Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019258

Physical Location & Seq

Genomic Coordinates Reverse (-)

35077042 .. 35078659

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCCAATGGCAATGATGATATATTTTGTTTAAAGTGTACATGTGGAATCTTCAGCCTCATCACTATTGTTCTTCTTGGTATCTGCTGTGGCATCCACCACCGCCCCCATATCGTCGAACTCAACATAACTCAGGCCTCGCTGTCTTTTACCAACTTCACCACTATCTTCGCAACCAATGACACCCTCCACTACAATCTCGACCTCAATATCACCCTCCGAAACTCCAACAAGTTCTACAGTGTCCATCACCAGAAGATCGAAGCTCTGACCTATTACAGAAACCAGGGCTATGGATATACCACGCTGAACTTGAACTCTTTTTCCCAAGGGGCTATGTCCGACGCTGTTCCTACACCAATGTCATTTAAAGAGCAACACTCGGTGATTAACCCGGCGGCCGAGGATGAGGATATTGTAGTTGTCAAGCTCTACCTTGAGAACAAATACAAGACTCGAGTCATGGGTTGGCAAGCCAAATCCGAGTTCGCGTGTCACTTGAGAGTAGTTCCTTCGATAAATGGACTGAAATTGGCGGCTAGTTCAGAGACTGCACAACCGTGCAACAACATAGATCATCGTCTTTCTTTCCCTAAACCTTTGAAGGTCTATTTCTTTTTCTTGATTTTCTTTCTGATTCCAATTTCAGAAGAATGTCATTTGAAGTATCATTTGAAGGTTGCACTTTTGACGGCTTCAATGATATGGCTATTGTGTATAATATACTCTCTACTTTCACCCGTTTCATTTGGCGGTGGTAGTAGCGATGGTGCTCGAGTTTTGACTGTTTGGGCTGGCAACAACCATGGCGGCGATGATGAGTTATTCCATGGTGGCGACTGGCTTTCCTCATCTAGAGTGCCTCCTAACTGTGGGCTCGATGAGAATTCAAAGATGGCTGTCTTCGCTGATTTGACGCCTGAGCGGTTGGAATCGGAATTTGGGGAGGCAGGCGCAAATATGGGAAAAGCTTGGCTGCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

329

Amino Acids

36.55

Weight (kDa)

