Rh3DG201800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019258
Physical Location & Seq
Reverse (-)
18324549 .. 18324941
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG201800.1

Sequence Viewer

Length: 393 bp
ATGTCCGACGTCGCTGTTCCTACACCAATGTCATTTAAAGAGCAACACTCGGTGATTGACCCGGCGGCCGAGGATGAGGATATTGTAGTTGTCAAGCTCTACCTTGAGAACAAATACAAGACACGAGTCATGGGTTGGCAAGCCAAATCCGAGTTCACGTGTCACTTGAGAGTAGTTCCTTCGATAAATGGACTGAAATTGGCTTCTAGTTCTGAGACTGCACAACCGTGCAACGACATAGATCATCGTCTTTCTTTCCCTAAACCTTTGAAGGTCTATTTCTTTTTCTTGATTTTCTATCTGATTCCAATTTCAAAAGAATGTCGTTTGAAGTTTTATTTGAAGGTTGCATTTTTGACGGCTTCAATGATATGGTTATTGCGTATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.04

Weight (kDa)

8.77

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02561
rosa_chinensis RchiOBHm_Chr3g0469351
rosa_laevigata RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa Rorug03G0100800
rosa_samantha Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AciI CCGC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 66
AcvI CACGTG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 5 cut(s) 271, 315, 331, 343, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AleI CACNNNNGTG 1 cut(s) 226
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 64
BauI CACGAG 1 cut(s) 123
BbrPI CACGTG 1 cut(s) 159
BceAI ACGGC 1 cut(s) 375
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BoxI GACNNNNGTC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 2 cut(s) 125, 187
BpuMI CCSGG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 204
BseX3I CGGCCG 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 69
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 141
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 68, 97, 143, 203, 362
CviKI_1 RGCY 5 cut(s) 68, 97, 143, 203, 362
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraI TTTAAA 1 cut(s) 37
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 66
Eco72I CACGTG 1 cut(s) 159
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 131, 239, 373, 386
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 1 cut(s) 133
HinfI GANTC 2 cut(s) 126, 304
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 4 cut(s) 7, 151, 214, 303
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 2 cut(s) 11, 14
HpyAV CCTTC 3 cut(s) 189, 265, 337
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 2 cut(s) 9, 158
HpyCH4V TGCA 3 cut(s) 221, 231, 350
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 9, 158
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 1 cut(s) 75
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 9, 158
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MluCI AATT 2 cut(s) 197, 309
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 2 cut(s) 64, 70
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 226
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 134
PmaCI CACGTG 1 cut(s) 159
PmlI CACGTG 1 cut(s) 159
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 125
PspCI CACGTG 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 62
SetI ASST 7 cut(s) 12, 99, 105, 161, 268, 276, 348
SmiMI CAYNNNNRTG 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 104, 166
SmoI CTYRAG 2 cut(s) 104, 166
Sse9I AATT 2 cut(s) 197, 309
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 2 cut(s) 12, 161
TaqI TCGA 1 cut(s) 182
TasI AATT 2 cut(s) 197, 309
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
XspI CTAG 1 cut(s) 207
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.