Rorug02G0396400

Acyl carrier protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013707
Physical Location & Seq
Reverse (-)
50698555 .. 50700094
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0396400.1

Sequence Viewer

Length: 834 bp
ATGGCGTCAGGCCACGAAGTCCAAGTGAAGCTCTCCTCCGCCAGAGACCTCAAGAACGTGAACTGGAGACACGGCCCCGTCAAGCCGTACGCCGTCGTGTGGGTTGAGCCGAGGAACAAGCTCTCCACCAAGGTGGACGAGGATGGCGACACGTCGCCCGAATGGGACGAGACGCTGACAATCCCTATCCCCGGTCCTGTCAACGACGACACCATGCTCTACATCGACATCGTCCATGCCGGAGCTGAGCCCGACACCAAACAGCTGGTGGGATCTGCTCGGCTCCGGCTCCGCGACGTTGTCGATGACGTCGGATATGAAGAACGGGCCAGCCGCACTCTTCACCTCAAAAGGCCTTCCGGTAGGCCACAGGGAAAGGTGGACGTCAAGGTTACAGTGAGGGAGCCGCGCTATCGTGTGCCGGAGCCGTATTATGCGCCGCCTTATGGGGTCCCACCGGCAGGCTCTGGAGGTTACCATGCTCCACCACCACCGCCGGCTTATGGAGACCCATATGCCGCACCACCACCGCCTCCGCCGGTGTATGGTGGAATGTACGCTGCACCGCCTTCCGGGTATCCCTACAATGCGACTCCGGTGACGTACAGTCAGCCAGCTCAGCCAAGTTATGATCAAGTGCAGTACGGGCAGGAGGAGAAGAAGAAGAGCAAGTTTGGTGGGATGGGAACGGGATTGGCTGTGGGGGCGGTAGCGGGGGCGCTGGGTGCATTTGCGTTGGCTGAGGGTGTTGATTATGTGGAGGACAAAATTGCAGACGACGTGTCGGAGAAGGTGGTGGATAATCTGAGCTACTATGATGGCGATGACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP-binding

Protein Analysis

277

Amino Acids

30.0

Weight (kDa)