6.1

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019258)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02561
rosa_chinensis	RchiOBHm_Chr3g0469351
rosa_laevigata	RLG00000002788 RLG00000020606 RLG00000024357
rosa_rugosa	Rorug03G0100800
rosa_samantha	Rh3DG201800 Rh6DG062100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	925
AccII	CGCG	1 cut(s)	491
AciI	CCGC	6 cut(s)	103, 398, 536, 753, 810, 925
AcoI	YGGCCR	2 cut(s)	3, 399
AcsI	RAATTY	2 cut(s)	886, 938
AcuI	CTGAAG	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	917
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	6 cut(s)	316, 604, 664, 676, 699, 891
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 924, 956
AleI	CACNNNNGTG	1 cut(s)	559
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	266, 430, 971
AluI	AGCT	3 cut(s)	266, 430, 971
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	2 cut(s)	456, 774
AoxI	GGCC	3 cut(s)	3, 135, 399
ApeKI	GCWGC	1 cut(s)	976
ApoI	RAATTY	2 cut(s)	886, 938
AspLEI	GCGC	1 cut(s)	956
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	5 cut(s)	151, 205, 242, 397, 729
AvaI	CYCGRG	2 cut(s)	456, 774
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	1 cut(s)	963
BccI	CCATC	3 cut(s)	255, 761, 889
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	540, 855
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	4 cut(s)	399, 537, 811, 977
BlsI	GCNGC	4 cut(s)	400, 538, 812, 978
Bme1390I	CCNGG	2 cut(s)	287, 395
BmeT110I	CYCGRG	2 cut(s)	456, 774
BmrFI	CCNGG	2 cut(s)	287, 395
BmsI	GCATC	1 cut(s)	102
BoxI	GACNNNNGTC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	895
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
Bpu10I	CCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	2 cut(s)	458, 520
BpuMI	CCSGG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	917
BsaJI	CCNNGG	5 cut(s)	286, 328, 402, 805, 829
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	845
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	5 cut(s)	286, 328, 402, 805, 829
BseGI	GGATG	2 cut(s)	93, 412
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	146, 912
BseNI	ACTGG	1 cut(s)	845
BseX3I	CGGCCG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	963
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	5, 137, 401
BsiEI	CGRYCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	2 cut(s)	456, 774
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	5, 137, 401
BsoBI	CYCGRG	2 cut(s)	456, 774
Bsp1286I	GDGCHC	2 cut(s)	775, 879
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	258, 574
Bsp19I	CCATGG	2 cut(s)	805, 829
BspACI	CCGC	6 cut(s)	103, 398, 536, 753, 810, 925
BspANI	GGCC	3 cut(s)	5, 137, 401
BspCNI	CTCAG	2 cut(s)	145, 913
BspFNI	CGCG	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	845
BssECI	CCNNGG	5 cut(s)	286, 328, 402, 805, 829
BssMI	GATC	2 cut(s)	258, 574
BssNI	GRCGYC	1 cut(s)	917
BssT1I	CCWWGG	3 cut(s)	328, 805, 829
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	242, 561, 787, 872
BstACI	GRCGYC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	474, 796, 952
BstDEI	CTNAG	2 cut(s)	132, 921
BstDSI	CCRYGG	2 cut(s)	805, 829
BstF5I	GGATG	2 cut(s)	93, 412
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	2 cut(s)	261, 577
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	2 cut(s)	258, 574
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	45
BstPAI	GACNNNNGTC	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	285, 393
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	895
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstZI	CGGCCG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	5, 137, 401
BtgI	CCRYGG	2 cut(s)	805, 829
BtgZI	GCGATG	2 cut(s)	780, 828
BtsCI	GGATG	2 cut(s)	93, 412
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	474, 796, 952
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	956
CseI	GACGC	2 cut(s)	353, 925
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	4 cut(s)	42, 463, 806, 830
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	132, 921
DpnI	GATC	2 cut(s)	260, 576
DpnII	GATC	2 cut(s)	258, 574
DraI	TTTAAA	2 cut(s)	33, 370
DraIII	CACNNNGTG	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	3, 399
EagI	CGGCCG	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	399
Eco130I	CCWWGG	3 cut(s)	328, 805, 829
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	879
Eco52I	CGGCCG	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	456, 774
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	328, 805, 829
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	3 cut(s)	328, 805, 829
FaeI	CATG	4 cut(s)	45, 466, 809, 833
FatI	CATG	4 cut(s)	41, 462, 805, 829
Fnu4HI	GCNGC	4 cut(s)	399, 537, 811, 977
FokI	GGATG	2 cut(s)	80, 419
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	4 cut(s)	399, 537, 811, 977
FspBI	CTAG	2 cut(s)	540, 855
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	4 cut(s)	399, 537, 811, 977
HaeIII	GGCC	3 cut(s)	5, 137, 401
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	2 cut(s)	353, 925
HhaI	GCGC	1 cut(s)	956
Hin1I	GRCGYC	1 cut(s)	917
Hin1II	CATG	4 cut(s)	45, 466, 809, 833
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	5 cut(s)	48, 454, 459, 637, 932
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	5 cut(s)	151, 205, 242, 397, 729
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	8 cut(s)	221, 270, 343, 484, 547, 636, 649, 937
Hpy188III	TCNNGA	3 cut(s)	200, 622, 855
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	2 cut(s)	119, 347
HpyAV	CCTTC	3 cut(s)	522, 598, 670
HpyCH4III	ACNGT	4 cut(s)	242, 561, 787, 872
HpyCH4V	TGCA	3 cut(s)	554, 564, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	2 cut(s)	132, 921
Hsp92I	GRCGYC	1 cut(s)	917
Hsp92II	CATG	4 cut(s)	45, 466, 809, 833
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	2 cut(s)	258, 574
LpnPI	CCDG	9 cut(s)	119, 266, 272, 299, 408, 780, 826, 933, 936
Lsp1109I	GCAGC	1 cut(s)	963
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	540, 855
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	2 cut(s)	260, 576
MbiI	CCGCTC	1 cut(s)	925
MboI	GATC	2 cut(s)	258, 574
MboII	GAAGA	6 cut(s)	43, 65, 160, 268, 662, 895
MhlI	GDGCHC	2 cut(s)	775, 879
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	530, 642, 886, 938
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	448, 468
MmeI	TCCRAC	3 cut(s)	252, 366, 909
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	32, 369, 390, 985
MslI	CAYNNNNRTG	1 cut(s)	559
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	287, 395
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	905
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	2 cut(s)	805, 829
NdeII	GATC	2 cut(s)	258, 574
NlaIII	CATG	4 cut(s)	45, 466, 809, 833
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	559
PaeR7I	CTCGAG	2 cut(s)	456, 774
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	48, 637, 932
PkrI	GCNGC	4 cut(s)	400, 538, 812, 978
PleI	GAGTC	2 cut(s)	448, 467
PpsI	GAGTC	2 cut(s)	448, 467
PscI	ACATGT	1 cut(s)	41
PshAI	GACNNNNGTC	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspXI	VCTCGAGB	2 cut(s)	456, 774
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	559
SaqAI	TTAA	4 cut(s)	32, 369, 390, 985
SatI	GCNGC	4 cut(s)	399, 537, 811, 977
Sau3AI	GATC	2 cut(s)	258, 574
SchI	GAGTC	2 cut(s)	448, 468
ScrFI	CCNGG	2 cut(s)	287, 395
SduI	GDGCHC	2 cut(s)	775, 879
SetI	ASST	9 cut(s)	207, 268, 275, 432, 438, 601, 609, 681, 973
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	2 cut(s)	456, 774
SlaI	CTCGAG	2 cut(s)	456, 774
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	4 cut(s)	437, 456, 499, 774
SmoI	CTYRAG	4 cut(s)	437, 456, 499, 774
Sse9I	AATT	4 cut(s)	530, 642, 886, 938
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	6 cut(s)	103, 398, 536, 753, 810, 925
SspMI	CTAG	2 cut(s)	540, 855
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	285, 393
StyI	CCWWGG	3 cut(s)	328, 805, 829
TaaI	ACNGT	4 cut(s)	242, 561, 787, 872
TaqI	TCGA	7 cut(s)	117, 201, 261, 457, 515, 775, 879
TasI	AATT	4 cut(s)	530, 642, 886, 938
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	3 cut(s)	401, 539, 813
TfiI	GAWTC	3 cut(s)	48, 637, 932
Tru1I	TTAA	4 cut(s)	32, 369, 390, 985
Tru9I	TTAA	4 cut(s)	32, 369, 390, 985
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	976
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	735
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	2 cut(s)	886, 938
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	45
XhoI	CTCGAG	2 cut(s)	456, 774
XspI	CTAG	2 cut(s)	540, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.