566, 610, 842
MhlI GDGCHC 3 cut(s) 388, 480, 565
MluCI AATT 5 cut(s) 145, 236, 487, 539, 836
MmeI TCCRAC 1 cut(s) 692
MseI TTAA 3 cut(s) 63, 144, 210
MslI CAYNNNNRTG 4 cut(s) 573, 684, 725, 728
MspI CCGG 1 cut(s) 333
MwoI GCNNNNNNNGC 5 cut(s) 13, 22, 287, 625, 812
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 262, 298
NlaIII CATG 4 cut(s) 136, 422, 524, 730
NmuCI GTSAC 2 cut(s) 104, 686
PceI AGGCCT 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 356, 533
PflFI GACNNNGTC 1 cut(s) 716
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 3 cut(s) 283, 425, 610
Psp124BI GAGCTC 1 cut(s) 480
PspEI GGTNACC 1 cut(s) 686
PspPI GGNCC 5 cut(s) 190, 665, 769, 813, 843
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 4 cut(s) 573, 684, 725, 728
SacI GAGCTC 1 cut(s) 480
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 3 cut(s) 63, 144, 210
SatI GCNGC 3 cut(s) 282, 424, 609
Sau3AI GATC 2 cut(s) 262, 298
Sau96I GGNCC 5 cut(s) 190, 665, 769, 813, 843
SduI GDGCHC 3 cut(s) 388, 480, 565
SfaNI GCATC 4 cut(s) 3, 293, 326, 688
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 4 cut(s) 573, 684, 725, 728
Sse9I AATT 5 cut(s) 145, 236, 487, 539, 836
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 8 cut(s) 96, 113, 321, 366, 526, 566, 571, 611
SspMI CTAG 3 cut(s) 26, 456, 847
SstI GAGCTC 1 cut(s) 480
StuI AGGCCT 1 cut(s) 311
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 720
TaqI TCGA 4 cut(s) 378, 388, 507, 536
TasI AATT 5 cut(s) 145, 236, 487, 539, 836
TfiI GAWTC 2 cut(s) 356, 533
Tru1I TTAA 3 cut(s) 63, 144, 210
Tru9I TTAA 3 cut(s) 63, 144, 210
TscAI CASTG 2 cut(s) 657, 829
TseFI GTSAC 2 cut(s) 104, 686
TseI GCWGC 3 cut(s) 281, 423, 608
Tsp45I GTSAC 2 cut(s) 104, 686
TspDTI ATGAA 4 cut(s) 141, 149, 309, 849
TspRI CASTG 2 cut(s) 657, 829
Tth111I GACNNNGTC 1 cut(s) 716
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 665
XapI RAATTY 4 cut(s) 236, 487, 539, 836
XbaI TCTAGA 1 cut(s) 455
XspI CTAG 3 cut(s) 26, 456, 847
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.