5.01

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 104 1.4e-11 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 312, 387
AccII CGCG 2 cut(s) 294, 409
AclWI GGATC 1 cut(s) 280
AcyI GRCGYC 3 cut(s) 5, 309, 384
AfaI GTAC 4 cut(s) 89, 557, 605, 644
AfiI CCNNNNNNNGG 7 cut(s) 99, 191, 446, 461, 503, 545, 572
AflIII ACRYGT 2 cut(s) 150, 780
AhdI GACNNNNNGTC 2 cut(s) 606, 781
AjiI CACGTC 2 cut(s) 153, 781
AleI CACNNNNGTG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 6 cut(s) 31, 121, 245, 265, 617, 810
AluI AGCT 6 cut(s) 31, 121, 245, 265, 617, 810
Alw26I GTCTC 4 cut(s) 39, 61, 164, 501
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 5 cut(s) 10, 73, 327, 353, 365
ApeKI GCWGC 1 cut(s) 560
AspLEI GCGC 3 cut(s) 411, 439, 721
AspS9I GGNCC 4 cut(s) 74, 194, 327, 451
AsuC2I CCSGG 2 cut(s) 192, 574
AsuHPI GGTGA 2 cut(s) 335, 610
AvaII GGWCC 2 cut(s) 194, 451
BanII GRGCYC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 547
BccI CCATC 3 cut(s) 137, 676, 812
BceAI ACGGC 4 cut(s) 70, 77, 88, 412
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 2 cut(s) 192, 574
BcoDI GTCTC 4 cut(s) 39, 61, 164, 501
BfoI RGCGCY 1 cut(s) 722
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 5 cut(s) 334, 407, 440, 519, 561
BlpI GCTNAGC 2 cut(s) 246, 618
BlsI GCNGC 5 cut(s) 335, 408, 441, 520, 562
Bme1390I CCNGG 2 cut(s) 192, 574
Bme18I GGWCC 2 cut(s) 194, 451
BmeRI GACNNNNNGTC 2 cut(s) 606, 781
BmgBI CACGTC 2 cut(s) 153, 781
BmgT120I GGNCC 4 cut(s) 74, 194, 327, 451
BmiI GGNNCC 7 cut(s) 76, 284, 290, 405, 426, 452, 453
BmrFI CCNGG 2 cut(s) 192, 574
BpmI CTGGAG 2 cut(s) 85, 489
Bpu10I CCTNAGC 1 cut(s) 741
Bpu1102I GCTNAGC 2 cut(s) 246, 618
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 2 cut(s) 192, 574
BsaHI GRCGYC 3 cut(s) 5, 309, 384
BsaI GGTCTC 2 cut(s) 39, 501
BsaJI CCNNGG 3 cut(s) 110, 129, 190
BsaWI WCCGGW 2 cut(s) 359, 595
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 7 cut(s) 99, 191, 446, 461, 503, 545, 572
Bse118I RCCGGY 3 cut(s) 457, 496, 538
Bse1I ACTGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 110, 129, 190
BseGI GGATG 2 cut(s) 148, 687
BseLI CCNNNNNNNGG 7 cut(s) 99, 191, 446, 461, 503, 545, 572
BseMII CTCAG 4 cut(s) 237, 632, 732, 797
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 25, 668
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 546, 659
Bsh1236I CGCG 2 cut(s) 294, 409
BshFI GGCC 5 cut(s) 12, 75, 329, 355, 367
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 179, 437
BslI CCNNNNNNNGG 7 cut(s) 99, 191, 446, 461, 503, 545, 572
BsmAI GTCTC 4 cut(s) 39, 61, 164, 501
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 179, 437
BsnI GGCC 5 cut(s) 12, 75, 329, 355, 367
Bso31I GGTCTC 2 cut(s) 39, 501
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 272, 631
Bsp1720I GCTNAGC 2 cut(s) 246, 618
BspANI GGCC 5 cut(s) 12, 75, 329, 355, 367
BspCNI CTCAG 4 cut(s) 238, 631, 733, 798
BspFNI CGCG 2 cut(s) 294, 409
BspLI GGNNCC 7 cut(s) 76, 284, 290, 405, 426, 452, 453
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 659
BspTNI GGTCTC 2 cut(s) 39, 501
BsrFI RCCGGY 3 cut(s) 457, 496, 538
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 3 cut(s) 457, 496, 538
BssECI CCNNGG 3 cut(s) 110, 129, 190
BssMI GATC 2 cut(s) 272, 631
BssNI GRCGYC 3 cut(s) 5, 309, 384
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 397, 608
Bst6I CTCTTC 2 cut(s) 345, 659
BstACI GRCGYC 3 cut(s) 5, 309, 384
BstC8I GCNNGC 4 cut(s) 331, 463, 498, 615
BstDEI CTNAG 4 cut(s) 246, 618, 741, 806
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 2 cut(s) 148, 687
BstFNI CGCG 2 cut(s) 294, 409
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 3 cut(s) 411, 439, 721
BstKTI GATC 2 cut(s) 275, 634
BstMAI GTCTC 4 cut(s) 39, 61, 164, 501
BstMBI GATC 2 cut(s) 272, 631
BstMWI GCNNNNNNNGC 4 cut(s) 619, 646, 704, 725
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 190, 572
BstUI CGCG 2 cut(s) 294, 409
BstV1I GCAGC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 272
BstXI CCANNNNNNTGG 2 cut(s) 133, 265
BstYI RGATCY 1 cut(s) 272
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 5 cut(s) 12, 75, 329, 355, 367
BtrI CACGTC 2 cut(s) 153, 781
BtsCI GGATG 2 cut(s) 148, 687
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 4 cut(s) 331, 463, 498, 615
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 3 cut(s) 411, 439, 721
Cfr10I RCCGGY 3 cut(s) 457, 496, 538
Cfr13I GGNCC 4 cut(s) 74, 194, 327, 451
CseI GACGC 1 cut(s) 181
Csp6I GTAC 4 cut(s) 88, 556, 604, 643
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviAII CATG 3 cut(s) 214, 236, 479
CviQI GTAC 4 cut(s) 88, 556, 604, 643
