RLG00000020606

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019258
Physical Location & Seq
Forward (+)
66692587 .. 66693541
955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020606

Sequence Viewer

Length: 693 bp
ATGGTAATGGAGATAATATTTGCTAGTGGTAGTAGCAATGATGCTCGAGCTCTGACTGTTTGGGTTGGCAAAAACCATGGCAGCGATGATGAGTTGTTCCATGGCGGTGACTGGATTTCCTCATCTAGAGTGCCTCCTAACTTTGGGCTCAATGAGAATTCAAAGGTGGCTGTCCTCGATGATTTGACGCCTGAGCAGCTGGAATTAGAATTTGGAGAGGCAGAGGAAGGCGCACTTCTATGGTCCGGTGGCGCAAATATGGGAAAAGCTTGGCTGCTGTTGAGCACGGCGAGTGATATGGAGGAGATGGATGTCCAGTGGACATCAGTGGTCCGACGAAGGCTGCATCGGGGTGCCCTGCGATGGGTGCCCAGATCAATTGGGATGGTTGTGCATTTGGGTTGTGATCGGACCCTAGTTCTAATCTGGTTCTGGGGGACGTCGATGGCAGGAATTCCTTCATTATGGTGGCTGTCTGATCGGCGAAAGTGGATGATGGCGCCGTCGTCATGGAGGAGTTCAGCAGAGAAGCTCATTTTGGACCTTTGTTGGGCCTCTATCTGGGTCGGGTGTCTTGGCCCTGATGGGCTTCTTGGGCCTCGAATTGAGCTTGGAGCATGGAAGATAAATTTTGGGCCTGGTTCTTTTGGGTTCAGAATGACTGTTGGGTTTTTATACCCACCTTATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.65

Weight (kDa)

