FvH4_7g04450

Acyl carrier protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013707
Physical Location & Seq
Reverse (-)
5008585 .. 5009490
906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04450.t1

Sequence Viewer

Length: 456 bp
ATGGCCTCTTTTGTTTCAACTTCCCCAGTCCCTGTGGCCACTCTTTCCTACACTGCCAAGGCCAGGAGCACAGTTTGCCAGATTAATGGCTTCTCTAGCTTTGGAGGTCCAGTGGTTAGAGGACTAAGAATCATGCCAAAGATCAAGATCACCAAGGCAGCAGAAAGATCATTTCCAGTCCCTAGTTGCTTGAAGACCACAATCTCATGTTCAATCGCTCAACCGGAAACTCTCCAAACTGTTCAAAGCACTATTGCCAAGCAACTATCCGTCGATGAAAGCACCGTCACTCCTTCCACCAAGTTCGCCGACTTGGGGGCAGATTCTCTTGACACTGTCGAAATTATGATGGCTTTGGAGGAGAAGTTTGGTGTGTCCATCGGAGAGAGTGGAGCTGAGAATATCGCAACCGTTCAAGATGCTGCTGATCTGATTGAGAAAGTGAAATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP-binding

Protein Analysis

152

Amino Acids

15.85

Weight (kDa)

5.46

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP-binding PF00550 79 - 145 8e-13 Phosphopantetheine attachment site
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 63, 315
AgsI TTSAA 5 cut(s) 18, 193, 213, 245, 416
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 3 cut(s) 99, 395, 452
AluI AGCT 3 cut(s) 99, 395, 452
Alw21I GWGCWC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 3 cut(s) 3, 36, 60
ApeKI GCWGC 2 cut(s) 158, 422
AseI ATTAAT 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 170, 409
BccI CCATC 2 cut(s) 343, 386
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 2 cut(s) 96, 183
BisI GCNGC 2 cut(s) 159, 423
BlsI GCNGC 2 cut(s) 160, 424
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 57, 153
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 6 cut(s) 96, 126, 274, 304, 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 315
Bse1I ACTGG 3 cut(s) 26, 110, 176
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 57, 153
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 63, 315
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 3 cut(s) 26, 110, 176
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 170, 409
BshFI GGCC 3 cut(s) 5, 38, 62
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 2 cut(s) 14, 164
BslI CCNNNNNNNGG 2 cut(s) 63, 315
BsmFI GGGAC 2 cut(s) 14, 164
BsnI GGCC 3 cut(s) 5, 38, 62
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 4 cut(s) 141, 147, 167, 427
BspANI GGCC 3 cut(s) 5, 38, 62
BspCNI CTCAG 1 cut(s) 388
BsrI ACTGG 3 cut(s) 26, 110, 176
BssECI CCNNGG 2 cut(s) 57, 153
BssMI GATC 4 cut(s) 141, 147, 167, 427
BssT1I CCWWGG 2 cut(s) 57, 153
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 5 cut(s) 73, 241, 286, 337, 412
BstAPI GCANNNNNTGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 125, 396
BstKTI GATC 4 cut(s) 144, 150, 170, 430
BstMBI GATC 4 cut(s) 141, 147, 167, 427
BstMWI GCNNNNNNNGC 2 cut(s) 75, 96
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 170, 409
BstV2I GAAGAC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 86
BsuRI GGCC 3 cut(s) 5, 38, 62
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 117, 333
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 2 cut(s) 133, 207
CviJI RGCY 8 cut(s) 5, 38, 62, 90, 99, 353, 395, 452
CviKI_1 RGCY 8 cut(s) 5, 38, 62, 90, 99, 353, 395, 452
DdeI CTNAG 2 cut(s) 125, 396
DpnI GATC 4 cut(s) 143, 149, 169, 429
DpnII GATC 4 cut(s) 141, 147, 167, 427
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 57, 153
Eco47I GGWCC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 57, 153
ErhI CCWWGG 2 cut(s) 57, 153
FaeI CATG 2 cut(s) 136, 210
FaiI YATR 3 cut(s) 134, 208, 347
FaqI GGGAC 2 cut(s) 14, 164
FatI CATG 2 cut(s) 132, 206
Fnu4HI GCNGC 2 cut(s) 159, 423
Fsp4HI GCNGC 2 cut(s) 159, 423
FspBI CTAG 2 cut(s) 96, 183
GluI GCNGC 2 cut(s) 159, 423
HaeIII GGCC 3 cut(s) 5, 38, 62
HapII CCGG 1 cut(s) 224
Hin1II CATG 2 cut(s) 136, 210
HinfI GANTC 2 cut(s) 129, 323
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 383, 432
Hpy188III TCNNGA 3 cut(s) 145, 329, 416
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 5 cut(s) 73, 241, 286, 337, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 96
HpyF3I CTNAG 2 cut(s) 125, 396
Hsp92II CATG 2 cut(s) 136, 210
Kzo9I GATC 4 cut(s) 141, 147, 167, 427
LmnI GCTCC 2 cut(s) 66, 392
LpnPI CCDG 8 cut(s) 39, 45, 49, 76, 92, 123, 189, 237
Lsp1109I GCAGC 2 cut(s) 170, 409
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 96, 183
MaeIII GTNAC 1 cut(s) 286
MalI GATC 4 cut(s) 143, 149, 169, 429
MboI GATC 4 cut(s) 141, 147, 167, 427
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 4 cut(s) 16, 98, 113, 352
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 75, 96
NdeII GATC 4 cut(s) 141, 147, 167, 427
NlaIII CATG 2 cut(s) 136, 210
NmuCI GTSAC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 129, 323
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 160, 424
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 159, 423
Sau3AI GATC 4 cut(s) 141, 147, 167, 427
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 101, 109, 397, 454
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 107
Sse9I AATT 1 cut(s) 342
SspMI CTAG 2 cut(s) 96, 183
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 2 cut(s) 57, 153
TaaI ACNGT 5 cut(s) 73, 241, 286, 337, 412
TaqI TCGA 2 cut(s) 273, 339
TasI AATT 1 cut(s) 342
TfiI GAWTC 2 cut(s) 129, 323
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 3 cut(s) 58, 117, 340
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 158, 422
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 3 cut(s) 58, 117, 340
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 84
XspI CTAG 2 cut(s) 96, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.