DdeI CTNAG 4 cut(s) 246, 618, 741, 806
DpnI GATC 2 cut(s) 274, 633
DpnII GATC 2 cut(s) 272, 631
DriI GACNNNNNGTC 2 cut(s) 606, 781
Eam1104I CTCTTC 2 cut(s) 345, 659
Eam1105I GACNNNNNGTC 2 cut(s) 606, 781
EarI CTCTTC 2 cut(s) 345, 659
EciI GGCGGA 2 cut(s) 28, 525
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 2 cut(s) 39, 501
Eco47I GGWCC 2 cut(s) 194, 451
Eco91I GGTNACC 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 451
EcoO65I GGTNACC 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 3 cut(s) 217, 239, 482
FaqI GGGAC 2 cut(s) 179, 437
FatI CATG 3 cut(s) 213, 235, 478
FauI CCCGC 1 cut(s) 706
FauNDI CATATG 1 cut(s) 514
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 5 cut(s) 334, 407, 440, 519, 561
FokI GGATG 2 cut(s) 155, 694
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 5 cut(s) 334, 407, 440, 519, 561
GlaI GCGC 3 cut(s) 410, 438, 720
GluI GCNGC 5 cut(s) 334, 407, 440, 519, 561
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 2 cut(s) 85, 489
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 5 cut(s) 12, 75, 329, 355, 367
HgaI GACGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 411, 439, 721
Hin1I GRCGYC 3 cut(s) 5, 309, 384
Hin1II CATG 3 cut(s) 217, 239, 482
Hin6I GCGC 3 cut(s) 409, 437, 719
HinP1I GCGC 3 cut(s) 409, 437, 719
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 592
HphI GGTGA 2 cut(s) 335, 610
Hpy166II GTNNAC 4 cut(s) 61, 136, 202, 382
Hpy188I TCNGA 3 cut(s) 314, 787, 807
Hpy188III TCNNGA 2 cut(s) 52, 468
Hpy8I GTNNAC 4 cut(s) 61, 136, 202, 382
Hpy99I CGWCG 6 cut(s) 98, 157, 209, 299, 314, 782
HpyAV CCTTC 3 cut(s) 366, 579, 784
HpyCH4III ACNGT 2 cut(s) 397, 608
HpyCH4IV ACGT 7 cut(s) 57, 152, 297, 309, 384, 602, 780
HpyCH4V TGCA 4 cut(s) 563, 640, 728, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 619, 646, 704, 725
HpyF3I CTNAG 4 cut(s) 246, 618, 741, 806
HpySE526I ACGT 7 cut(s) 57, 152, 297, 309, 384, 602, 780
Hsp92I GRCGYC 3 cut(s) 5, 309, 384
Hsp92II CATG 3 cut(s) 217, 239, 482
HspAI GCGC 3 cut(s) 409, 437, 719
KflI GGGWCCC 1 cut(s) 451
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 2 cut(s) 272, 631
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 6 cut(s) 242, 288, 294, 403, 424, 487
Lsp1109I GCAGC 1 cut(s) 547
MaeII ACGT 7 cut(s) 57, 152, 297, 309, 384, 602, 780
MaeIII GTNAC 3 cut(s) 391, 473, 598
MalI GATC 2 cut(s) 274, 633
MboI GATC 2 cut(s) 272, 631
MboII GAAGA 5 cut(s) 332, 332, 670, 673, 676
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 768
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 2 cut(s) 292, 765
MroNI GCCGGC 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 192, 574
MvnI CGCG 2 cut(s) 294, 409
MwoI GCNNNNNNNGC 4 cut(s) 619, 646, 704, 725
NaeI GCCGGC 1 cut(s) 498
NciI CCSGG 2 cut(s) 192, 574
NdeI CATATG 1 cut(s) 514
NdeII GATC 2 cut(s) 272, 631
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 3 cut(s) 217, 239, 482
NlaIV GGNNCC 7 cut(s) 76, 284, 290, 405, 426, 452, 453
NmeAIII GCCGAG 2 cut(s) 135, 259
NmuCI GTSAC 1 cut(s) 598
OliI CACNNNNGTG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 498
Pfl23II CGTACG 1 cut(s) 87
PflFI GACNNNGTC 2 cut(s) 230, 299
PkrI GCNGC 5 cut(s) 335, 408, 441, 520, 562
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
PspEI GGTNACC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 721
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 7 cut(s) 76, 284, 290, 405, 426, 452, 453
PspPI GGNCC 4 cut(s) 74, 194, 327, 451
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 272
PsyI GACNNNGTC 2 cut(s) 230, 299
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 4 cut(s) 89, 557, 605, 644
RsaNI GTAC 4 cut(s) 88, 556, 604, 643
RseI CAYNNNNRTG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 659
SatI GCNGC 5 cut(s) 334, 407, 440, 519, 561
Sau3AI GATC 2 cut(s) 272, 631
Sau96I GGNCC 4 cut(s) 74, 194, 327, 451
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 192, 574
SduI GDGCHC 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 538
SinI GGWCC 2 cut(s) 194, 451
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 768
SseBI AGGCCT 1 cut(s) 355
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 190, 572
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 397, 608
TaiI ACGT 7 cut(s) 60, 155, 300, 312, 387, 605, 783
TaqI TCGA 2 cut(s) 225, 303
TasI AATT 1 cut(s) 768
TauI GCSGC 4 cut(s) 336, 409, 442, 521
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 402
Tth111I GACNNNGTC 2 cut(s) 230, 299
VpaK11BI GGWCC 2 cut(s) 194, 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
ZraI GACGTC 2 cut(s) 310, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.