5.4

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02561
rosa_chinensis RchiOBHm_Chr3g0469351
rosa_laevigata RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa Rorug03G0100800
rosa_samantha Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 443
AccB1I GGYRCC 3 cut(s) 353, 367, 499
AciI CCGC 1 cut(s) 105
AcsI RAATTY 4 cut(s) 157, 209, 453, 628
AcyI GRCGYC 3 cut(s) 188, 440, 500
AfiI CCNNNNNNNGG 5 cut(s) 143, 363, 364, 550, 561
AgsI TTSAA 1 cut(s) 162
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 4 cut(s) 195, 227, 521, 553
AluBI AGCT 5 cut(s) 50, 199, 269, 532, 610
AluI AGCT 5 cut(s) 50, 199, 269, 532, 610
Alw21I GWGCWC 2 cut(s) 52, 287
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 4 cut(s) 552, 577, 596, 635
ApeKI GCWGC 4 cut(s) 81, 196, 274, 343
ApoI RAATTY 4 cut(s) 157, 209, 453, 628
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 3 cut(s) 233, 254, 502
AspS9I GGNCC 8 cut(s) 243, 331, 411, 541, 552, 578, 596, 635
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 4 cut(s) 243, 331, 411, 541
BaeGI GKGCMC 2 cut(s) 358, 372
BanI GGYRCC 3 cut(s) 353, 367, 499
BanII GRGCYC 2 cut(s) 52, 150
Bbv12I GWGCWC 2 cut(s) 52, 287
BbvI GCAGC 4 cut(s) 93, 208, 261, 330
BccI CCATC 6 cut(s) 301, 357, 379, 439, 490, 578
BceAI ACGGC 2 cut(s) 303, 487
BciT130I CCWGG 1 cut(s) 639
BfaI CTAG 3 cut(s) 24, 126, 416
BfoI RGCGCY 1 cut(s) 503
BisI GCNGC 4 cut(s) 82, 197, 275, 344
BlsI GCNGC 4 cut(s) 83, 198, 276, 345
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 4 cut(s) 243, 331, 411, 541
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 8 cut(s) 243, 331, 411, 541, 552, 578, 596, 635
BmiI GGNNCC 4 cut(s) 355, 369, 413, 501
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 2 cut(s) 31, 355
Bpu10I CCTNAGC 1 cut(s) 192
BsaHI GRCGYC 3 cut(s) 188, 440, 500
BsaJI CCNNGG 2 cut(s) 76, 100
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 363, 364, 550, 561
Bse1I ACTGG 2 cut(s) 116, 316
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 76, 100
BseGI GGATG 3 cut(s) 316, 390, 498
BseLI CCNNNNNNNGG 5 cut(s) 143, 363, 364, 550, 561
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 116, 316
BseRI GAGGAG 2 cut(s) 317, 529
BseSI GKGCMC 2 cut(s) 358, 372
BseXI GCAGC 4 cut(s) 93, 208, 261, 330
BshFI GGCC 4 cut(s) 554, 579, 598, 637
BshNI GGYRCC 3 cut(s) 353, 367, 499
BsiHKAI GWGCWC 2 cut(s) 52, 287
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 5 cut(s) 143, 363, 364, 550, 561
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 4 cut(s) 554, 579, 598, 637
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 5 cut(s) 52, 150, 287, 358, 372
Bsp143I GATC 3 cut(s) 374, 406, 478
Bsp19I CCATGG 2 cut(s) 76, 100
BspACI CCGC 1 cut(s) 105
BspANI GGCC 4 cut(s) 554, 579, 598, 637
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 4 cut(s) 355, 369, 413, 501
BspT107I GGYRCC 3 cut(s) 353, 367, 499
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 2 cut(s) 116, 316
BssECI CCNNGG 2 cut(s) 76, 100
BssMI GATC 3 cut(s) 374, 406, 478
BssNI GRCGYC 3 cut(s) 188, 440, 500
BssT1I CCWWGG 2 cut(s) 76, 100
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 58, 664
BstACI GRCGYC 3 cut(s) 188, 440, 500
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 2 cut(s) 76, 100
BstF5I GGATG 3 cut(s) 316, 390, 498
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 3 cut(s) 233, 254, 502
BstKTI GATC 3 cut(s) 377, 409, 481
BstMBI GATC 3 cut(s) 374, 406, 478
BstMWI GCNNNNNNNGC 3 cut(s) 196, 367, 595
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSLI GKGCMC 2 cut(s) 358, 372
BstV1I GCAGC 4 cut(s) 93, 208, 261, 330
BsuRI GGCC 4 cut(s) 554, 579, 598, 637
BtgI CCRYGG 2 cut(s) 76, 100
BtgZI GCGATG 2 cut(s) 99, 376
BtsCI GGATG 3 cut(s) 316, 390, 498
BtsIMutI CAGTG 2 cut(s) 323, 333
CfoI GCGC 3 cut(s) 233, 254, 502
Cfr13I GGNCC 8 cut(s) 243, 331, 411, 541, 552, 578, 596, 635
CseI GACGC 1 cut(s) 196
CviAII CATG 4 cut(s) 77, 101, 510, 618
DdeI CTNAG 1 cut(s) 192
DinI GGCGCC 1 cut(s) 501
DpnI GATC 3 cut(s) 376, 408, 480
DpnII GATC 3 cut(s) 374, 406, 478
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 76, 100
Eco24I GRGCYC 2 cut(s) 52, 150
Eco47I GGWCC 4 cut(s) 243, 331, 411, 541
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 50
EcoRI GAATTC 2 cut(s) 157, 453
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 76, 100
EcoT38I GRGCYC 2 cut(s) 52, 150
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 76, 100
FaeI CATG 4 cut(s) 80, 104, 513, 621
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 451
FatI CATG 4 cut(s) 76, 100, 509, 617
Fnu4HI GCNGC 4 cut(s) 82, 197, 275, 344
FokI GGATG 3 cut(s) 323, 397, 505
FriOI GRGCYC 2 cut(s) 52, 150
Fsp4HI GCNGC 4 cut(s) 82, 197, 275, 344
FspBI CTAG 3 cut(s) 24, 126, 416
GlaI GCGC 3 cut(s) 232, 253, 501
GluI GCNGC 4 cut(s) 82, 197, 275, 344
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 4 cut(s) 554, 579, 598, 637
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 196
HhaI GCGC 3 cut(s) 233, 254, 502
Hin1I GRCGYC 3 cut(s) 188, 440, 500
Hin1II CATG 4 cut(s) 80, 104, 513, 621
Hin6I GCGC 3 cut(s) 231, 252, 500
HinP1I GCGC 3 cut(s) 231, 252, 500
HindIII AAGCTT 1 cut(s) 267
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 5 cut(s) 54, 335, 411, 478, 656
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 3 cut(s) 339, 445, 508
HpyAV CCTTC 3 cut(s) 221, 333, 468
HpyCH4III ACNGT 2 cut(s) 58, 664
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 2 cut(s) 346, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 367, 595
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 440
Hsp92I GRCGYC 3 cut(s) 188, 440, 500
Hsp92II CATG 4 cut(s) 80, 104, 513, 621
HspAI GCGC 3 cut(s) 231, 252, 500
KasI GGCGCC 1 cut(s) 499
Kzo9I GATC 3 cut(s) 374, 406, 478
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 4 cut(s) 93, 208, 261, 330
LweI GCATC 2 cut(s) 31, 355
MaeI CTAG 3 cut(s) 24, 126, 416
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 376, 408, 480
MboI GATC 3 cut(s) 374, 406, 478
MboII GAAGA 1 cut(s) 634
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 5 cut(s) 52, 150, 287, 358, 372
MluCI AATT 7 cut(s) 157, 203, 209, 378, 453, 603, 628
Mly113I GGCGCC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 9 cut(s) 130, 144, 185, 211, 217, 295, 507, 565, 609
MroXI GAANNNNTTC 1 cut(s) 457
MslI CAYNNNNRTG 4 cut(s) 105, 238, 351, 466
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 3 cut(s) 196, 367, 595
NarI GGCGCC 1 cut(s) 500
NcoI CCATGG 2 cut(s) 76, 100
NdeII GATC 3 cut(s) 374, 406, 478
NlaIII CATG 4 cut(s) 80, 104, 513, 621
NlaIV GGNNCC 4 cut(s) 355, 369, 413, 501
NmuCI GTSAC 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 83, 198, 276, 345
PluTI GGCGCC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 4 cut(s) 355, 369, 413, 501
PspPI GGNCC 8 cut(s) 243, 331, 411, 541, 552, 578, 596, 635
PspXI VCTCGAGB 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 199
RseI CAYNNNNRTG 4 cut(s) 105, 238, 351, 466
SacI GAGCTC 1 cut(s) 52
SatI GCNGC 4 cut(s) 82, 197, 275, 344
Sau3AI GATC 3 cut(s) 374, 406, 478
Sau96I GGNCC 8 cut(s) 243, 331, 411, 541, 552, 578, 596, 635
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 5 cut(s) 52, 150, 287, 358, 372
SetI ASST 9 cut(s) 52, 168, 201, 271, 443, 534, 546, 612, 685
SfaNI GCATC 2 cut(s) 31, 355
SfoI GGCGCC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 45
SinI GGWCC 4 cut(s) 243, 331, 411, 541
SlaI CTCGAG 1 cut(s) 45
SmiMI CAYNNNNRTG 4 cut(s) 105, 238, 351, 466
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 7 cut(s) 157, 203, 209, 378, 453, 603, 628
SsiI CCGC 1 cut(s) 105
SspDI GGCGCC 1 cut(s) 499
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 24, 126, 416
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 76, 100
TaaI ACNGT 2 cut(s) 58, 664
TaiI ACGT 1 cut(s) 443
TaqI TCGA 4 cut(s) 46, 177, 443, 601
TasI AATT 7 cut(s) 157, 203, 209, 378, 453, 603, 628
TscAI CASTG 2 cut(s) 323, 333
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 4 cut(s) 81, 196, 274, 343
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 2 cut(s) 323, 333
VpaK11BI GGWCC 4 cut(s) 243, 331, 411, 541
XapI RAATTY 4 cut(s) 157, 209, 453, 628
XbaI TCTAGA 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 3 cut(s) 24, 126, 416
ZraI GACGTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.